Wall clock time and date at job start Mon Mar 30 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34946 * 126.12955 * 2 1 4 4 H 0.96995 * 126.03587 * 359.70250 * 3 2 1 5 5 N 1.40082 * 107.92491 * 179.73655 * 3 2 1 6 6 C 1.30831 * 108.21045 * 359.97438 * 5 3 2 7 7 C 1.35314 * 126.12339 * 179.68358 * 2 1 3 8 8 C 1.50701 * 126.04365 * 0.26693 * 7 2 1 9 9 C 1.52995 * 109.47668 * 182.11275 * 8 7 2 10 10 C 1.50703 * 109.46907 * 302.10932 * 8 7 2 11 11 H 1.08007 * 119.99739 * 121.24216 * 10 8 7 12 12 C 1.37875 * 120.00096 * 301.24495 * 10 8 7 13 13 N 1.31514 * 120.00173 * 4.47686 * 12 10 8 14 14 Si 1.86806 * 120.00071 * 184.47277 * 12 10 8 15 15 H 1.48505 * 109.46635 * 59.99908 * 14 12 10 16 16 H 1.48500 * 109.47113 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47116 * 300.00496 * 14 12 10 18 18 N 1.46900 * 109.47284 * 62.10656 * 8 7 2 19 19 C 1.46907 * 110.99470 * 60.00483 * 18 8 7 20 20 C 1.52996 * 117.49702 * 223.62197 * 19 18 8 21 21 C 1.53001 * 60.00124 * 252.51169 * 20 19 18 22 22 H 1.08992 * 109.46936 * 85.42020 * 1 2 3 23 23 H 1.08991 * 109.47141 * 205.41954 * 1 2 3 24 24 H 1.09000 * 109.46695 * 325.42083 * 1 2 3 25 25 H 1.08000 * 125.90723 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47271 * 56.36607 * 9 8 7 27 27 H 1.08998 * 109.47861 * 176.37127 * 9 8 7 28 28 H 1.09009 * 109.46988 * 296.37622 * 9 8 7 29 29 H 0.96999 * 119.99925 * 185.00152 * 13 12 10 30 30 H 1.00899 * 110.99845 * 183.95380 * 18 8 7 31 31 H 1.08997 * 115.54836 * 9.32711 * 19 18 8 32 32 H 1.09010 * 117.49839 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.50306 * 145.02028 * 20 19 18 34 34 H 1.08993 * 117.49779 * 252.51424 * 21 20 19 35 35 H 1.09003 * 117.51847 * 107.48195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3027 1.0899 0.0000 4 1 2.0056 2.0133 -0.0041 5 7 3.6334 0.6523 0.0061 6 6 3.6335 -0.6560 0.0102 7 6 2.3048 -1.0930 0.0060 8 6 1.8433 -2.5276 0.0083 9 6 3.0590 -3.4544 0.0686 10 6 0.9660 -2.7711 1.2092 11 1 -0.0494 -3.1143 1.0755 12 6 1.4594 -2.5559 2.4785 13 7 2.6647 -2.0547 2.6392 14 14 0.4161 -2.9760 3.9700 15 1 0.0890 -4.4245 3.9530 16 1 1.1700 -2.6537 5.2081 17 1 -0.8399 -2.1846 3.9343 18 7 1.0811 -2.7987 -1.2179 19 6 1.9064 -2.5714 -2.4118 20 6 1.2655 -1.8215 -3.5813 21 6 1.5261 -3.3254 -3.6876 22 1 -0.3633 0.0821 -1.0243 23 1 -0.3633 -0.9281 0.4411 24 1 -0.3633 0.8461 0.5833 25 1 4.5083 -1.2893 0.0157 26 1 3.6593 -3.2097 0.9449 27 1 2.7240 -4.4895 0.1352 28 1 3.6601 -3.3243 -0.8314 29 1 3.0402 -1.9708 3.5296 30 1 0.7059 -3.7354 -1.2107 31 1 2.9667 -2.4011 -2.2248 32 1 0.2315 -1.4965 -3.4647 33 1 1.9041 -1.1576 -4.1640 34 1 2.3361 -3.6509 -4.3401 35 1 0.6637 -3.9905 -3.6410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260221483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:35 Heat of formation + Delta-G solvation = 87.131338 kcal Electronic energy + Delta-G solvation = -17626.633588 eV Core-core repulsion = 15047.532247 eV Total energy + Delta-G solvation = -2579.101341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.75992 -38.76281 -36.28592 -33.46854 -32.99935 -30.90588 -28.96969 -27.33474 -27.08762 -23.15985 -22.89372 -22.02670 -21.71143 -19.58100 -18.14360 -17.43118 -16.91935 -16.23593 -15.78561 -15.20771 -14.91161 -14.47943 -14.19555 -14.02601 -13.49636 -13.25937 -13.07697 -12.83838 -12.71491 -12.59872 -12.33020 -12.20623 -11.99846 -11.93674 -11.51170 -11.27454 -10.88681 -10.61750 -10.37763 -9.92319 -8.70178 -8.63664 -7.83561 -5.99045 1.42986 1.48530 1.51438 1.55156 2.44199 2.49542 2.54228 3.20690 3.38829 3.71517 4.24156 4.31277 4.37788 4.44975 4.64496 4.68401 4.90306 4.95088 4.99677 5.04458 5.07124 5.14137 5.23720 5.36131 5.44563 5.53862 5.59505 5.79698 5.91407 6.07446 6.16214 6.43396 6.81643 6.93218 6.99877 7.17940 7.25504 7.67816 9.11683 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.011779 C = 0.009791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.163785 B = 2376.457537 C = 2859.081791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.078 3.922 3 N -0.489 5.489 4 H 0.435 0.565 5 N -0.348 5.348 6 C 0.054 3.946 7 C -0.138 4.138 8 C 0.306 3.694 9 C -0.153 4.153 10 C -0.501 4.501 11 H 0.057 0.943 12 C 0.035 3.965 13 N -0.888 5.888 14 Si 0.932 3.068 15 H -0.276 1.276 16 H -0.300 1.300 17 H -0.276 1.276 18 N -0.643 5.643 19 C 0.018 3.982 20 C -0.173 4.173 21 C -0.183 4.183 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.157 0.843 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.249 0.751 30 H 0.333 0.667 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 0.728 -8.134 8.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.049 4.049 3 N -0.200 5.200 4 H 0.279 0.721 5 N -0.172 5.172 6 C -0.131 4.131 7 C -0.150 4.150 8 C 0.215 3.785 9 C -0.212 4.212 10 C -0.540 4.540 11 H 0.075 0.925 12 C -0.167 4.167 13 N -0.526 5.526 14 Si 0.760 3.240 15 H -0.201 1.201 16 H -0.226 1.226 17 H -0.201 1.201 18 N -0.272 5.272 19 C -0.093 4.093 20 C -0.211 4.211 21 C -0.221 4.221 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.079 0.921 25 H 0.174 0.826 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.826 2.466 -7.982 8.819 hybrid contribution -0.083 -1.207 1.371 1.828 sum -2.908 1.259 -6.611 7.332 Atomic orbital electron populations 1.20285 0.86782 1.03534 1.02113 1.20896 0.95014 0.87001 1.02018 1.45963 1.03693 1.08039 1.62328 0.72106 1.76940 0.98126 1.13511 1.28633 1.23459 0.98522 0.91595 0.99539 1.19704 0.90251 0.96087 1.08940 1.16727 0.88859 0.86602 0.86293 1.22307 1.00655 0.98608 0.99656 1.21055 0.98694 1.44084 0.90185 0.92469 1.25329 0.95980 0.94935 1.00409 1.70109 1.16681 1.44058 1.21764 0.86031 0.79262 0.78589 0.80073 1.20113 1.22646 1.20117 1.60449 1.35455 1.30919 1.00369 1.22226 0.95452 1.04963 0.86691 1.23006 1.01872 0.94268 1.01962 1.23240 1.03628 0.94774 1.00467 0.90563 0.89665 0.92116 0.82584 0.92601 0.95356 0.95340 0.94131 0.84829 0.90633 0.89091 0.89510 0.88265 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.46 10.16 71.24 0.72 -1.73 16 2 C 0.08 3.24 7.10 41.41 0.29 3.54 16 3 N -0.49 -19.20 7.36 -48.00 -0.35 -19.56 16 4 H 0.44 13.70 8.96 -213.34 -1.91 11.79 16 5 N -0.35 -15.45 12.70 -57.02 -0.72 -16.18 16 6 C 0.05 2.47 10.68 85.24 0.91 3.38 16 7 C -0.14 -6.20 2.47 -20.14 -0.05 -6.25 16 8 C 0.31 13.47 0.37 2.03 0.00 13.47 16 9 C -0.15 -6.76 7.08 71.98 0.51 -6.25 16 10 C -0.50 -24.39 6.13 25.60 0.16 -24.24 16 11 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 12 C 0.03 1.76 5.14 84.65 0.44 2.19 16 13 N -0.89 -47.69 10.30 21.45 0.22 -47.47 16 14 Si 0.93 41.67 29.54 68.60 2.03 43.70 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 N -0.64 -24.24 6.25 -455.67 -2.85 -27.09 16 19 C 0.02 0.60 4.92 44.91 0.22 0.82 16 20 C -0.17 -5.02 10.46 30.59 0.32 -4.70 16 21 C -0.18 -4.85 10.33 30.60 0.32 -4.54 16 22 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.08 3.46 6.01 -2.39 -0.01 3.45 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.16 7.00 7.40 -2.91 -0.02 6.98 16 26 H 0.06 2.77 6.13 -2.39 -0.01 2.75 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.03 1.14 6.15 -2.38 -0.01 1.13 16 29 H 0.25 13.41 8.32 -92.71 -0.77 12.64 16 30 H 0.33 12.15 8.67 -89.69 -0.78 11.37 16 31 H 0.08 2.85 6.03 -2.39 -0.01 2.83 16 32 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -56.42 284.81 0.58 -55.84 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -1.58 Total: 35.06 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.84 Total: -24.31 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -3.71 Total: -110.29 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -56.42 0.58 -55.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260221483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.970 kcal (2) G-P(sol) polarization free energy of solvation -56.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds