Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39869 * 125.90184 * 2 1 4 4 C 1.35321 * 107.92204 * 180.14069 * 3 2 1 5 5 C 1.50698 * 126.12549 * 179.90638 * 4 3 2 6 6 N 1.46898 * 109.46707 * 264.71473 * 5 4 3 7 7 C 1.47841 * 111.00467 * 68.85468 * 6 5 4 8 8 C 1.54905 * 104.79649 * 146.36284 * 7 6 5 9 9 C 1.55137 * 101.65303 * 322.92809 * 8 7 6 10 10 C 1.47450 * 110.99843 * 189.69684 * 6 5 4 11 11 H 1.09001 * 109.88707 * 117.17465 * 10 6 5 12 12 C 1.50696 * 109.88628 * 356.14963 * 10 6 5 13 13 H 1.08002 * 120.00032 * 294.92403 * 12 10 6 14 14 C 1.37877 * 120.00530 * 114.93212 * 12 10 6 15 15 N 1.31522 * 119.99659 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00306 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.46681 * 269.99319 * 16 14 12 18 18 H 1.48495 * 109.47452 * 29.99112 * 16 14 12 19 19 H 1.48500 * 109.47161 * 149.99800 * 16 14 12 20 20 N 1.34942 * 107.74442 * 359.64144 * 4 3 2 21 21 H 0.97000 * 126.03822 * 180.21091 * 20 4 3 22 22 N 1.30840 * 125.89674 * 179.73552 * 2 1 3 23 23 H 1.09003 * 109.46948 * 270.23662 * 1 2 3 24 24 H 1.08993 * 109.47314 * 30.23404 * 1 2 3 25 25 H 1.08998 * 109.47278 * 150.23817 * 1 2 3 26 26 H 1.08001 * 126.03861 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47158 * 144.71381 * 5 4 3 28 28 H 1.08996 * 109.47291 * 24.71304 * 5 4 3 29 29 H 1.09004 * 110.37583 * 265.19401 * 7 6 5 30 30 H 1.08996 * 110.37208 * 27.41886 * 7 6 5 31 31 H 1.08999 * 110.99234 * 81.02699 * 8 7 6 32 32 H 1.09000 * 110.98742 * 204.80076 * 8 7 6 33 33 H 1.09001 * 110.71021 * 277.27186 * 9 8 7 34 34 H 1.09000 * 110.70266 * 154.03620 * 9 8 7 35 35 H 0.96993 * 119.99719 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 -0.0032 5 6 4.8351 1.5988 -0.0063 6 7 5.3030 1.7823 -1.3866 7 6 4.3483 2.5993 -2.1656 8 6 5.2304 3.4086 -3.1487 9 6 6.4723 3.7192 -2.2724 10 6 6.6198 2.4452 -1.4144 11 1 7.3605 1.7800 -1.8582 12 6 7.0370 2.8153 -0.0144 13 1 6.4708 3.5476 0.5420 14 6 8.1417 2.2193 0.5562 15 7 8.8310 1.3273 -0.1213 16 14 8.6583 2.6776 2.2918 17 1 9.6089 3.8175 2.2405 18 1 7.4605 3.0670 3.0783 19 1 9.3165 1.5128 2.9362 20 7 3.6088 -0.6341 0.0029 21 1 4.3908 -1.2080 0.0054 22 7 2.2741 -1.0599 0.0049 23 1 -0.3633 0.0042 1.0277 24 1 -0.3633 0.8878 -0.5174 25 1 -0.3634 -0.8921 -0.5101 26 1 1.9923 2.1598 0.0004 27 1 5.6227 1.1323 0.5854 28 1 4.5832 2.5681 0.4238 29 1 3.6592 1.9574 -2.7145 30 1 3.7974 3.2704 -1.5068 31 1 5.5043 2.8057 -4.0146 32 1 4.7300 4.3265 -3.4572 33 1 6.2912 4.5897 -1.6419 34 1 7.3549 3.8694 -2.8943 35 1 9.6079 0.9078 0.2802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260195545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 67.607066 kcal Electronic energy + Delta-G solvation = -16828.159525 eV Core-core repulsion = 14248.211548 eV Total energy + Delta-G solvation = -2579.947977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74511 -37.96064 -32.92563 -32.75407 -31.53903 -29.08910 -28.25051 -27.52322 -24.68592 -24.36704 -20.44416 -20.01643 -19.41380 -19.22007 -17.08610 -16.02527 -15.35632 -14.65523 -14.46390 -14.07985 -13.44148 -13.34599 -12.85784 -12.65520 -12.54877 -12.43173 -12.06399 -11.86125 -11.55694 -11.04201 -10.72233 -10.60201 -10.38470 -10.27312 -10.14467 -10.06516 -9.42411 -9.27033 -8.86785 -8.68124 -8.12385 -7.21313 -6.16556 -4.25945 2.38796 3.17349 3.20030 3.27063 3.29295 3.38631 4.27212 4.94154 5.06815 5.18588 5.43576 5.54548 5.69627 5.73680 5.76181 5.88439 5.97044 6.03914 6.21465 6.25141 6.29533 6.46005 6.60814 6.70761 6.77150 6.83665 6.95907 7.05891 7.11898 7.62413 7.77563 7.79453 7.80761 8.18274 8.34315 8.43988 8.89104 9.37712 10.86266 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.008184 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.133935 B = 3420.438133 C = 4166.270445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.067 3.933 3 C -0.288 4.288 4 C 0.126 3.874 5 C 0.130 3.870 6 N -0.526 5.526 7 C 0.046 3.954 8 C -0.134 4.134 9 C -0.131 4.131 10 C 0.183 3.817 11 H 0.085 0.915 12 C -0.534 4.534 13 H 0.055 0.945 14 C 0.074 3.926 15 N -0.880 5.880 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.272 1.272 19 H -0.285 1.285 20 N -0.464 5.464 21 H 0.438 0.562 22 N -0.313 5.313 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.137 0.863 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 0.747 -0.764 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.318 4.318 4 C -0.005 4.005 5 C 0.000 4.000 6 N -0.252 5.252 7 C -0.082 4.082 8 C -0.172 4.172 9 C -0.170 4.170 10 C 0.079 3.921 11 H 0.103 0.897 12 C -0.573 4.573 13 H 0.074 0.926 14 C -0.131 4.131 15 N -0.517 5.517 16 Si 0.714 3.286 17 H -0.204 1.204 18 H -0.196 1.196 19 H -0.210 1.210 20 N -0.172 5.172 21 H 0.282 0.718 22 N -0.138 5.138 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.745 -1.143 -0.968 9.859 hybrid contribution 0.764 1.683 1.308 2.264 sum -8.981 0.540 0.339 9.004 Atomic orbital electron populations 1.20093 0.87439 1.02744 1.02384 1.22183 0.96531 0.91123 1.00092 1.21032 0.91293 0.99235 1.20232 1.21770 0.97640 0.84888 0.96204 1.20652 0.90564 0.95617 0.93132 1.64033 1.03710 1.47609 1.09817 1.22911 0.95181 0.94507 0.95619 1.22700 0.97622 0.98639 0.98219 1.22931 0.95772 1.00750 0.97520 1.20288 0.86683 0.90283 0.94890 0.89726 1.21338 1.12351 1.23909 0.99716 0.92644 1.25009 0.96077 0.94274 0.97702 1.69899 1.18114 1.26498 1.37198 0.86677 0.79077 0.78269 0.84587 1.20390 1.19648 1.21036 1.46231 1.06693 1.05492 1.58759 0.71778 1.77134 0.87042 1.22733 1.26885 0.91046 0.90824 0.91407 0.84472 0.88186 0.92718 0.92476 0.94795 0.91945 0.92717 0.92695 0.92767 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.45 36.00 0.38 -0.42 16 2 C 0.07 1.09 7.22 -82.41 -0.59 0.50 16 3 C -0.29 -4.93 10.46 -40.01 -0.42 -5.35 16 4 C 0.13 2.34 6.23 -82.27 -0.51 1.83 16 5 C 0.13 2.66 4.25 -4.98 -0.02 2.63 16 6 N -0.53 -11.24 5.15 -226.16 -1.17 -12.41 16 7 C 0.05 0.86 6.02 -2.30 -0.01 0.85 16 8 C -0.13 -2.38 7.08 -24.60 -0.17 -2.55 16 9 C -0.13 -2.69 6.46 -24.91 -0.16 -2.85 16 10 C 0.18 4.33 3.71 -67.88 -0.25 4.08 16 11 H 0.08 2.30 6.97 -51.93 -0.36 1.93 16 12 C -0.53 -13.43 5.51 -34.44 -0.19 -13.62 16 13 H 0.06 1.40 7.29 -52.49 -0.38 1.02 16 14 C 0.07 1.92 5.37 -17.82 -0.10 1.82 16 15 N -0.88 -24.01 12.63 55.43 0.70 -23.31 16 16 Si 0.89 20.05 29.54 -169.99 -5.02 15.02 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 N -0.46 -8.39 7.36 33.48 0.25 -8.15 16 21 H 0.44 7.24 8.96 -182.60 -1.64 5.60 16 22 N -0.31 -5.66 12.70 33.67 0.43 -5.23 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.10 2.26 6.90 -51.93 -0.36 1.90 16 28 H 0.05 1.13 7.16 -51.93 -0.37 0.76 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.62 7.63 -51.93 -0.40 0.22 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 287.56 15.07 4.33 4.33 Total: -1.00 -27.73 287.56 -8.97 -36.69 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.43 Total: 6.12 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.06 Total: -13.08 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.21 Total: -49.09 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.73 -8.97 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.301 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds