Wall clock time and date at job start Mon Mar 30 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38120 * 120.39544 * 2 1 4 4 C 1.39624 * 118.32964 * 180.02562 * 3 2 1 5 5 N 1.38540 * 120.53447 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00196 * 188.96373 * 5 4 3 7 7 C 1.46507 * 119.99580 * 8.95668 * 5 4 3 8 8 C 1.52997 * 109.46618 * 179.17178 * 7 5 4 9 9 C 1.53002 * 109.46855 * 59.17425 * 7 5 4 10 10 C 1.50693 * 109.47318 * 299.17489 * 7 5 4 11 11 H 1.08007 * 119.99907 * 0.16513 * 10 7 5 12 12 C 1.37881 * 120.00177 * 180.44601 * 10 7 5 13 13 N 1.31514 * 119.99539 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00048 * 179.97438 * 12 10 7 15 15 H 1.48493 * 109.46885 * 90.00124 * 14 12 10 16 16 H 1.48504 * 109.46926 * 209.99737 * 14 12 10 17 17 H 1.48500 * 109.47238 * 329.99753 * 14 12 10 18 18 N 1.32996 * 118.93634 * 0.25241 * 4 3 2 19 19 C 1.31753 * 120.68768 * 359.49000 * 18 4 3 20 20 N 1.31783 * 121.82762 * 0.52174 * 19 18 4 21 21 H 1.09001 * 109.46948 * 90.00299 * 1 2 3 22 22 H 1.09003 * 109.47166 * 209.99541 * 1 2 3 23 23 H 1.08994 * 109.47435 * 330.00540 * 1 2 3 24 24 H 1.07994 * 120.83496 * 0.04224 * 3 2 1 25 25 H 1.09003 * 109.47022 * 264.62042 * 6 5 4 26 26 H 1.09002 * 109.47607 * 24.61889 * 6 5 4 27 27 H 1.09008 * 109.47149 * 144.62220 * 6 5 4 28 28 H 1.09007 * 109.47017 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47657 * 300.00327 * 8 7 5 30 30 H 1.09001 * 109.47049 * 60.00740 * 8 7 5 31 31 H 1.08993 * 109.47088 * 303.42770 * 9 7 5 32 32 H 1.09006 * 109.47204 * 63.42486 * 9 7 5 33 33 H 1.08997 * 109.46963 * 183.42159 * 9 7 5 34 34 H 0.96994 * 119.99818 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.08539 * 180.26418 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1914 0.0000 4 6 3.6012 1.1410 -0.0005 5 7 4.3476 2.3082 -0.0011 6 6 5.7979 2.2500 -0.1993 7 6 3.6864 3.6005 0.1964 8 6 4.7321 4.7171 0.1728 9 6 2.9668 3.6041 1.5466 10 6 2.6852 3.8264 -0.9070 11 1 2.5526 3.0806 -1.6768 12 6 1.9427 4.9878 -0.9370 13 7 2.1079 5.8982 -0.0024 14 14 0.7021 5.2681 -2.3051 15 1 -0.6186 4.7281 -1.8939 16 1 0.5803 6.7239 -2.5722 17 1 1.1585 4.5753 -3.5368 18 7 4.2023 -0.0453 -0.0062 19 6 3.4956 -1.1573 -0.0011 20 7 2.1778 -1.1432 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.6861 2.1380 0.0007 25 1 6.2972 2.2459 0.7696 26 1 6.0542 1.3413 -0.7439 27 1 6.1217 3.1198 -0.7712 28 1 4.2403 5.6787 0.3202 29 1 5.4563 4.5537 0.9709 30 1 5.2447 4.7146 -0.7891 31 1 2.2650 2.7711 1.5865 32 1 3.6982 3.5016 2.3484 33 1 2.4248 4.5421 1.6670 34 1 1.5853 6.7150 -0.0232 35 1 4.0105 -2.1066 -0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:02 Heat of formation + Delta-G solvation = 58.001113 kcal Electronic energy + Delta-G solvation = -17393.756938 eV Core-core repulsion = 14813.392416 eV Total energy + Delta-G solvation = -2580.364522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20913 -37.39104 -34.01210 -32.75674 -31.20287 -29.91205 -28.23794 -26.13318 -25.47141 -24.65102 -23.26718 -21.33175 -19.04568 -17.06490 -16.68089 -15.67941 -15.00102 -14.51173 -14.28207 -14.00857 -13.64725 -13.60738 -12.68050 -12.38831 -12.21503 -11.90853 -11.66315 -11.57498 -11.40238 -11.13316 -10.95273 -10.74605 -10.57374 -10.34599 -10.10864 -9.88097 -9.65347 -9.18886 -8.77860 -8.55887 -8.41608 -6.87644 -6.20100 -4.31385 1.87936 2.19517 3.17710 3.25844 3.29912 3.81982 4.26908 4.67004 4.81761 5.02742 5.08084 5.50782 5.83516 5.92354 5.97364 6.08530 6.13173 6.28325 6.34181 6.41862 6.47487 6.62183 6.63959 6.70884 6.81181 7.00450 7.13557 7.25341 7.41534 7.58819 7.71679 7.88382 8.07763 8.30668 8.39450 8.73499 9.07216 9.35580 10.78927 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.011240 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.918693 B = 2490.416316 C = 3304.418344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.166 3.834 3 C -0.266 4.266 4 C 0.445 3.555 5 N -0.575 5.575 6 C 0.096 3.904 7 C 0.292 3.708 8 C -0.139 4.139 9 C -0.155 4.155 10 C -0.521 4.521 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.883 5.883 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.600 5.600 19 C 0.318 3.682 20 N -0.583 5.583 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.174 0.826 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.097 0.903 34 H 0.265 0.735 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -5.219 0.677 5.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.027 3.973 3 C -0.294 4.294 4 C 0.201 3.799 5 N -0.284 5.284 6 C -0.048 4.048 7 C 0.210 3.790 8 C -0.197 4.197 9 C -0.214 4.214 10 C -0.560 4.560 11 H 0.081 0.919 12 C -0.133 4.133 13 N -0.521 5.521 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.327 5.327 19 C 0.027 3.973 20 N -0.305 5.305 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.191 0.809 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.244 -5.607 0.725 5.789 hybrid contribution -0.869 0.946 -0.741 1.482 sum 0.375 -4.662 -0.016 4.677 Atomic orbital electron populations 1.20631 0.89218 1.02927 1.02745 1.21261 0.96646 0.88206 0.91191 1.22898 0.94336 1.01862 1.10264 1.18522 0.88731 0.86130 0.86482 1.47233 1.05766 1.04081 1.71337 1.21510 0.81214 1.02011 1.00016 1.18339 0.90302 0.76502 0.93849 1.22064 0.97170 1.02733 0.97782 1.22317 0.99624 1.03700 0.95718 1.21374 1.20790 1.03891 1.09903 0.91872 1.24842 0.97001 0.95465 0.96019 1.69769 1.40666 1.08664 1.33016 0.86511 0.81477 0.77457 0.82229 1.20289 1.21049 1.19873 1.67896 1.41803 0.98102 1.24918 1.24243 0.86860 0.95442 0.90776 1.68068 1.09936 1.30344 1.22146 0.90711 0.91009 0.90618 0.80863 0.94396 0.91636 0.91560 0.88190 0.96316 0.94467 0.94131 0.96777 0.88472 0.92487 0.80360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.21 36.01 0.37 -1.13 16 2 C 0.17 3.20 6.82 -82.33 -0.56 2.64 16 3 C -0.27 -5.69 6.65 -39.11 -0.26 -5.95 16 4 C 0.45 9.73 6.85 -154.77 -1.06 8.67 16 5 N -0.57 -12.47 2.90 -167.84 -0.49 -12.95 16 6 C 0.10 1.79 9.50 59.85 0.57 2.35 16 7 C 0.29 6.69 0.77 -132.97 -0.10 6.59 16 8 C -0.14 -3.06 7.09 37.16 0.26 -2.80 16 9 C -0.16 -3.53 8.14 37.16 0.30 -3.23 16 10 C -0.52 -12.89 5.67 -34.44 -0.20 -13.09 16 11 H 0.06 1.65 7.03 -52.48 -0.37 1.28 16 12 C 0.07 1.71 5.14 -17.82 -0.09 1.62 16 13 N -0.88 -22.08 9.33 55.43 0.52 -21.56 16 14 Si 0.90 19.75 29.54 -169.99 -5.02 14.72 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 N -0.60 -12.23 9.28 -13.81 -0.13 -12.36 16 19 C 0.32 5.82 12.28 -92.20 -1.13 4.68 16 20 N -0.58 -11.14 10.37 -10.88 -0.11 -11.25 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 24 H 0.17 3.95 4.37 -52.49 -0.23 3.72 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.18 7.38 -51.93 -0.38 0.80 16 27 H 0.07 1.17 6.02 -51.92 -0.31 0.86 16 28 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 29 H 0.02 0.36 7.80 -51.93 -0.40 -0.04 16 30 H 0.04 0.79 6.84 -51.93 -0.36 0.43 16 31 H 0.04 0.91 5.27 -51.93 -0.27 0.64 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 2.36 6.02 -51.93 -0.31 2.04 16 34 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 35 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -26.59 275.66 -7.60 -34.19 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.62 Total: 4.68 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.90 Total: 0.37 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.21 Total: -58.12 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.59 -7.60 -34.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.194 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds