Wall clock time and date at job start Mon Mar 30 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03670 * 2 1 4 4 C 1.35322 * 107.74515 * 180.15129 * 3 2 1 5 5 C 1.50700 * 126.03708 * 179.87770 * 4 3 2 6 6 C 1.53002 * 109.90615 * 270.81479 * 5 4 3 7 7 N 1.47899 * 110.08511 * 32.02505 * 5 4 3 8 8 C 1.48538 * 105.82096 * 144.77264 * 7 5 4 9 9 C 1.54933 * 103.22579 * 320.79703 * 8 7 5 10 10 C 1.53997 * 109.91566 * 149.71565 * 5 4 3 11 11 H 1.09004 * 110.30998 * 358.13713 * 10 5 4 12 12 C 1.50704 * 110.31176 * 120.30430 * 10 5 4 13 13 H 1.08003 * 119.99579 * 359.97438 * 12 10 5 14 14 C 1.37874 * 120.00224 * 179.97438 * 12 10 5 15 15 N 1.31511 * 119.99805 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00102 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47154 * 60.00276 * 16 14 12 18 18 H 1.48497 * 109.47238 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47286 * 299.99999 * 16 14 12 20 20 C 1.39864 * 107.91886 * 359.61360 * 4 3 2 21 21 N 1.30834 * 108.20525 * 0.24043 * 20 4 3 22 22 H 1.09000 * 109.46724 * 270.30236 * 1 2 3 23 23 H 1.08996 * 109.47219 * 30.30615 * 1 2 3 24 24 H 1.08997 * 109.46939 * 150.30641 * 1 2 3 25 25 H 1.08003 * 126.12955 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47241 * 298.89917 * 6 5 4 27 27 H 1.08994 * 109.47166 * 58.90071 * 6 5 4 28 28 H 1.09001 * 109.47076 * 178.90321 * 6 5 4 29 29 H 1.00900 * 111.00061 * 24.26348 * 7 5 4 30 30 H 1.09007 * 110.66246 * 79.22764 * 8 7 5 31 31 H 1.08993 * 110.66671 * 202.18915 * 8 7 5 32 32 H 1.09007 * 110.72333 * 279.05054 * 9 8 7 33 33 H 1.09004 * 110.72411 * 155.77248 * 9 8 7 34 34 H 0.96998 * 120.00121 * 180.02562 * 15 14 12 35 35 H 1.07999 * 125.90176 * 180.22197 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7680 1.5453 -0.0073 6 6 5.1752 1.8650 -1.4470 7 7 4.4959 2.7985 0.7295 8 6 5.7666 3.1500 1.4138 9 6 6.3066 1.7767 1.8858 10 6 5.9252 0.8358 0.7200 11 1 5.5953 -0.1291 1.1050 12 6 7.0963 0.6558 -0.2114 13 1 7.0352 1.0090 -1.2302 14 6 8.2455 0.0401 0.2371 15 7 8.3197 -0.3904 1.4775 16 14 9.6972 -0.1824 -0.9171 17 1 10.1629 1.1466 -1.3888 18 1 10.8015 -0.8663 -0.1975 19 1 9.2818 -1.0036 -2.0825 20 6 3.5347 -0.7321 0.0034 21 7 2.2892 -1.1328 0.0054 22 1 -0.3633 0.0054 1.0277 23 1 -0.3633 0.8872 -0.5186 24 1 -0.3633 -0.8927 -0.5091 25 1 1.9281 2.1193 0.0004 26 1 5.4152 0.9397 -1.9707 27 1 4.3515 2.3666 -1.9547 28 1 6.0492 2.5164 -1.4413 29 1 3.7494 2.6711 1.3963 30 1 6.4620 3.6179 0.7169 31 1 5.5772 3.8048 2.2642 32 1 5.8164 1.4659 2.8085 33 1 7.3884 1.8114 2.0154 34 1 9.1283 -0.8232 1.7932 35 1 4.4054 -1.3711 0.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260209857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:02 Heat of formation + Delta-G solvation = 88.759890 kcal Electronic energy + Delta-G solvation = -17189.898454 eV Core-core repulsion = 14610.867732 eV Total energy + Delta-G solvation = -2579.030721 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83492 -37.98479 -32.96226 -32.64915 -30.97389 -29.31244 -28.23298 -26.41101 -24.97231 -23.87877 -20.91403 -20.74653 -19.44213 -18.23925 -16.75634 -15.81507 -15.13247 -15.03917 -14.67633 -13.85067 -13.51482 -12.88887 -12.84958 -12.77143 -12.25939 -12.09750 -11.96417 -11.77855 -11.37723 -10.98697 -10.74458 -10.61941 -10.06496 -9.99436 -9.84623 -9.75449 -9.28545 -8.94920 -8.58182 -8.29643 -7.81496 -7.67908 -5.95256 -3.97727 2.32320 2.91667 3.35399 3.38700 3.40427 3.43271 4.48700 4.77273 5.10453 5.20977 5.29918 5.37339 5.42226 5.57252 5.87247 6.07161 6.24794 6.29524 6.46319 6.49791 6.58611 6.62452 6.75359 6.92625 7.09387 7.17987 7.29367 7.36357 7.44148 7.69010 7.72947 7.91681 8.00835 8.16690 8.27019 8.53324 9.04821 9.66718 11.13621 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.008132 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.071165 B = 3442.509825 C = 3799.938585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.390 5.390 3 C 0.045 3.955 4 C -0.207 4.207 5 C 0.171 3.829 6 C -0.098 4.098 7 N -0.673 5.673 8 C 0.044 3.956 9 C -0.133 4.133 10 C 0.039 3.961 11 H 0.035 0.965 12 C -0.514 4.514 13 H 0.072 0.928 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.070 3.930 21 N -0.312 5.312 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.169 0.831 26 H 0.057 0.943 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.320 0.680 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.258 0.742 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 3.876 -1.601 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.174 5.174 3 C -0.100 4.100 4 C -0.219 4.219 5 C 0.079 3.921 6 C -0.156 4.156 7 N -0.300 5.300 8 C -0.085 4.085 9 C -0.172 4.172 10 C 0.019 3.981 11 H 0.053 0.947 12 C -0.552 4.552 13 H 0.090 0.910 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.713 3.287 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.203 1.203 20 C -0.116 4.116 21 N -0.134 5.134 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.187 0.813 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.293 3.262 -2.053 12.884 hybrid contribution 1.456 -0.156 0.313 1.497 sum -10.838 3.106 -1.740 11.408 Atomic orbital electron populations 1.21683 0.75299 1.03789 1.02633 1.48369 1.06021 1.04161 1.58823 1.22224 0.91012 0.92892 1.03889 1.20462 0.94190 0.94170 1.13054 1.20133 0.90574 0.86055 0.95304 1.21603 0.99133 1.00579 0.94289 1.62993 1.06904 1.32034 1.28032 1.23039 0.91482 0.97640 0.96388 1.22974 1.02323 0.94488 0.97443 1.19857 0.91761 0.94195 0.92263 0.94732 1.21532 0.98068 1.37515 0.98073 0.90978 1.25001 0.98500 0.95665 0.94885 1.69983 1.27869 1.39841 1.15262 0.86771 0.82498 0.78281 0.81132 1.20359 1.21566 1.20323 1.23981 0.94607 0.95220 0.97832 1.77300 1.01946 1.08128 1.26009 0.91480 0.90055 0.89873 0.81338 0.92365 0.95615 0.92235 0.86517 0.90911 0.93223 0.95416 0.90198 0.93199 0.79562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.08 11.47 59.85 0.69 1.77 16 2 N -0.39 -6.06 4.01 -68.16 -0.27 -6.34 16 3 C 0.04 0.71 10.48 -17.22 -0.18 0.53 16 4 C -0.21 -3.92 4.72 -105.05 -0.50 -4.42 16 5 C 0.17 3.46 1.09 -131.68 -0.14 3.32 16 6 C -0.10 -1.98 7.29 37.16 0.27 -1.71 16 7 N -0.67 -12.45 6.85 -97.62 -0.67 -13.12 16 8 C 0.04 0.85 7.54 -1.90 -0.01 0.84 16 9 C -0.13 -3.06 6.16 -24.87 -0.15 -3.21 16 10 C 0.04 0.93 2.33 -90.41 -0.21 0.72 16 11 H 0.03 0.91 6.22 -51.93 -0.32 0.59 16 12 C -0.51 -13.33 7.62 -34.44 -0.26 -13.60 16 13 H 0.07 1.83 4.70 -52.48 -0.25 1.59 16 14 C 0.06 1.63 5.09 -17.82 -0.09 1.54 16 15 N -0.89 -25.14 12.15 55.43 0.67 -24.47 16 16 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.07 1.38 10.77 -17.37 -0.19 1.20 16 21 N -0.31 -5.85 12.58 30.62 0.39 -5.46 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.17 2.22 8.04 -52.48 -0.42 1.80 16 26 H 0.06 1.21 7.07 -51.93 -0.37 0.85 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 1.25 7.16 -51.93 -0.37 0.88 16 29 H 0.32 5.50 7.85 -39.29 -0.31 5.19 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.08 2.06 6.77 -51.93 -0.35 1.71 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.19 3.79 7.38 -52.49 -0.39 3.40 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -29.53 281.49 -6.31 -35.84 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.87 Total: 6.36 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.78 Total: -13.02 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.12 Total: -49.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.53 -6.31 -35.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.600 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds