Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99164 * 3 2 1 5 5 H 1.48493 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47011 * 119.99555 * 3 2 1 7 7 C 1.37873 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47096 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47229 * 55.00066 * 10 9 7 12 12 N 1.46897 * 109.47061 * 294.99493 * 10 9 7 13 13 C 1.50709 * 109.46892 * 174.99886 * 10 9 7 14 14 C 1.35311 * 126.12521 * 84.97249 * 13 10 9 15 15 C 1.39876 * 107.91749 * 180.02562 * 14 13 10 16 16 N 1.30834 * 108.20073 * 0.27043 * 15 14 13 17 17 N 1.34947 * 126.12449 * 265.02002 * 13 10 9 18 18 C 1.46500 * 126.04040 * 359.96194 * 17 13 10 19 19 C 1.52992 * 109.47291 * 90.00121 * 18 17 13 20 20 C 1.53006 * 117.50249 * 243.75237 * 19 18 17 21 21 C 1.53001 * 117.50225 * 175.08750 * 19 18 17 22 22 H 0.97003 * 120.00331 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.98907 * 9 7 2 24 24 H 1.09006 * 109.46547 * 299.99545 * 9 7 2 25 25 H 1.00903 * 110.99645 * 176.04521 * 12 10 9 26 26 H 1.00900 * 111.00411 * 300.00277 * 12 10 9 27 27 H 1.08001 * 126.04065 * 0.06320 * 14 13 10 28 28 H 1.08002 * 125.89548 * 179.97438 * 15 14 13 29 29 H 1.08996 * 109.47009 * 210.00717 * 18 17 13 30 30 H 1.09011 * 109.46832 * 330.00309 * 18 17 13 31 31 H 1.09004 * 115.55039 * 29.41731 * 19 18 17 32 32 H 1.08997 * 117.49636 * 359.97438 * 20 19 18 33 33 H 1.08992 * 117.50218 * 145.01880 * 20 19 18 34 34 H 1.08999 * 117.50076 * 214.98000 * 21 19 18 35 35 H 1.09000 * 117.49676 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0084 -3.6538 -1.2547 13 6 1.4960 -4.9637 0.1244 14 6 0.9443 -5.6664 -0.8918 15 6 0.3450 -6.8082 -0.3500 16 7 0.5253 -6.7885 0.9457 17 7 1.2542 -5.6367 1.2688 18 6 1.6747 -5.2314 2.6124 19 6 0.5868 -4.3630 3.2471 20 6 0.9420 -2.9106 3.5717 21 6 0.7861 -3.9317 4.7015 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 3.7161 -4.3730 -1.2523 26 1 2.3961 -3.7517 -2.0507 27 1 0.9638 -5.3941 -1.9368 28 1 -0.1803 -7.5715 -0.9048 29 1 1.8357 -6.1181 3.2255 30 1 2.6019 -4.6620 2.5465 31 1 -0.4316 -4.5706 2.9188 32 1 1.9510 -2.5739 3.3334 33 1 0.1573 -2.1629 3.4573 34 1 -0.1013 -3.8552 5.3299 35 1 1.6921 -4.2671 5.2062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = 93.307681 kcal Electronic energy + Delta-G solvation = -16850.963379 eV Core-core repulsion = 14272.129864 eV Total energy + Delta-G solvation = -2578.833514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89579 -37.24831 -35.47391 -32.47545 -32.35220 -29.05621 -28.28202 -26.62315 -24.30820 -22.09913 -21.43909 -21.22109 -20.16023 -18.77614 -17.02392 -15.94605 -15.29529 -15.05579 -14.77837 -14.40346 -14.18176 -13.70759 -13.40989 -12.94804 -12.49959 -12.17360 -12.04864 -11.48481 -11.21736 -11.15508 -10.81023 -10.64968 -10.44917 -10.32703 -10.16168 -9.77268 -9.74217 -9.13513 -8.76092 -8.32066 -8.19313 -7.97861 -5.93831 -3.93195 2.30196 2.85353 3.24238 3.37229 3.41857 3.45201 4.02646 4.51159 4.76362 4.92909 5.14477 5.20081 5.21893 5.32962 5.35391 5.45621 5.58358 5.67248 5.79869 5.83207 6.11102 6.16550 6.28212 6.42301 6.49309 6.49948 6.73439 7.04901 7.43024 7.50432 7.66884 7.87840 8.03563 8.09675 8.15948 8.47359 9.12129 9.68726 11.17511 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.008760 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.750388 B = 3195.646897 C = 4019.611300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.041 3.959 10 C 0.156 3.844 11 H 0.076 0.924 12 N -0.811 5.811 13 C 0.080 3.920 14 C -0.291 4.291 15 C 0.043 3.957 16 N -0.315 5.315 17 N -0.363 5.363 18 C 0.167 3.833 19 C -0.174 4.174 20 C -0.153 4.153 21 C -0.180 4.180 22 H 0.259 0.741 23 H 0.018 0.982 24 H 0.027 0.973 25 H 0.323 0.677 26 H 0.340 0.660 27 H 0.139 0.861 28 H 0.176 0.824 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -9.844 4.064 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.003 3.997 10 C 0.042 3.958 11 H 0.094 0.906 12 N -0.338 5.338 13 C -0.050 4.050 14 C -0.321 4.321 15 C -0.142 4.142 16 N -0.136 5.136 17 N -0.145 5.145 18 C 0.046 3.954 19 C -0.193 4.193 20 C -0.190 4.190 21 C -0.217 4.217 22 H 0.068 0.932 23 H 0.036 0.964 24 H 0.045 0.955 25 H 0.134 0.866 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.193 0.807 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.794 -9.550 5.509 11.374 hybrid contribution -0.045 0.332 -1.014 1.068 sum 2.749 -9.218 4.495 10.617 Atomic orbital electron populations 1.69962 1.05958 1.26460 1.51580 1.24976 0.94746 0.99008 0.95847 0.86688 0.79504 0.83379 0.78549 1.20313 1.21631 1.20460 1.21045 0.93205 0.89886 1.49186 0.92082 1.19121 0.92667 0.90034 0.97834 1.20560 0.94511 0.88081 0.92668 0.90644 1.58941 1.17446 1.53703 1.03688 1.23059 0.98962 0.96736 0.86262 1.21092 1.12000 0.99130 0.99835 1.23676 1.00102 0.98692 0.91759 1.77214 1.15957 1.04742 1.15638 1.48503 1.42736 1.17128 1.06134 1.21174 0.96385 0.98615 0.79264 1.22566 1.00156 0.98339 0.98245 1.23090 1.04118 0.91584 1.00201 1.22985 1.03035 1.05035 0.90667 0.93185 0.96413 0.95525 0.86576 0.84676 0.84288 0.80726 0.89147 0.88896 0.87575 0.87941 0.88061 0.88882 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.49 -13.29 8.84 -34.44 -0.30 -13.59 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.04 1.01 4.60 -27.88 -0.13 0.88 16 10 C 0.16 3.05 2.96 -68.86 -0.20 2.85 16 11 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 12 N -0.81 -14.51 8.80 -5.65 -0.05 -14.56 16 13 C 0.08 1.47 5.97 -82.26 -0.49 0.98 16 14 C -0.29 -5.01 10.13 -40.01 -0.41 -5.41 16 15 C 0.04 0.70 12.03 -17.36 -0.21 0.49 16 16 N -0.31 -5.64 12.58 30.63 0.39 -5.25 16 17 N -0.36 -6.39 3.61 -57.14 -0.21 -6.60 16 18 C 0.17 2.49 6.52 -4.05 -0.03 2.46 16 19 C -0.17 -2.67 6.01 -90.62 -0.54 -3.21 16 20 C -0.15 -2.43 9.41 -26.69 -0.25 -2.69 16 21 C -0.18 -2.28 10.26 -26.69 -0.27 -2.55 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.03 0.69 7.35 -51.93 -0.38 0.31 16 25 H 0.32 4.90 9.06 -39.29 -0.36 4.54 16 26 H 0.34 5.88 8.05 -39.29 -0.32 5.57 16 27 H 0.14 2.17 7.48 -52.49 -0.39 1.78 16 28 H 0.18 2.17 8.06 -52.49 -0.42 1.74 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.30 6.71 -51.92 -0.35 0.95 16 31 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 32 H 0.10 1.67 8.03 -51.93 -0.42 1.25 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -30.57 297.90 -7.67 -38.24 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.07 Total: 11.22 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.93 Total: -18.37 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.87 Total: -52.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.57 -7.67 -38.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.548 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds