Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39869 * 125.90184 * 2 1 4 4 C 1.35321 * 107.92204 * 180.14069 * 3 2 1 5 5 C 1.50698 * 126.12549 * 179.90638 * 4 3 2 6 6 N 1.46898 * 109.46707 * 264.71473 * 5 4 3 7 7 C 1.47841 * 111.00467 * 68.85468 * 6 5 4 8 8 C 1.54905 * 104.79649 * 146.36284 * 7 6 5 9 9 C 1.55137 * 101.65303 * 322.92809 * 8 7 6 10 10 C 1.47450 * 110.99843 * 189.69684 * 6 5 4 11 11 H 1.09001 * 109.88707 * 117.17465 * 10 6 5 12 12 C 1.50696 * 109.88628 * 356.14963 * 10 6 5 13 13 H 1.08002 * 120.00032 * 294.92403 * 12 10 6 14 14 C 1.37877 * 120.00530 * 114.93212 * 12 10 6 15 15 N 1.31522 * 119.99659 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00306 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.46681 * 269.99319 * 16 14 12 18 18 H 1.48495 * 109.47452 * 29.99112 * 16 14 12 19 19 H 1.48500 * 109.47161 * 149.99800 * 16 14 12 20 20 N 1.34942 * 107.74442 * 359.64144 * 4 3 2 21 21 H 0.97000 * 126.03822 * 180.21091 * 20 4 3 22 22 N 1.30840 * 125.89674 * 179.73552 * 2 1 3 23 23 H 1.09003 * 109.46948 * 270.23662 * 1 2 3 24 24 H 1.08993 * 109.47314 * 30.23404 * 1 2 3 25 25 H 1.08998 * 109.47278 * 150.23817 * 1 2 3 26 26 H 1.08001 * 126.03861 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47158 * 144.71381 * 5 4 3 28 28 H 1.08996 * 109.47291 * 24.71304 * 5 4 3 29 29 H 1.09004 * 110.37583 * 265.19401 * 7 6 5 30 30 H 1.08996 * 110.37208 * 27.41886 * 7 6 5 31 31 H 1.08999 * 110.99234 * 81.02699 * 8 7 6 32 32 H 1.09000 * 110.98742 * 204.80076 * 8 7 6 33 33 H 1.09001 * 110.71021 * 277.27186 * 9 8 7 34 34 H 1.09000 * 110.70266 * 154.03620 * 9 8 7 35 35 H 0.96993 * 119.99719 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 -0.0032 5 6 4.8351 1.5988 -0.0063 6 7 5.3030 1.7823 -1.3866 7 6 4.3483 2.5993 -2.1656 8 6 5.2304 3.4086 -3.1487 9 6 6.4723 3.7192 -2.2724 10 6 6.6198 2.4452 -1.4144 11 1 7.3605 1.7800 -1.8582 12 6 7.0370 2.8153 -0.0144 13 1 6.4708 3.5476 0.5420 14 6 8.1417 2.2193 0.5562 15 7 8.8310 1.3273 -0.1213 16 14 8.6583 2.6776 2.2918 17 1 9.6089 3.8175 2.2405 18 1 7.4605 3.0670 3.0783 19 1 9.3165 1.5128 2.9362 20 7 3.6088 -0.6341 0.0029 21 1 4.3908 -1.2080 0.0054 22 7 2.2741 -1.0599 0.0049 23 1 -0.3633 0.0042 1.0277 24 1 -0.3633 0.8878 -0.5174 25 1 -0.3634 -0.8921 -0.5101 26 1 1.9923 2.1598 0.0004 27 1 5.6227 1.1323 0.5854 28 1 4.5832 2.5681 0.4238 29 1 3.6592 1.9574 -2.7145 30 1 3.7974 3.2704 -1.5068 31 1 5.5043 2.8057 -4.0146 32 1 4.7300 4.3265 -3.4572 33 1 6.2912 4.5897 -1.6419 34 1 7.3549 3.8694 -2.8943 35 1 9.6079 0.9078 0.2802 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260195545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = 49.390679 kcal Electronic energy + Delta-G solvation = -16828.949447 eV Core-core repulsion = 14248.211548 eV Total energy + Delta-G solvation = -2580.737898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11473 -39.62420 -34.69767 -34.27686 -32.95007 -30.63738 -29.96237 -28.63355 -26.28080 -26.22389 -21.92908 -21.51087 -21.06960 -20.58589 -18.79332 -17.68059 -17.07534 -16.29886 -16.07256 -15.51564 -14.98477 -14.70681 -14.25514 -14.24410 -13.85031 -13.79752 -13.49115 -13.20223 -13.07333 -12.83710 -12.42464 -12.33367 -11.97463 -11.85493 -11.80154 -11.45683 -11.21440 -11.09230 -10.68778 -10.16036 -9.51849 -8.94041 -8.12905 -6.28091 0.99170 1.37566 1.40896 1.48872 1.88380 2.04075 2.37534 3.05112 3.61191 3.89326 3.97723 4.08316 4.20270 4.36538 4.43219 4.67223 4.73623 4.81876 4.89411 4.92637 4.95904 5.07984 5.09795 5.16181 5.18198 5.31772 5.37492 5.45129 5.60099 5.82293 5.86898 6.02413 6.41647 6.58594 6.63309 6.84203 6.95394 7.37432 8.88676 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.008184 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.133935 B = 3420.438133 C = 4166.270445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.067 3.933 3 C -0.284 4.284 4 C 0.109 3.891 5 C 0.145 3.855 6 N -0.539 5.539 7 C 0.049 3.951 8 C -0.122 4.122 9 C -0.128 4.128 10 C 0.180 3.820 11 H 0.042 0.958 12 C -0.532 4.532 13 H 0.054 0.946 14 C 0.028 3.972 15 N -0.917 5.917 16 Si 0.944 3.056 17 H -0.275 1.275 18 H -0.265 1.265 19 H -0.286 1.286 20 N -0.473 5.473 21 H 0.439 0.561 22 N -0.332 5.332 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 1.815 -0.714 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.314 4.314 4 C -0.022 4.022 5 C 0.015 3.985 6 N -0.264 5.264 7 C -0.079 4.079 8 C -0.159 4.159 9 C -0.168 4.168 10 C 0.075 3.925 11 H 0.060 0.940 12 C -0.571 4.571 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.556 5.556 16 Si 0.770 3.230 17 H -0.200 1.200 18 H -0.190 1.190 19 H -0.212 1.212 20 N -0.181 5.181 21 H 0.283 0.717 22 N -0.157 5.157 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.174 0.826 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.973 -0.064 -0.918 12.009 hybrid contribution 1.375 1.336 1.259 2.294 sum -10.599 1.272 0.341 10.680 Atomic orbital electron populations 1.20283 0.84019 1.04239 1.03962 1.22935 0.98604 0.90131 0.98223 1.21314 0.90603 1.00465 1.19007 1.21565 0.97539 0.85044 0.98012 1.20328 0.90453 0.95537 0.92148 1.63839 1.03573 1.48297 1.10690 1.22946 0.94816 0.94556 0.95584 1.22667 0.95903 0.99940 0.97433 1.22808 0.97366 0.98983 0.97595 1.20104 0.87070 0.90870 0.94475 0.93978 1.21526 1.11983 1.23190 1.00445 0.92816 1.25671 0.96372 0.94363 1.00947 1.70030 1.18794 1.28003 1.38734 0.85763 0.78750 0.77792 0.80685 1.20045 1.18975 1.21222 1.46298 1.07092 1.05392 1.59270 0.71685 1.77139 0.86992 1.23819 1.27782 0.89309 0.88603 0.90669 0.82586 0.91287 0.93027 0.91704 0.93808 0.91634 0.89457 0.92682 0.93011 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.45 71.23 0.74 -0.57 16 2 C 0.07 2.03 7.22 43.10 0.31 2.35 16 3 C -0.28 -9.09 10.46 21.99 0.23 -8.86 16 4 C 0.11 3.98 6.23 41.41 0.26 4.23 16 5 C 0.15 5.96 4.25 85.56 0.36 6.32 16 6 N -0.54 -22.99 5.15 -869.45 -4.48 -27.47 16 7 C 0.05 1.73 6.02 86.77 0.52 2.25 16 8 C -0.12 -4.02 7.08 31.98 0.23 -3.80 16 9 C -0.13 -5.20 6.46 31.77 0.21 -4.99 16 10 C 0.18 8.68 3.71 44.51 0.16 8.84 16 11 H 0.04 2.38 6.97 -2.39 -0.02 2.37 16 12 C -0.53 -27.18 5.51 25.60 0.14 -27.04 16 13 H 0.05 2.71 7.29 -2.91 -0.02 2.69 16 14 C 0.03 1.45 5.37 84.65 0.45 1.90 16 15 N -0.92 -51.72 12.63 21.45 0.27 -51.45 16 16 Si 0.94 41.69 29.54 68.60 2.03 43.72 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 20 N -0.47 -17.04 7.36 -48.00 -0.35 -17.40 16 21 H 0.44 14.92 8.96 -213.33 -1.91 13.01 16 22 N -0.33 -11.61 12.70 -47.39 -0.60 -12.21 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 27 H 0.07 3.23 6.90 -2.39 -0.02 3.21 16 28 H 0.05 2.11 7.16 -2.39 -0.02 2.09 16 29 H 0.06 2.21 8.14 -2.38 -0.02 2.20 16 30 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 2.21 7.84 -2.39 -0.02 2.19 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -59.83 287.56 -0.35 -60.18 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.83 Total: 23.99 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 3.62 Total: -19.36 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -5.17 Total: -108.53 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -59.83 -0.35 -60.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.574 kcal (2) G-P(sol) polarization free energy of solvation -59.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds