Wall clock time and date at job start Mon Mar 30 2020 03:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99164 * 3 2 1 5 5 H 1.48493 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47011 * 119.99555 * 3 2 1 7 7 C 1.37873 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47096 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47229 * 55.00066 * 10 9 7 12 12 N 1.46897 * 109.47061 * 294.99493 * 10 9 7 13 13 C 1.50709 * 109.46892 * 174.99886 * 10 9 7 14 14 C 1.35311 * 126.12521 * 84.97249 * 13 10 9 15 15 C 1.39876 * 107.91749 * 180.02562 * 14 13 10 16 16 N 1.30834 * 108.20073 * 0.27043 * 15 14 13 17 17 N 1.34947 * 126.12449 * 265.02002 * 13 10 9 18 18 C 1.46500 * 126.04040 * 359.96194 * 17 13 10 19 19 C 1.52992 * 109.47291 * 90.00121 * 18 17 13 20 20 C 1.53006 * 117.50249 * 243.75237 * 19 18 17 21 21 C 1.53001 * 117.50225 * 175.08750 * 19 18 17 22 22 H 0.97003 * 120.00331 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.98907 * 9 7 2 24 24 H 1.09006 * 109.46547 * 299.99545 * 9 7 2 25 25 H 1.00903 * 110.99645 * 176.04521 * 12 10 9 26 26 H 1.00900 * 111.00411 * 300.00277 * 12 10 9 27 27 H 1.08001 * 126.04065 * 0.06320 * 14 13 10 28 28 H 1.08002 * 125.89548 * 179.97438 * 15 14 13 29 29 H 1.08996 * 109.47009 * 210.00717 * 18 17 13 30 30 H 1.09011 * 109.46832 * 330.00309 * 18 17 13 31 31 H 1.09004 * 115.55039 * 29.41731 * 19 18 17 32 32 H 1.08997 * 117.49636 * 359.97438 * 20 19 18 33 33 H 1.08992 * 117.50218 * 145.01880 * 20 19 18 34 34 H 1.08999 * 117.50076 * 214.98000 * 21 19 18 35 35 H 1.09000 * 117.49676 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0084 -3.6538 -1.2547 13 6 1.4960 -4.9637 0.1244 14 6 0.9443 -5.6664 -0.8918 15 6 0.3450 -6.8082 -0.3500 16 7 0.5253 -6.7885 0.9457 17 7 1.2542 -5.6367 1.2688 18 6 1.6747 -5.2314 2.6124 19 6 0.5868 -4.3630 3.2471 20 6 0.9420 -2.9106 3.5717 21 6 0.7861 -3.9317 4.7015 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 3.7161 -4.3730 -1.2523 26 1 2.3961 -3.7517 -2.0507 27 1 0.9638 -5.3941 -1.9368 28 1 -0.1803 -7.5715 -0.9048 29 1 1.8357 -6.1181 3.2255 30 1 2.6019 -4.6620 2.5465 31 1 -0.4316 -4.5706 2.9188 32 1 1.9510 -2.5739 3.3334 33 1 0.1573 -2.1629 3.4573 34 1 -0.1013 -3.8552 5.3299 35 1 1.6921 -4.2671 5.2062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:26 Heat of formation + Delta-G solvation = 73.301877 kcal Electronic energy + Delta-G solvation = -16851.830896 eV Core-core repulsion = 14272.129864 eV Total energy + Delta-G solvation = -2579.701031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.23628 -38.44831 -37.12108 -34.49066 -33.64939 -30.44534 -30.19449 -27.86792 -26.17826 -23.28178 -23.18904 -22.46710 -21.46172 -20.20179 -18.70955 -17.71675 -16.87782 -16.38272 -16.32472 -16.01311 -15.48887 -15.20270 -14.69011 -14.34908 -14.09343 -13.85562 -13.53213 -13.11388 -12.73151 -12.63766 -12.52062 -12.39088 -12.18469 -11.75331 -11.62808 -11.39710 -11.21171 -10.96473 -10.47114 -10.14909 -9.65436 -9.37400 -8.08412 -6.14171 0.92340 1.44731 1.46940 1.54072 1.60119 1.92422 2.48892 2.84728 3.25612 3.54588 3.74785 3.76538 3.87474 3.99516 4.05861 4.12895 4.30952 4.45804 4.52245 4.74972 4.78084 4.83793 4.87787 5.05342 5.16792 5.21736 5.23990 5.52449 5.66847 5.78844 5.88703 6.09192 6.27575 6.43495 6.73425 6.82085 6.99001 7.52088 9.02958 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.008760 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.750388 B = 3195.646897 C = 4019.611300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.054 3.946 10 C 0.173 3.827 11 H 0.077 0.923 12 N -0.816 5.816 13 C 0.061 3.939 14 C -0.296 4.296 15 C 0.045 3.955 16 N -0.332 5.332 17 N -0.368 5.368 18 C 0.163 3.837 19 C -0.182 4.182 20 C -0.176 4.176 21 C -0.139 4.139 22 H 0.258 0.742 23 H -0.016 1.016 24 H 0.003 0.997 25 H 0.342 0.658 26 H 0.343 0.657 27 H 0.151 0.849 28 H 0.212 0.788 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -10.742 4.574 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.196 4.196 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.016 3.984 10 C 0.059 3.941 11 H 0.095 0.905 12 N -0.345 5.345 13 C -0.070 4.070 14 C -0.325 4.325 15 C -0.140 4.140 16 N -0.153 5.153 17 N -0.150 5.150 18 C 0.042 3.958 19 C -0.201 4.201 20 C -0.213 4.213 21 C -0.176 4.176 22 H 0.066 0.934 23 H 0.003 0.997 24 H 0.021 0.979 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.169 0.831 28 H 0.229 0.771 29 H 0.132 0.868 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.132 -10.463 6.027 12.762 hybrid contribution -0.495 0.573 -1.194 1.414 sum 3.637 -9.890 4.832 11.593 Atomic orbital electron populations 1.70103 1.07577 1.27147 1.52960 1.25789 0.95475 1.02617 0.95680 0.85670 0.78257 0.79105 0.78978 1.19732 1.21686 1.19255 1.21354 0.93335 0.90952 1.48124 0.91947 1.18852 0.92869 0.91651 0.95009 1.20047 0.93439 0.87045 0.93569 0.90514 1.58841 1.17753 1.54848 1.03016 1.22887 1.00056 0.96708 0.87344 1.21391 1.11455 0.99304 1.00344 1.24272 0.99395 0.98985 0.91318 1.77182 1.16318 1.05130 1.16640 1.48724 1.42573 1.17004 1.06685 1.21398 0.96252 0.99534 0.78573 1.22472 0.99018 0.97757 1.00878 1.22933 1.02723 0.91653 1.04014 1.23115 1.04747 1.00617 0.89148 0.93368 0.99725 0.97909 0.84449 0.84321 0.83092 0.77126 0.86833 0.88073 0.90247 0.88565 0.91046 0.87619 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 13.29 21.45 0.28 -56.01 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.50 -27.13 8.84 25.60 0.23 -26.90 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.05 2.73 4.60 29.85 0.14 2.86 16 10 C 0.17 6.77 2.96 44.17 0.13 6.90 16 11 H 0.08 2.96 6.95 -2.39 -0.02 2.95 16 12 N -0.82 -28.46 8.80 -171.79 -1.51 -29.97 16 13 C 0.06 2.20 5.97 41.41 0.25 2.45 16 14 C -0.30 -9.83 10.13 21.99 0.22 -9.60 16 15 C 0.05 1.39 12.03 85.24 1.03 2.41 16 16 N -0.33 -11.41 12.58 -57.02 -0.72 -12.12 16 17 N -0.37 -12.65 3.61 -334.70 -1.21 -13.86 16 18 C 0.16 4.66 6.52 86.38 0.56 5.23 16 19 C -0.18 -5.56 6.01 -10.79 -0.06 -5.63 16 20 C -0.18 -5.73 9.41 30.62 0.29 -5.44 16 21 C -0.14 -3.27 10.26 30.62 0.31 -2.95 16 22 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 23 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 24 H 0.00 0.15 7.35 -2.38 -0.02 0.13 16 25 H 0.34 9.80 9.06 -89.69 -0.81 8.99 16 26 H 0.34 11.65 8.05 -89.69 -0.72 10.93 16 27 H 0.15 4.53 7.48 -2.91 -0.02 4.50 16 28 H 0.21 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.10 2.69 6.71 -2.38 -0.02 2.68 16 31 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.10 3.20 8.03 -2.39 -0.02 3.18 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -66.33 297.90 1.99 -64.34 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.44 Total: 31.56 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 3.55 Total: -30.15 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -3.15 Total: -111.96 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -66.33 1.99 -64.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.646 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds