Wall clock time and date at job start Mon Mar 30 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34946 * 126.12955 * 2 1 4 4 H 0.96995 * 126.03587 * 359.70250 * 3 2 1 5 5 N 1.40082 * 107.92491 * 179.73655 * 3 2 1 6 6 C 1.30831 * 108.21045 * 359.97438 * 5 3 2 7 7 C 1.35314 * 126.12339 * 179.68358 * 2 1 3 8 8 C 1.50701 * 126.04365 * 0.26693 * 7 2 1 9 9 C 1.52995 * 109.47668 * 182.11275 * 8 7 2 10 10 C 1.50703 * 109.46907 * 302.10932 * 8 7 2 11 11 H 1.08007 * 119.99739 * 121.24216 * 10 8 7 12 12 C 1.37875 * 120.00096 * 301.24495 * 10 8 7 13 13 N 1.31514 * 120.00173 * 4.47686 * 12 10 8 14 14 Si 1.86806 * 120.00071 * 184.47277 * 12 10 8 15 15 H 1.48505 * 109.46635 * 59.99908 * 14 12 10 16 16 H 1.48500 * 109.47113 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47116 * 300.00496 * 14 12 10 18 18 N 1.46900 * 109.47284 * 62.10656 * 8 7 2 19 19 C 1.46907 * 110.99470 * 60.00483 * 18 8 7 20 20 C 1.52996 * 117.49702 * 223.62197 * 19 18 8 21 21 C 1.53001 * 60.00124 * 252.51169 * 20 19 18 22 22 H 1.08992 * 109.46936 * 85.42020 * 1 2 3 23 23 H 1.08991 * 109.47141 * 205.41954 * 1 2 3 24 24 H 1.09000 * 109.46695 * 325.42083 * 1 2 3 25 25 H 1.08000 * 125.90723 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47271 * 56.36607 * 9 8 7 27 27 H 1.08998 * 109.47861 * 176.37127 * 9 8 7 28 28 H 1.09009 * 109.46988 * 296.37622 * 9 8 7 29 29 H 0.96999 * 119.99925 * 185.00152 * 13 12 10 30 30 H 1.00899 * 110.99845 * 183.95380 * 18 8 7 31 31 H 1.08997 * 115.54836 * 9.32711 * 19 18 8 32 32 H 1.09010 * 117.49839 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.50306 * 145.02028 * 20 19 18 34 34 H 1.08993 * 117.49779 * 252.51424 * 21 20 19 35 35 H 1.09003 * 117.51847 * 107.48195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3027 1.0899 0.0000 4 1 2.0056 2.0133 -0.0041 5 7 3.6334 0.6523 0.0061 6 6 3.6335 -0.6560 0.0102 7 6 2.3048 -1.0930 0.0060 8 6 1.8433 -2.5276 0.0083 9 6 3.0590 -3.4544 0.0686 10 6 0.9660 -2.7711 1.2092 11 1 -0.0494 -3.1143 1.0755 12 6 1.4594 -2.5559 2.4785 13 7 2.6647 -2.0547 2.6392 14 14 0.4161 -2.9760 3.9700 15 1 0.0890 -4.4245 3.9530 16 1 1.1700 -2.6537 5.2081 17 1 -0.8399 -2.1846 3.9343 18 7 1.0811 -2.7987 -1.2179 19 6 1.9064 -2.5714 -2.4118 20 6 1.2655 -1.8215 -3.5813 21 6 1.5261 -3.3254 -3.6876 22 1 -0.3633 0.0821 -1.0243 23 1 -0.3633 -0.9281 0.4411 24 1 -0.3633 0.8461 0.5833 25 1 4.5083 -1.2893 0.0157 26 1 3.6593 -3.2097 0.9449 27 1 2.7240 -4.4895 0.1352 28 1 3.6601 -3.3243 -0.8314 29 1 3.0402 -1.9708 3.5296 30 1 0.7059 -3.7354 -1.2107 31 1 2.9667 -2.4011 -2.2248 32 1 0.2315 -1.4965 -3.4647 33 1 1.9041 -1.1576 -4.1640 34 1 2.3361 -3.6509 -4.3401 35 1 0.6637 -3.9905 -3.6410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260221483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:35 Heat of formation + Delta-G solvation = 104.528388 kcal Electronic energy + Delta-G solvation = -17625.879195 eV Core-core repulsion = 15047.532247 eV Total energy + Delta-G solvation = -2578.346948 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07601 -37.30439 -34.68236 -31.64526 -31.34794 -29.27845 -27.30848 -25.60102 -25.28647 -21.88224 -21.28646 -20.32293 -20.20159 -17.89429 -16.36861 -15.84274 -15.24133 -14.63237 -14.15836 -13.60465 -13.20415 -12.90478 -12.52660 -12.42954 -11.84119 -11.72957 -11.44204 -11.14958 -11.03381 -10.91322 -10.87076 -10.59116 -10.25264 -10.10833 -9.88025 -9.80707 -9.45825 -8.84478 -8.46073 -8.23001 -7.17002 -6.92133 -5.91727 -4.02756 3.13529 3.31626 3.37759 3.39528 4.02226 4.21144 4.41444 4.48514 5.13278 5.33637 5.51812 5.60101 6.00982 6.03940 6.05942 6.08115 6.17596 6.30463 6.50085 6.52360 6.65306 6.68556 6.80241 6.89755 7.01595 7.20716 7.22446 7.59722 7.76849 7.85762 7.87016 8.23375 8.47858 8.52704 8.65468 8.93864 9.02469 9.61633 11.07968 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.011779 C = 0.009791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.163785 B = 2376.457537 C = 2859.081791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.084 3.916 3 N -0.500 5.500 4 H 0.419 0.581 5 N -0.334 5.334 6 C 0.069 3.931 7 C -0.125 4.125 8 C 0.306 3.694 9 C -0.163 4.163 10 C -0.505 4.505 11 H 0.061 0.939 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.886 3.114 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.278 1.278 18 N -0.646 5.646 19 C 0.043 3.957 20 C -0.179 4.179 21 C -0.208 4.208 22 H 0.056 0.944 23 H 0.106 0.894 24 H 0.039 0.961 25 H 0.159 0.841 26 H 0.081 0.919 27 H 0.030 0.970 28 H 0.015 0.985 29 H 0.258 0.742 30 H 0.332 0.668 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 0.581 -6.985 7.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 N -0.210 5.210 4 H 0.260 0.740 5 N -0.157 5.157 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.216 3.784 9 C -0.223 4.223 10 C -0.543 4.543 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.504 5.504 14 Si 0.714 3.286 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.204 1.204 18 N -0.276 5.276 19 C -0.068 4.068 20 C -0.217 4.217 21 C -0.247 4.247 22 H 0.075 0.925 23 H 0.124 0.876 24 H 0.058 0.942 25 H 0.176 0.824 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.632 2.311 -6.816 7.379 hybrid contribution -0.437 -1.170 1.076 1.648 sum -2.068 1.141 -5.739 6.206 Atomic orbital electron populations 1.20322 0.88578 1.03771 1.00695 1.20498 0.93811 0.87034 1.02835 1.45973 1.04461 1.07220 1.63315 0.74031 1.77007 0.96947 1.13642 1.28100 1.23389 0.98168 0.91302 0.98821 1.19640 0.90163 0.95639 1.08206 1.16862 0.89206 0.86582 0.85796 1.22446 1.00701 0.98854 1.00281 1.20813 0.98731 1.45464 0.89323 0.92092 1.24818 0.95285 0.94465 0.98490 1.69967 1.15566 1.42584 1.22234 0.86776 0.80499 0.78768 0.82583 1.20442 1.21644 1.20400 1.60525 1.35570 1.30836 1.00656 1.22308 0.96429 1.01711 0.86356 1.22987 1.02028 0.93207 1.03524 1.23180 1.03107 0.95292 1.03102 0.92512 0.87583 0.94219 0.82377 0.89997 0.95075 0.96656 0.93208 0.84899 0.88826 0.89085 0.90272 0.89981 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.16 36.01 0.37 -1.06 16 2 C 0.08 1.81 7.10 -82.26 -0.58 1.23 16 3 N -0.50 -10.19 7.36 33.48 0.25 -9.94 16 4 H 0.42 7.01 8.96 -182.62 -1.64 5.37 16 5 N -0.33 -7.50 12.70 30.63 0.39 -7.11 16 6 C 0.07 1.58 10.68 -17.36 -0.19 1.39 16 7 C -0.13 -2.83 2.47 -105.05 -0.26 -3.09 16 8 C 0.31 6.79 0.37 -133.91 -0.05 6.74 16 9 C -0.16 -3.60 7.08 37.15 0.26 -3.34 16 10 C -0.50 -12.40 6.13 -34.44 -0.21 -12.61 16 11 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 12 C 0.07 1.87 5.14 -17.82 -0.09 1.78 16 13 N -0.87 -23.05 10.30 55.43 0.57 -22.48 16 14 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 N -0.65 -12.59 6.25 -95.38 -0.60 -13.19 16 19 C 0.04 0.77 4.92 -67.71 -0.33 0.43 16 20 C -0.18 -2.83 10.46 -26.73 -0.28 -3.11 16 21 C -0.21 -3.07 10.33 -26.73 -0.28 -3.35 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.11 2.24 6.01 -51.93 -0.31 1.93 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.16 3.47 7.40 -52.49 -0.39 3.08 16 26 H 0.08 2.00 6.13 -51.93 -0.32 1.68 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.01 0.30 6.15 -51.92 -0.32 -0.02 16 29 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 30 H 0.33 6.28 8.67 -39.29 -0.34 5.94 16 31 H 0.09 1.80 6.03 -51.93 -0.31 1.49 16 32 H 0.09 1.46 8.14 -51.92 -0.42 1.03 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -27.17 284.81 -7.90 -35.06 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.13 Total: 13.00 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.64 Total: -14.98 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.61 Total: -52.72 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.17 -7.90 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260221483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.592 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds