Wall clock time and date at job start Mon Mar 30 2020 03:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34949 * 126.12060 * 2 1 4 4 H 0.96999 * 126.04241 * 0.02562 * 3 2 1 5 5 N 1.40095 * 107.92067 * 180.02562 * 3 2 1 6 6 C 1.30842 * 108.20218 * 359.97438 * 5 3 2 7 7 C 1.35317 * 126.12962 * 179.97438 * 2 1 3 8 8 C 1.50701 * 126.03811 * 0.04706 * 7 2 1 9 9 C 1.52999 * 109.90638 * 300.06583 * 8 7 2 10 10 N 1.47904 * 109.91731 * 178.96399 * 8 7 2 11 11 C 1.48529 * 105.81848 * 215.31832 * 10 8 7 12 12 C 1.54928 * 103.23223 * 39.20750 * 11 10 8 13 13 C 1.53992 * 109.91723 * 61.37290 * 8 7 2 14 14 H 1.08994 * 110.31304 * 239.49233 * 13 8 7 15 15 C 1.50704 * 110.31016 * 1.66213 * 13 8 7 16 16 H 1.07998 * 119.99709 * 34.40728 * 15 13 8 17 17 C 1.37877 * 119.99963 * 214.40625 * 15 13 8 18 18 N 1.31513 * 120.00046 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99906 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47012 * 90.00079 * 19 17 15 21 21 H 1.48500 * 109.46979 * 210.00120 * 19 17 15 22 22 H 1.48501 * 109.46727 * 329.99927 * 19 17 15 23 23 H 1.08994 * 109.47040 * 85.59541 * 1 2 3 24 24 H 1.09000 * 109.46700 * 205.59251 * 1 2 3 25 25 H 1.08996 * 109.47184 * 325.59288 * 1 2 3 26 26 H 1.08001 * 125.89165 * 179.73786 * 6 5 3 27 27 H 1.09007 * 109.46926 * 69.04890 * 9 8 7 28 28 H 1.09006 * 109.46922 * 189.04411 * 9 8 7 29 29 H 1.08991 * 109.47276 * 309.04652 * 9 8 7 30 30 H 1.00900 * 110.99959 * 94.79977 * 10 8 7 31 31 H 1.09007 * 110.66518 * 157.64217 * 11 10 8 32 32 H 1.09005 * 110.66734 * 280.76760 * 11 10 8 33 33 H 1.09001 * 110.72761 * 80.93625 * 12 11 10 34 34 H 1.08998 * 110.72846 * 204.05271 * 12 11 10 35 35 H 0.96999 * 119.99799 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3026 1.0901 0.0000 4 1 2.0055 2.0135 0.0004 5 7 3.6334 0.6525 -0.0006 6 6 3.6335 -0.6559 -0.0004 7 6 2.3049 -1.0929 0.0005 8 6 1.8434 -2.5275 0.0001 9 6 0.9970 -2.8028 1.2446 10 7 3.0127 -3.4330 -0.0243 11 6 2.6053 -4.5982 -0.8503 12 6 1.7815 -3.9525 -1.9925 13 6 1.0233 -2.8145 -1.2713 14 1 0.0168 -3.1386 -1.0071 15 6 0.9665 -1.5879 -2.1450 16 1 1.8132 -0.9191 -2.1926 17 6 -0.1664 -1.3195 -2.8837 18 7 -1.1972 -2.1342 -2.8262 19 14 -0.2370 0.2012 -3.9662 20 1 0.2670 -0.1328 -5.3224 21 1 -1.6410 0.6753 -4.0627 22 1 0.6068 1.2700 -3.3738 23 1 -0.3633 0.0789 -1.0246 24 1 -0.3633 -0.9269 0.4439 25 1 -0.3633 0.8478 0.5807 26 1 4.5084 -1.2890 -0.0047 27 1 0.0516 -2.2656 1.1671 28 1 0.8018 -3.8724 1.3219 29 1 1.5343 -2.4665 2.1312 30 1 3.2658 -3.7219 0.9088 31 1 3.4802 -5.1114 -1.2496 32 1 1.9873 -5.2837 -0.2703 33 1 2.4395 -3.5498 -2.7627 34 1 1.0847 -4.6731 -2.4206 35 1 -1.9943 -1.9452 -3.3455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260098017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:27 Heat of formation + Delta-G solvation = 60.873991 kcal Electronic energy + Delta-G solvation = -17902.632644 eV Core-core repulsion = 15322.392699 eV Total energy + Delta-G solvation = -2580.239945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.13590 -39.38795 -34.88448 -33.42112 -32.69281 -31.00177 -29.87052 -27.89877 -27.23570 -24.95174 -22.49363 -21.88242 -21.32683 -19.42466 -18.40179 -17.66416 -16.72739 -16.34325 -15.67027 -15.41896 -14.83146 -14.74974 -14.00854 -13.87168 -13.80500 -13.52202 -13.38254 -13.04381 -12.76438 -12.64005 -12.54987 -12.36101 -12.13770 -11.72984 -11.58393 -11.35534 -10.88053 -10.66696 -10.36990 -10.08993 -9.18187 -8.70329 -8.01838 -5.96079 1.24446 1.35394 1.40398 1.45458 2.24244 2.30604 2.45972 3.29564 3.56192 4.23872 4.26467 4.36823 4.44807 4.54022 4.57947 4.60332 4.73970 4.88299 4.90320 5.04331 5.13964 5.19965 5.30987 5.43789 5.52709 5.57050 5.66682 5.73733 5.80870 5.93085 6.13224 6.35625 6.61127 6.72780 6.85452 7.08192 7.10517 7.61407 9.08313 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.014857 C = 0.010604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.602585 B = 1884.129506 C = 2639.877173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.113 3.887 3 N -0.487 5.487 4 H 0.438 0.562 5 N -0.344 5.344 6 C 0.060 3.940 7 C -0.188 4.188 8 C 0.174 3.826 9 C -0.158 4.158 10 N -0.663 5.663 11 C 0.049 3.951 12 C -0.116 4.116 13 C 0.040 3.960 14 H 0.035 0.965 15 C -0.464 4.464 16 H 0.042 0.958 17 C 0.031 3.969 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.291 1.291 21 H -0.282 1.282 22 H -0.274 1.274 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.188 0.812 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.337 0.663 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -0.041 7.805 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 N -0.197 5.197 4 H 0.282 0.718 5 N -0.167 5.167 6 C -0.124 4.124 7 C -0.200 4.200 8 C 0.081 3.919 9 C -0.217 4.217 10 N -0.292 5.292 11 C -0.080 4.080 12 C -0.154 4.154 13 C 0.021 3.979 14 H 0.054 0.946 15 C -0.503 4.503 16 H 0.060 0.940 17 C -0.166 4.166 18 N -0.563 5.563 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.207 1.207 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.205 0.795 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.220 1.325 7.226 8.472 hybrid contribution -1.542 0.085 -0.632 1.669 sum 2.678 1.410 6.594 7.255 Atomic orbital electron populations 1.20660 0.87302 1.03033 1.03298 1.20746 0.94597 0.87223 0.99022 1.46101 1.03937 1.08224 1.61452 0.71754 1.77093 0.97454 1.13765 1.28397 1.23792 0.98613 0.91266 0.98775 1.19385 0.91709 0.94763 1.14110 1.19937 0.88710 0.87972 0.95236 1.22440 1.00628 1.00986 0.97600 1.62873 1.35170 1.13939 1.17179 1.22920 0.98271 0.92182 0.94628 1.22561 0.97600 0.97854 0.97414 1.19670 0.93906 0.93254 0.91085 0.94632 1.21160 0.98558 1.07394 1.23155 0.94003 1.25247 0.96088 0.97669 0.97639 1.69989 1.05310 1.38133 1.42912 0.86334 0.77030 0.82571 0.80233 1.21775 1.20732 1.19943 0.91026 0.89947 0.90935 0.79540 0.92280 0.92669 0.92125 0.84623 0.89918 0.93975 0.94271 0.94310 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.11 8.91 71.24 0.63 -2.48 16 2 C 0.11 4.34 5.55 41.41 0.23 4.57 16 3 N -0.49 -17.55 7.36 -48.00 -0.35 -17.90 16 4 H 0.44 12.90 8.96 -213.32 -1.91 10.99 16 5 N -0.34 -13.36 12.70 -57.03 -0.72 -14.08 16 6 C 0.06 2.32 11.34 85.23 0.97 3.29 16 7 C -0.19 -7.41 3.29 -20.15 -0.07 -7.48 16 8 C 0.17 6.55 0.85 2.92 0.00 6.55 16 9 C -0.16 -5.17 7.97 71.98 0.57 -4.60 16 10 N -0.66 -22.00 6.30 -462.79 -2.92 -24.92 16 11 C 0.05 1.62 7.54 86.65 0.65 2.28 16 12 C -0.12 -4.94 6.60 31.80 0.21 -4.73 16 13 C 0.04 1.83 2.52 -10.66 -0.03 1.81 16 14 H 0.04 1.80 6.87 -2.39 -0.02 1.79 16 15 C -0.46 -23.38 4.64 25.60 0.12 -23.26 16 16 H 0.04 2.27 6.01 -2.91 -0.02 2.25 16 17 C 0.03 1.60 4.12 84.65 0.35 1.95 16 18 N -0.92 -50.25 12.80 21.45 0.27 -49.97 16 19 Si 0.91 42.52 28.57 68.60 1.96 44.48 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 H 0.07 3.05 4.69 -2.39 -0.01 3.03 16 24 H 0.08 3.08 4.90 -2.39 -0.01 3.07 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.19 6.46 7.86 -2.91 -0.02 6.44 16 27 H 0.06 2.04 5.29 -2.38 -0.01 2.02 16 28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16 30 H 0.34 9.36 8.43 -89.69 -0.76 8.60 16 31 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.26 13.60 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -58.54 270.40 0.34 -58.20 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -1.55 Total: 26.29 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.65 Total: -22.10 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.72 Total: -106.87 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.96 Total: 44.48 kcal Total: -58.54 0.34 -58.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260098017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.075 kcal (2) G-P(sol) polarization free energy of solvation -58.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds