Wall clock time and date at job start Mon Mar 30 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39866 * 125.90048 * 2 1 4 4 C 1.35315 * 107.92258 * 180.14016 * 3 2 1 5 5 C 1.50697 * 126.12669 * 179.90103 * 4 3 2 6 6 H 1.09005 * 109.91016 * 154.16500 * 5 4 3 7 7 N 1.47906 * 109.91840 * 33.06349 * 5 4 3 8 8 C 1.48536 * 105.81755 * 215.31731 * 7 5 4 9 9 C 1.54930 * 103.23133 * 39.20363 * 8 7 5 10 10 C 1.54001 * 109.91935 * 275.47107 * 5 4 3 11 11 H 1.08994 * 110.30695 * 1.66134 * 10 5 4 12 12 C 1.50701 * 110.30694 * 239.59419 * 10 5 4 13 13 H 1.07999 * 120.00111 * 0.02562 * 12 10 5 14 14 C 1.37878 * 119.99543 * 179.97438 * 12 10 5 15 15 N 1.31513 * 120.00248 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99872 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47067 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47081 * 119.99931 * 16 14 12 19 19 H 1.48499 * 109.47569 * 240.00048 * 16 14 12 20 20 N 1.34946 * 107.74668 * 359.64360 * 4 3 2 21 21 C 1.46494 * 126.04082 * 180.20577 * 20 4 3 22 22 N 1.30838 * 125.90023 * 179.73790 * 2 1 3 23 23 H 1.08996 * 109.47155 * 270.23490 * 1 2 3 24 24 H 1.09001 * 109.47156 * 30.23505 * 1 2 3 25 25 H 1.09004 * 109.46912 * 150.24198 * 1 2 3 26 26 H 1.08002 * 126.03570 * 0.02562 * 3 2 1 27 27 H 1.00898 * 110.99912 * 335.82562 * 7 5 4 28 28 H 1.08998 * 110.66597 * 157.64274 * 8 7 5 29 29 H 1.09005 * 110.66372 * 280.76726 * 8 7 5 30 30 H 1.09002 * 110.72343 * 80.94378 * 9 8 7 31 31 H 1.09004 * 110.72487 * 204.22826 * 9 8 7 32 32 H 0.97001 * 119.99796 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.47517 * 84.77859 * 21 20 4 34 34 H 1.08999 * 109.47443 * 204.78163 * 21 20 4 35 35 H 1.09004 * 109.47257 * 324.78338 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 -0.0031 5 6 4.8350 1.5989 -0.0064 6 1 5.6777 1.0693 0.4382 7 7 4.5618 2.8385 0.7527 8 6 5.3038 3.9159 0.0491 9 6 5.1085 3.5625 -1.4466 10 6 5.1755 2.0180 -1.4486 11 1 4.4433 1.6085 -2.1444 12 6 6.5613 1.5529 -1.8151 13 1 7.1555 1.0076 -1.0968 14 6 7.0701 1.8226 -3.0679 15 7 6.3463 2.4862 -3.9427 16 14 8.7881 1.2468 -3.5220 17 1 9.3899 0.5282 -2.3702 18 1 8.7112 0.3326 -4.6897 19 1 9.6288 2.4212 -3.8674 20 7 3.6088 -0.6341 0.0029 21 6 4.7899 -1.5008 0.0065 22 7 2.2742 -1.0598 0.0048 23 1 -0.3633 0.0042 1.0276 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3633 -0.8922 -0.5101 26 1 1.9922 2.1598 0.0004 27 1 3.5728 3.0371 0.7770 28 1 4.8713 4.8908 0.2738 29 1 6.3606 3.8922 0.3153 30 1 4.1368 3.9069 -1.8007 31 1 5.9119 3.9842 -2.0507 32 1 6.7042 2.6756 -4.8242 33 1 5.1385 -1.6358 1.0304 34 1 4.5307 -2.4699 -0.4199 35 1 5.5793 -1.0415 -0.5885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260165928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:50 Heat of formation + Delta-G solvation = 70.346243 kcal Electronic energy + Delta-G solvation = -17015.372070 eV Core-core repulsion = 14435.542873 eV Total energy + Delta-G solvation = -2579.829197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86938 -37.66354 -33.52902 -32.82726 -30.52628 -29.21216 -28.92179 -27.09356 -25.05244 -24.34716 -21.51509 -20.05567 -19.39071 -18.56770 -16.69346 -16.30806 -15.10197 -14.79620 -14.67825 -13.77144 -13.55431 -13.22656 -12.93024 -12.78808 -12.61176 -12.30531 -11.95260 -11.85538 -11.72810 -11.38423 -11.07538 -10.69310 -10.63856 -10.22701 -10.13438 -10.03832 -9.73061 -8.96477 -8.57536 -8.48184 -8.07906 -7.73024 -6.12772 -4.18714 2.39351 3.00158 3.21672 3.24436 3.30777 3.32981 4.33053 4.91753 5.04296 5.10926 5.22790 5.45876 5.54840 5.58934 5.79180 5.84810 5.90737 5.98485 6.09457 6.18293 6.19631 6.32922 6.36045 6.49666 6.75626 6.94904 7.02688 7.15632 7.43389 7.50958 7.53735 7.70491 7.80222 8.02212 8.23879 8.28989 8.83508 9.46221 10.95543 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026350 B = 0.008297 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.382915 B = 3374.034836 C = 3826.313039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.068 3.932 3 C -0.287 4.287 4 C 0.122 3.878 5 C 0.130 3.870 6 H 0.087 0.913 7 N -0.669 5.669 8 C 0.042 3.958 9 C -0.132 4.132 10 C 0.040 3.960 11 H 0.034 0.966 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 N -0.366 5.366 21 C 0.099 3.901 22 N -0.313 5.313 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.139 0.861 27 H 0.329 0.671 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -1.820 6.647 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C -0.317 4.317 4 C -0.007 4.007 5 C 0.019 3.981 6 H 0.105 0.895 7 N -0.298 5.298 8 C -0.087 4.087 9 C -0.171 4.171 10 C 0.020 3.980 11 H 0.052 0.948 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 N -0.147 5.147 21 C -0.043 4.043 22 N -0.136 5.136 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.977 -3.246 7.041 9.213 hybrid contribution 0.493 0.704 -1.319 1.575 sum -4.483 -2.542 5.721 7.700 Atomic orbital electron populations 1.20091 0.87289 1.02818 1.02322 1.22135 0.96486 0.91018 1.00137 1.20848 0.91159 0.99247 1.20413 1.21488 0.97326 0.84602 0.97304 1.21380 0.90806 0.89009 0.96884 0.89481 1.63085 1.13694 1.02658 1.50380 1.23109 0.99086 0.92702 0.93786 1.22985 1.00247 0.99145 0.94761 1.19818 0.97401 0.91948 0.88859 0.94824 1.21149 0.99443 1.36169 0.98541 0.92427 1.24974 0.97493 0.94986 0.96394 1.69987 1.36731 1.39534 1.05920 0.86574 0.84579 0.78612 0.78507 1.19665 1.21040 1.20904 1.48225 1.05103 1.04318 1.57085 1.21900 0.84678 0.94816 1.02900 1.77161 0.86561 1.22824 1.27103 0.91045 0.90751 0.91411 0.84343 0.85435 0.92503 0.90580 0.94828 0.89811 0.92934 0.91368 0.89789 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.45 36.00 0.38 -0.47 16 2 C 0.07 1.20 7.22 -82.41 -0.59 0.60 16 3 C -0.29 -5.32 9.75 -40.01 -0.39 -5.71 16 4 C 0.12 2.43 5.77 -82.27 -0.47 1.95 16 5 C 0.13 2.69 3.16 -67.79 -0.21 2.47 16 6 H 0.09 1.85 6.93 -51.93 -0.36 1.49 16 7 N -0.67 -12.57 7.39 -104.33 -0.77 -13.34 16 8 C 0.04 0.80 7.55 -1.90 -0.01 0.79 16 9 C -0.13 -2.95 6.17 -24.87 -0.15 -3.11 16 10 C 0.04 0.96 2.50 -90.41 -0.23 0.73 16 11 H 0.03 0.92 7.68 -51.93 -0.40 0.52 16 12 C -0.51 -13.28 8.49 -34.44 -0.29 -13.57 16 13 H 0.06 1.45 7.35 -52.49 -0.39 1.07 16 14 C 0.06 1.70 5.10 -17.82 -0.09 1.61 16 15 N -0.88 -24.61 12.15 55.43 0.67 -23.94 16 16 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 N -0.37 -7.09 4.01 -63.89 -0.26 -7.34 16 21 C 0.10 1.56 10.98 59.84 0.66 2.22 16 22 N -0.31 -6.08 12.58 33.67 0.42 -5.65 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.14 2.30 7.15 -52.49 -0.38 1.92 16 27 H 0.33 5.73 6.74 -39.29 -0.26 5.46 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 2.09 6.78 -51.93 -0.35 1.74 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.68 7.83 -51.93 -0.41 1.27 16 LS Contribution 288.01 15.07 4.34 4.34 Total: -1.00 -29.52 288.01 -7.09 -36.61 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.06 Total: 6.38 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.42 Total: -12.48 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.07 Total: -50.27 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.52 -7.09 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.958 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds