Wall clock time and date at job start Mon Mar 30 2020 03:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03670 * 2 1 4 4 C 1.35322 * 107.74515 * 180.15129 * 3 2 1 5 5 C 1.50700 * 126.03708 * 179.87770 * 4 3 2 6 6 C 1.53002 * 109.90615 * 270.81479 * 5 4 3 7 7 N 1.47899 * 110.08511 * 32.02505 * 5 4 3 8 8 C 1.48538 * 105.82096 * 144.77264 * 7 5 4 9 9 C 1.54933 * 103.22579 * 320.79703 * 8 7 5 10 10 C 1.53997 * 109.91566 * 149.71565 * 5 4 3 11 11 H 1.09004 * 110.30998 * 358.13713 * 10 5 4 12 12 C 1.50704 * 110.31176 * 120.30430 * 10 5 4 13 13 H 1.08003 * 119.99579 * 359.97438 * 12 10 5 14 14 C 1.37874 * 120.00224 * 179.97438 * 12 10 5 15 15 N 1.31511 * 119.99805 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00102 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47154 * 60.00276 * 16 14 12 18 18 H 1.48497 * 109.47238 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47286 * 299.99999 * 16 14 12 20 20 C 1.39864 * 107.91886 * 359.61360 * 4 3 2 21 21 N 1.30834 * 108.20525 * 0.24043 * 20 4 3 22 22 H 1.09000 * 109.46724 * 270.30236 * 1 2 3 23 23 H 1.08996 * 109.47219 * 30.30615 * 1 2 3 24 24 H 1.08997 * 109.46939 * 150.30641 * 1 2 3 25 25 H 1.08003 * 126.12955 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47241 * 298.89917 * 6 5 4 27 27 H 1.08994 * 109.47166 * 58.90071 * 6 5 4 28 28 H 1.09001 * 109.47076 * 178.90321 * 6 5 4 29 29 H 1.00900 * 111.00061 * 24.26348 * 7 5 4 30 30 H 1.09007 * 110.66246 * 79.22764 * 8 7 5 31 31 H 1.08993 * 110.66671 * 202.18915 * 8 7 5 32 32 H 1.09007 * 110.72333 * 279.05054 * 9 8 7 33 33 H 1.09004 * 110.72411 * 155.77248 * 9 8 7 34 34 H 0.96998 * 120.00121 * 180.02562 * 15 14 12 35 35 H 1.07999 * 125.90176 * 180.22197 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7680 1.5453 -0.0073 6 6 5.1752 1.8650 -1.4470 7 7 4.4959 2.7985 0.7295 8 6 5.7666 3.1500 1.4138 9 6 6.3066 1.7767 1.8858 10 6 5.9252 0.8358 0.7200 11 1 5.5953 -0.1291 1.1050 12 6 7.0963 0.6558 -0.2114 13 1 7.0352 1.0090 -1.2302 14 6 8.2455 0.0401 0.2371 15 7 8.3197 -0.3904 1.4775 16 14 9.6972 -0.1824 -0.9171 17 1 10.1629 1.1466 -1.3888 18 1 10.8015 -0.8663 -0.1975 19 1 9.2818 -1.0036 -2.0825 20 6 3.5347 -0.7321 0.0034 21 7 2.2892 -1.1328 0.0054 22 1 -0.3633 0.0054 1.0277 23 1 -0.3633 0.8872 -0.5186 24 1 -0.3633 -0.8927 -0.5091 25 1 1.9281 2.1193 0.0004 26 1 5.4152 0.9397 -1.9707 27 1 4.3515 2.3666 -1.9547 28 1 6.0492 2.5164 -1.4413 29 1 3.7494 2.6711 1.3963 30 1 6.4620 3.6179 0.7169 31 1 5.5772 3.8048 2.2642 32 1 5.8164 1.4659 2.8085 33 1 7.3884 1.8114 2.0154 34 1 9.1283 -0.8232 1.7932 35 1 4.4054 -1.3711 0.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:01 Heat of formation + Delta-G solvation = 68.537597 kcal Electronic energy + Delta-G solvation = -17190.775358 eV Core-core repulsion = 14610.867732 eV Total energy + Delta-G solvation = -2579.907626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20235 -39.62338 -34.66229 -34.15525 -32.50352 -31.00236 -29.77985 -27.61984 -26.77923 -25.59979 -22.39110 -22.22307 -21.03768 -19.83231 -18.13962 -17.79901 -16.80762 -16.28795 -16.21331 -15.29699 -15.15844 -14.64508 -14.31865 -13.92381 -13.68211 -13.61818 -13.46131 -13.26553 -13.01823 -12.83080 -12.47117 -12.31501 -11.79987 -11.70527 -11.64999 -11.43961 -10.99498 -10.56991 -10.35970 -10.21951 -9.29789 -9.17218 -8.02916 -6.09640 1.01963 1.44802 1.45088 1.51739 1.80778 1.92147 2.49327 3.28772 3.52261 3.74876 4.15058 4.30469 4.41202 4.47641 4.51170 4.63976 4.73862 4.76465 4.85392 4.95344 5.00874 5.08829 5.12163 5.24966 5.36597 5.55696 5.64261 5.71542 5.74820 5.92511 5.97068 6.14502 6.29025 6.52932 6.74548 6.83966 7.01304 7.57586 9.05645 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.008132 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.071165 B = 3442.509825 C = 3799.938585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.379 5.379 3 C 0.070 3.930 4 C -0.238 4.238 5 C 0.180 3.820 6 C -0.091 4.091 7 N -0.655 5.655 8 C 0.055 3.945 9 C -0.131 4.131 10 C 0.034 3.966 11 H 0.000 1.000 12 C -0.517 4.517 13 H 0.076 0.924 14 C 0.010 3.990 15 N -0.923 5.923 16 Si 0.942 3.058 17 H -0.270 1.270 18 H -0.292 1.292 19 H -0.274 1.274 20 C 0.047 3.953 21 N -0.334 5.334 22 H 0.085 0.915 23 H 0.117 0.883 24 H 0.088 0.912 25 H 0.208 0.792 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.333 0.667 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.021 0.979 33 H 0.046 0.954 34 H 0.255 0.745 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 5.721 -2.357 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.162 5.162 3 C -0.077 4.077 4 C -0.250 4.250 5 C 0.088 3.912 6 C -0.149 4.149 7 N -0.282 5.282 8 C -0.074 4.074 9 C -0.171 4.171 10 C 0.014 3.986 11 H 0.018 0.982 12 C -0.555 4.555 13 H 0.094 0.906 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.769 3.231 17 H -0.195 1.195 18 H -0.218 1.218 19 H -0.199 1.199 20 C -0.138 4.138 21 N -0.157 5.157 22 H 0.104 0.896 23 H 0.136 0.864 24 H 0.107 0.893 25 H 0.224 0.776 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.559 5.100 -2.819 15.682 hybrid contribution 2.010 -0.750 0.566 2.219 sum -12.549 4.351 -2.253 13.472 Atomic orbital electron populations 1.22196 0.71796 1.05958 1.04557 1.48813 1.07865 1.03130 1.56405 1.22619 0.89731 0.94336 1.00988 1.20341 0.95086 0.93466 1.16078 1.19848 0.89965 0.86463 0.94900 1.21489 0.99399 0.99642 0.94391 1.62941 1.06639 1.30661 1.28008 1.22941 0.91554 0.95727 0.97222 1.22851 1.00234 0.96956 0.97059 1.19820 0.92749 0.93352 0.92661 0.98191 1.21917 0.98658 1.36420 0.98533 0.90624 1.25706 1.01059 0.95880 0.96096 1.70122 1.28257 1.41125 1.16890 0.85858 0.79563 0.78376 0.79349 1.19542 1.21832 1.19901 1.23720 0.94620 0.95820 0.99620 1.77224 1.01804 1.09895 1.26739 0.89637 0.86418 0.89280 0.77575 0.94014 0.93311 0.93533 0.85137 0.91613 0.90066 0.95975 0.93536 0.93649 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 11.47 127.77 1.47 2.95 16 2 N -0.38 -10.65 4.01 -369.56 -1.48 -12.13 16 3 C 0.07 2.00 10.48 83.54 0.88 2.88 16 4 C -0.24 -8.77 4.72 -20.14 -0.10 -8.86 16 5 C 0.18 7.16 1.09 2.93 0.00 7.16 16 6 C -0.09 -3.59 7.29 71.98 0.52 -3.07 16 7 N -0.66 -22.57 6.85 -462.77 -3.17 -25.74 16 8 C 0.06 2.06 7.54 86.65 0.65 2.71 16 9 C -0.13 -6.16 6.16 31.80 0.20 -5.96 16 10 C 0.03 1.67 2.33 -10.66 -0.02 1.65 16 11 H 0.00 0.00 6.22 -2.39 -0.01 -0.02 16 12 C -0.52 -27.57 7.62 25.60 0.20 -27.38 16 13 H 0.08 3.91 4.70 -2.91 -0.01 3.89 16 14 C 0.01 0.57 5.09 84.65 0.43 1.00 16 15 N -0.92 -54.25 12.15 21.45 0.26 -53.99 16 16 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.05 1.91 10.77 85.24 0.92 2.83 16 21 N -0.33 -12.31 12.58 -57.03 -0.72 -13.03 16 22 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.21 4.25 8.04 -2.91 -0.02 4.23 16 26 H 0.04 1.74 7.07 -2.39 -0.02 1.72 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.91 7.16 -2.39 -0.02 1.89 16 29 H 0.33 10.27 7.85 -89.69 -0.70 9.57 16 30 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 2.47 6.77 -2.38 -0.02 2.45 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.16 7.14 7.38 -2.91 -0.02 7.12 16 Total: -1.00 -65.92 281.49 2.45 -63.47 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.39 Total: 19.50 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.14 Total: -24.10 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.11 Total: -104.89 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.92 2.45 -63.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.012 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds