Wall clock time and date at job start Mon Mar 30 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39866 * 125.90048 * 2 1 4 4 C 1.35315 * 107.92258 * 180.14016 * 3 2 1 5 5 C 1.50697 * 126.12669 * 179.90103 * 4 3 2 6 6 H 1.09005 * 109.91016 * 154.16500 * 5 4 3 7 7 N 1.47906 * 109.91840 * 33.06349 * 5 4 3 8 8 C 1.48536 * 105.81755 * 215.31731 * 7 5 4 9 9 C 1.54930 * 103.23133 * 39.20363 * 8 7 5 10 10 C 1.54001 * 109.91935 * 275.47107 * 5 4 3 11 11 H 1.08994 * 110.30695 * 1.66134 * 10 5 4 12 12 C 1.50701 * 110.30694 * 239.59419 * 10 5 4 13 13 H 1.07999 * 120.00111 * 0.02562 * 12 10 5 14 14 C 1.37878 * 119.99543 * 179.97438 * 12 10 5 15 15 N 1.31513 * 120.00248 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99872 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47067 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47081 * 119.99931 * 16 14 12 19 19 H 1.48499 * 109.47569 * 240.00048 * 16 14 12 20 20 N 1.34946 * 107.74668 * 359.64360 * 4 3 2 21 21 C 1.46494 * 126.04082 * 180.20577 * 20 4 3 22 22 N 1.30838 * 125.90023 * 179.73790 * 2 1 3 23 23 H 1.08996 * 109.47155 * 270.23490 * 1 2 3 24 24 H 1.09001 * 109.47156 * 30.23505 * 1 2 3 25 25 H 1.09004 * 109.46912 * 150.24198 * 1 2 3 26 26 H 1.08002 * 126.03570 * 0.02562 * 3 2 1 27 27 H 1.00898 * 110.99912 * 335.82562 * 7 5 4 28 28 H 1.08998 * 110.66597 * 157.64274 * 8 7 5 29 29 H 1.09005 * 110.66372 * 280.76726 * 8 7 5 30 30 H 1.09002 * 110.72343 * 80.94378 * 9 8 7 31 31 H 1.09004 * 110.72487 * 204.22826 * 9 8 7 32 32 H 0.97001 * 119.99796 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.47517 * 84.77859 * 21 20 4 34 34 H 1.08999 * 109.47443 * 204.78163 * 21 20 4 35 35 H 1.09004 * 109.47257 * 324.78338 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 -0.0031 5 6 4.8350 1.5989 -0.0064 6 1 5.6777 1.0693 0.4382 7 7 4.5618 2.8385 0.7527 8 6 5.3038 3.9159 0.0491 9 6 5.1085 3.5625 -1.4466 10 6 5.1755 2.0180 -1.4486 11 1 4.4433 1.6085 -2.1444 12 6 6.5613 1.5529 -1.8151 13 1 7.1555 1.0076 -1.0968 14 6 7.0701 1.8226 -3.0679 15 7 6.3463 2.4862 -3.9427 16 14 8.7881 1.2468 -3.5220 17 1 9.3899 0.5282 -2.3702 18 1 8.7112 0.3326 -4.6897 19 1 9.6288 2.4212 -3.8674 20 7 3.6088 -0.6341 0.0029 21 6 4.7899 -1.5008 0.0065 22 7 2.2742 -1.0598 0.0048 23 1 -0.3633 0.0042 1.0276 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3633 -0.8922 -0.5101 26 1 1.9922 2.1598 0.0004 27 1 3.5728 3.0371 0.7770 28 1 4.8713 4.8908 0.2738 29 1 6.3606 3.8922 0.3153 30 1 4.1368 3.9069 -1.8007 31 1 5.9119 3.9842 -2.0507 32 1 6.7042 2.6756 -4.8242 33 1 5.1385 -1.6358 1.0304 34 1 4.5307 -2.4699 -0.4199 35 1 5.5793 -1.0415 -0.5885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260165928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:50 Heat of formation + Delta-G solvation = 50.484507 kcal Electronic energy + Delta-G solvation = -17016.233339 eV Core-core repulsion = 14435.542873 eV Total energy + Delta-G solvation = -2580.690467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.30567 -39.33492 -34.85009 -34.79966 -32.03620 -30.83765 -30.31272 -28.69756 -26.53429 -26.07079 -23.09366 -21.80735 -20.80260 -20.13691 -18.45501 -17.98541 -16.81291 -16.32115 -16.26493 -15.37825 -15.15609 -14.53539 -14.31360 -14.29217 -14.09433 -13.68092 -13.58920 -13.18643 -13.02853 -12.94265 -12.79580 -12.50837 -12.37835 -11.99293 -11.83018 -11.64079 -11.42955 -10.91743 -10.50677 -10.03038 -9.55591 -9.28825 -8.16509 -6.28105 0.93201 1.38281 1.41499 1.51415 1.65572 1.85238 2.39825 3.14321 3.43635 3.64167 3.70762 4.12447 4.30185 4.37520 4.45295 4.46591 4.52608 4.64516 4.69634 4.74932 4.84313 4.87194 4.96940 5.08267 5.18766 5.21716 5.38553 5.54907 5.72366 5.76472 5.84375 5.87791 6.09751 6.30735 6.53178 6.81253 6.82806 7.40129 8.91800 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026350 B = 0.008297 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.382915 B = 3374.034836 C = 3826.313039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.065 3.935 3 C -0.293 4.293 4 C 0.097 3.903 5 C 0.145 3.855 6 H 0.079 0.921 7 N -0.659 5.659 8 C 0.054 3.946 9 C -0.128 4.128 10 C 0.041 3.959 11 H -0.010 1.010 12 C -0.523 4.523 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.262 1.262 18 H -0.286 1.286 19 H -0.281 1.281 20 N -0.378 5.378 21 C 0.094 3.906 22 N -0.335 5.335 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.340 0.660 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.260 0.740 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -1.797 7.886 10.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.322 4.322 4 C -0.032 4.032 5 C 0.033 3.967 6 H 0.097 0.903 7 N -0.289 5.289 8 C -0.075 4.075 9 C -0.168 4.168 10 C 0.021 3.979 11 H 0.008 0.992 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.777 3.223 17 H -0.185 1.185 18 H -0.212 1.212 19 H -0.207 1.207 20 N -0.160 5.160 21 C -0.047 4.047 22 N -0.158 5.158 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.173 0.827 27 H 0.158 0.842 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.419 -3.232 8.300 10.426 hybrid contribution 0.571 0.684 -1.714 1.932 sum -4.848 -2.547 6.586 8.565 Atomic orbital electron populations 1.20273 0.83877 1.04047 1.04100 1.22902 0.98622 0.90088 0.98484 1.21187 0.90865 1.00469 1.19704 1.21513 0.97591 0.85169 0.98886 1.21020 0.91176 0.89825 0.94651 0.90306 1.63041 1.14564 1.01840 1.49412 1.23051 0.99339 0.94307 0.90834 1.22847 0.99055 0.97926 0.96990 1.19692 0.95344 0.92859 0.90040 0.99229 1.21468 1.00299 1.35684 0.98671 0.92235 1.25717 1.01008 0.95182 0.96475 1.70112 1.38403 1.40884 1.06201 0.85603 0.80349 0.78097 0.78251 1.18544 1.21186 1.20657 1.48524 1.05833 1.04442 1.57161 1.22052 0.83568 0.94843 1.04207 1.77129 0.86769 1.23866 1.28043 0.88866 0.88955 0.90755 0.82713 0.84223 0.89030 0.91016 0.94879 0.92744 0.93088 0.89099 0.88315 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.45 71.24 0.74 -0.72 16 2 C 0.06 2.18 7.22 43.10 0.31 2.49 16 3 C -0.29 -10.49 9.75 21.99 0.21 -10.27 16 4 C 0.10 3.86 5.77 41.40 0.24 4.09 16 5 C 0.14 5.94 3.16 44.31 0.14 6.08 16 6 H 0.08 3.34 6.93 -2.38 -0.02 3.33 16 7 N -0.66 -23.68 7.39 -484.00 -3.58 -27.25 16 8 C 0.05 1.95 7.55 86.65 0.65 2.61 16 9 C -0.13 -5.80 6.17 31.80 0.20 -5.60 16 10 C 0.04 2.01 2.50 -10.66 -0.03 1.98 16 11 H -0.01 -0.60 7.68 -2.39 -0.02 -0.62 16 12 C -0.52 -27.41 8.49 25.60 0.22 -27.19 16 13 H 0.06 3.02 7.35 -2.91 -0.02 3.00 16 14 C 0.02 0.83 5.10 84.65 0.43 1.26 16 15 N -0.92 -52.29 12.15 21.45 0.26 -52.03 16 16 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 N -0.38 -14.50 4.01 -356.04 -1.43 -15.93 16 21 C 0.09 2.95 10.98 127.77 1.40 4.35 16 22 N -0.33 -12.66 12.58 -47.39 -0.60 -13.26 16 23 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.16 4.84 7.15 -2.91 -0.02 4.82 16 27 H 0.34 11.08 6.74 -89.70 -0.60 10.48 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 2.77 6.78 -2.39 -0.02 2.75 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 2.89 7.83 -2.38 -0.02 2.87 16 Total: -1.00 -63.81 288.01 1.69 -62.12 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.48 Total: 23.01 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.52 Total: -20.93 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -5.34 Total: -108.48 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.81 1.69 -62.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.605 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds