Wall clock time and date at job start Mon Mar 30 2020 03:40:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.34949 * 126.12060 * 2 1
4 4 H 0.96999 * 126.04241 * 0.02562 * 3 2 1
5 5 N 1.40095 * 107.92067 * 180.02562 * 3 2 1
6 6 C 1.30842 * 108.20218 * 359.97438 * 5 3 2
7 7 C 1.35317 * 126.12962 * 179.97438 * 2 1 3
8 8 C 1.50701 * 126.03811 * 0.04706 * 7 2 1
9 9 C 1.52999 * 109.90638 * 300.06583 * 8 7 2
10 10 N 1.47904 * 109.91731 * 178.96399 * 8 7 2
11 11 C 1.48529 * 105.81848 * 215.31832 * 10 8 7
12 12 C 1.54928 * 103.23223 * 39.20750 * 11 10 8
13 13 C 1.53992 * 109.91723 * 61.37290 * 8 7 2
14 14 H 1.08994 * 110.31304 * 239.49233 * 13 8 7
15 15 C 1.50704 * 110.31016 * 1.66213 * 13 8 7
16 16 H 1.07998 * 119.99709 * 34.40728 * 15 13 8
17 17 C 1.37877 * 119.99963 * 214.40625 * 15 13 8
18 18 N 1.31513 * 120.00046 * 359.97438 * 17 15 13
19 19 Si 1.86803 * 119.99906 * 179.97438 * 17 15 13
20 20 H 1.48493 * 109.47012 * 90.00079 * 19 17 15
21 21 H 1.48500 * 109.46979 * 210.00120 * 19 17 15
22 22 H 1.48501 * 109.46727 * 329.99927 * 19 17 15
23 23 H 1.08994 * 109.47040 * 85.59541 * 1 2 3
24 24 H 1.09000 * 109.46700 * 205.59251 * 1 2 3
25 25 H 1.08996 * 109.47184 * 325.59288 * 1 2 3
26 26 H 1.08001 * 125.89165 * 179.73786 * 6 5 3
27 27 H 1.09007 * 109.46926 * 69.04890 * 9 8 7
28 28 H 1.09006 * 109.46922 * 189.04411 * 9 8 7
29 29 H 1.08991 * 109.47276 * 309.04652 * 9 8 7
30 30 H 1.00900 * 110.99959 * 94.79977 * 10 8 7
31 31 H 1.09007 * 110.66518 * 157.64217 * 11 10 8
32 32 H 1.09005 * 110.66734 * 280.76760 * 11 10 8
33 33 H 1.09001 * 110.72761 * 80.93625 * 12 11 10
34 34 H 1.08998 * 110.72846 * 204.05271 * 12 11 10
35 35 H 0.96999 * 119.99799 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.3026 1.0901 0.0000
4 1 2.0055 2.0135 0.0004
5 7 3.6334 0.6525 -0.0006
6 6 3.6335 -0.6559 -0.0004
7 6 2.3049 -1.0929 0.0005
8 6 1.8434 -2.5275 0.0001
9 6 0.9970 -2.8028 1.2446
10 7 3.0127 -3.4330 -0.0243
11 6 2.6053 -4.5982 -0.8503
12 6 1.7815 -3.9525 -1.9925
13 6 1.0233 -2.8145 -1.2713
14 1 0.0168 -3.1386 -1.0071
15 6 0.9665 -1.5879 -2.1450
16 1 1.8132 -0.9191 -2.1926
17 6 -0.1664 -1.3195 -2.8837
18 7 -1.1972 -2.1342 -2.8262
19 14 -0.2370 0.2012 -3.9662
20 1 0.2670 -0.1328 -5.3224
21 1 -1.6410 0.6753 -4.0627
22 1 0.6068 1.2700 -3.3738
23 1 -0.3633 0.0789 -1.0246
24 1 -0.3633 -0.9269 0.4439
25 1 -0.3633 0.8478 0.5807
26 1 4.5084 -1.2890 -0.0047
27 1 0.0516 -2.2656 1.1671
28 1 0.8018 -3.8724 1.3219
29 1 1.5343 -2.4665 2.1312
30 1 3.2658 -3.7219 0.9088
31 1 3.4802 -5.1114 -1.2496
32 1 1.9873 -5.2837 -0.2703
33 1 2.4395 -3.5498 -2.7627
34 1 1.0847 -4.6731 -2.4206
35 1 -1.9943 -1.9452 -3.3455
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260098017.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:27
Heat of formation + Delta-G solvation = 60.873991 kcal
Electronic energy + Delta-G solvation = -17902.632644 eV
Core-core repulsion = 15322.392699 eV
Total energy + Delta-G solvation = -2580.239945 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.13590 -39.38795 -34.88448 -33.42112 -32.69281 -31.00177 -29.87052 -27.89877
-27.23570 -24.95174 -22.49363 -21.88242 -21.32683 -19.42466 -18.40179 -17.66416
-16.72739 -16.34325 -15.67027 -15.41896 -14.83146 -14.74974 -14.00854 -13.87168
-13.80500 -13.52202 -13.38254 -13.04381 -12.76438 -12.64005 -12.54987 -12.36101
-12.13770 -11.72984 -11.58393 -11.35534 -10.88053 -10.66696 -10.36990 -10.08993
-9.18187 -8.70329 -8.01838 -5.96079 1.24446 1.35394 1.40398 1.45458
2.24244 2.30604 2.45972 3.29564 3.56192 4.23872 4.26467 4.36823
4.44807 4.54022 4.57947 4.60332 4.73970 4.88299 4.90320 5.04331
5.13964 5.19965 5.30987 5.43789 5.52709 5.57050 5.66682 5.73733
5.80870 5.93085 6.13224 6.35625 6.61127 6.72780 6.85452 7.08192
7.10517 7.61407 9.08313
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.019817 B = 0.014857 C = 0.010604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1412.602585 B = 1884.129506 C = 2639.877173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C 0.113 3.887
3 N -0.487 5.487
4 H 0.438 0.562
5 N -0.344 5.344
6 C 0.060 3.940
7 C -0.188 4.188
8 C 0.174 3.826
9 C -0.158 4.158
10 N -0.663 5.663
11 C 0.049 3.951
12 C -0.116 4.116
13 C 0.040 3.960
14 H 0.035 0.965
15 C -0.464 4.464
16 H 0.042 0.958
17 C 0.031 3.969
18 N -0.922 5.922
19 Si 0.910 3.090
20 H -0.291 1.291
21 H -0.282 1.282
22 H -0.274 1.274
23 H 0.071 0.929
24 H 0.082 0.918
25 H 0.072 0.928
26 H 0.188 0.812
27 H 0.058 0.942
28 H 0.054 0.946
29 H 0.060 0.940
30 H 0.337 0.663
31 H 0.083 0.917
32 H 0.042 0.958
33 H 0.038 0.962
34 H 0.038 0.962
35 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.258 -0.041 7.805 8.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.016 4.016
3 N -0.197 5.197
4 H 0.282 0.718
5 N -0.167 5.167
6 C -0.124 4.124
7 C -0.200 4.200
8 C 0.081 3.919
9 C -0.217 4.217
10 N -0.292 5.292
11 C -0.080 4.080
12 C -0.154 4.154
13 C 0.021 3.979
14 H 0.054 0.946
15 C -0.503 4.503
16 H 0.060 0.940
17 C -0.166 4.166
18 N -0.563 5.563
19 Si 0.738 3.262
20 H -0.218 1.218
21 H -0.207 1.207
22 H -0.199 1.199
23 H 0.090 0.910
24 H 0.101 0.899
25 H 0.091 0.909
26 H 0.205 0.795
27 H 0.077 0.923
28 H 0.073 0.927
29 H 0.079 0.921
30 H 0.154 0.846
31 H 0.101 0.899
32 H 0.060 0.940
33 H 0.057 0.943
34 H 0.057 0.943
35 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 4.220 1.325 7.226 8.472
hybrid contribution -1.542 0.085 -0.632 1.669
sum 2.678 1.410 6.594 7.255
Atomic orbital electron populations
1.20660 0.87302 1.03033 1.03298 1.20746 0.94597 0.87223 0.99022
1.46101 1.03937 1.08224 1.61452 0.71754 1.77093 0.97454 1.13765
1.28397 1.23792 0.98613 0.91266 0.98775 1.19385 0.91709 0.94763
1.14110 1.19937 0.88710 0.87972 0.95236 1.22440 1.00628 1.00986
0.97600 1.62873 1.35170 1.13939 1.17179 1.22920 0.98271 0.92182
0.94628 1.22561 0.97600 0.97854 0.97414 1.19670 0.93906 0.93254
0.91085 0.94632 1.21160 0.98558 1.07394 1.23155 0.94003 1.25247
0.96088 0.97669 0.97639 1.69989 1.05310 1.38133 1.42912 0.86334
0.77030 0.82571 0.80233 1.21775 1.20732 1.19943 0.91026 0.89947
0.90935 0.79540 0.92280 0.92669 0.92125 0.84623 0.89918 0.93975
0.94271 0.94310 0.93392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -3.11 8.91 71.24 0.63 -2.48 16
2 C 0.11 4.34 5.55 41.41 0.23 4.57 16
3 N -0.49 -17.55 7.36 -48.00 -0.35 -17.90 16
4 H 0.44 12.90 8.96 -213.32 -1.91 10.99 16
5 N -0.34 -13.36 12.70 -57.03 -0.72 -14.08 16
6 C 0.06 2.32 11.34 85.23 0.97 3.29 16
7 C -0.19 -7.41 3.29 -20.15 -0.07 -7.48 16
8 C 0.17 6.55 0.85 2.92 0.00 6.55 16
9 C -0.16 -5.17 7.97 71.98 0.57 -4.60 16
10 N -0.66 -22.00 6.30 -462.79 -2.92 -24.92 16
11 C 0.05 1.62 7.54 86.65 0.65 2.28 16
12 C -0.12 -4.94 6.60 31.80 0.21 -4.73 16
13 C 0.04 1.83 2.52 -10.66 -0.03 1.81 16
14 H 0.04 1.80 6.87 -2.39 -0.02 1.79 16
15 C -0.46 -23.38 4.64 25.60 0.12 -23.26 16
16 H 0.04 2.27 6.01 -2.91 -0.02 2.25 16
17 C 0.03 1.60 4.12 84.65 0.35 1.95 16
18 N -0.92 -50.25 12.80 21.45 0.27 -49.97 16
19 Si 0.91 42.52 28.57 68.60 1.96 44.48 16
20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16
23 H 0.07 3.05 4.69 -2.39 -0.01 3.03 16
24 H 0.08 3.08 4.90 -2.39 -0.01 3.07 16
25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
26 H 0.19 6.46 7.86 -2.91 -0.02 6.44 16
27 H 0.06 2.04 5.29 -2.38 -0.01 2.02 16
28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16
29 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16
30 H 0.34 9.36 8.43 -89.69 -0.76 8.60 16
31 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16
32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16
33 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16
34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
35 H 0.26 13.60 8.31 -92.71 -0.77 12.82 16
Total: -1.00 -58.54 270.40 0.34 -58.20
By element:
Atomic # 1 Polarization: 27.83 SS G_CDS: -1.55 Total: 26.29 kcal
Atomic # 6 Polarization: -25.75 SS G_CDS: 3.65 Total: -22.10 kcal
Atomic # 7 Polarization: -103.15 SS G_CDS: -3.72 Total: -106.87 kcal
Atomic # 14 Polarization: 42.52 SS G_CDS: 1.96 Total: 44.48 kcal
Total: -58.54 0.34 -58.20 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260098017.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.075 kcal
(2) G-P(sol) polarization free energy of solvation -58.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds