Wall clock time and date at job start Mon Mar 30 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38120 * 120.39544 * 2 1 4 4 C 1.39624 * 118.32964 * 180.02562 * 3 2 1 5 5 N 1.38540 * 120.53447 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00196 * 188.96373 * 5 4 3 7 7 C 1.46507 * 119.99580 * 8.95668 * 5 4 3 8 8 C 1.52997 * 109.46618 * 179.17178 * 7 5 4 9 9 C 1.53002 * 109.46855 * 59.17425 * 7 5 4 10 10 C 1.50693 * 109.47318 * 299.17489 * 7 5 4 11 11 H 1.08007 * 119.99907 * 0.16513 * 10 7 5 12 12 C 1.37881 * 120.00177 * 180.44601 * 10 7 5 13 13 N 1.31514 * 119.99539 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00048 * 179.97438 * 12 10 7 15 15 H 1.48493 * 109.46885 * 90.00124 * 14 12 10 16 16 H 1.48504 * 109.46926 * 209.99737 * 14 12 10 17 17 H 1.48500 * 109.47238 * 329.99753 * 14 12 10 18 18 N 1.32996 * 118.93634 * 0.25241 * 4 3 2 19 19 C 1.31753 * 120.68768 * 359.49000 * 18 4 3 20 20 N 1.31783 * 121.82762 * 0.52174 * 19 18 4 21 21 H 1.09001 * 109.46948 * 90.00299 * 1 2 3 22 22 H 1.09003 * 109.47166 * 209.99541 * 1 2 3 23 23 H 1.08994 * 109.47435 * 330.00540 * 1 2 3 24 24 H 1.07994 * 120.83496 * 0.04224 * 3 2 1 25 25 H 1.09003 * 109.47022 * 264.62042 * 6 5 4 26 26 H 1.09002 * 109.47607 * 24.61889 * 6 5 4 27 27 H 1.09008 * 109.47149 * 144.62220 * 6 5 4 28 28 H 1.09007 * 109.47017 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47657 * 300.00327 * 8 7 5 30 30 H 1.09001 * 109.47049 * 60.00740 * 8 7 5 31 31 H 1.08993 * 109.47088 * 303.42770 * 9 7 5 32 32 H 1.09006 * 109.47204 * 63.42486 * 9 7 5 33 33 H 1.08997 * 109.46963 * 183.42159 * 9 7 5 34 34 H 0.96994 * 119.99818 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.08539 * 180.26418 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1914 0.0000 4 6 3.6012 1.1410 -0.0005 5 7 4.3476 2.3082 -0.0011 6 6 5.7979 2.2500 -0.1993 7 6 3.6864 3.6005 0.1964 8 6 4.7321 4.7171 0.1728 9 6 2.9668 3.6041 1.5466 10 6 2.6852 3.8264 -0.9070 11 1 2.5526 3.0806 -1.6768 12 6 1.9427 4.9878 -0.9370 13 7 2.1079 5.8982 -0.0024 14 14 0.7021 5.2681 -2.3051 15 1 -0.6186 4.7281 -1.8939 16 1 0.5803 6.7239 -2.5722 17 1 1.1585 4.5753 -3.5368 18 7 4.2023 -0.0453 -0.0062 19 6 3.4956 -1.1573 -0.0011 20 7 2.1778 -1.1432 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.6861 2.1380 0.0007 25 1 6.2972 2.2459 0.7696 26 1 6.0542 1.3413 -0.7439 27 1 6.1217 3.1198 -0.7712 28 1 4.2403 5.6787 0.3202 29 1 5.4563 4.5537 0.9709 30 1 5.2447 4.7146 -0.7891 31 1 2.2650 2.7711 1.5865 32 1 3.6982 3.5016 2.3484 33 1 2.4248 4.5421 1.6670 34 1 1.5853 6.7150 -0.0232 35 1 4.0105 -2.1066 -0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260337851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:02 Heat of formation + Delta-G solvation = 44.999688 kcal Electronic energy + Delta-G solvation = -17394.320722 eV Core-core repulsion = 14813.392416 eV Total energy + Delta-G solvation = -2580.928306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74773 -39.05605 -35.64989 -34.38315 -32.80500 -31.61497 -29.68559 -27.75590 -27.34374 -26.28482 -24.80921 -22.89225 -20.74766 -18.76844 -18.23846 -17.43037 -16.66781 -16.10305 -15.93225 -15.57054 -15.23804 -15.18195 -14.25680 -13.78333 -13.62744 -13.42774 -13.36134 -13.21235 -12.95221 -12.90191 -12.66962 -12.52134 -12.32719 -12.09831 -11.81764 -11.56355 -11.27289 -10.95309 -10.42733 -10.35582 -9.95758 -8.52928 -8.05739 -6.23516 0.36712 0.62825 1.41606 1.46066 1.52956 2.21012 2.46008 3.13476 3.15018 3.46296 3.63309 4.00552 4.46143 4.49823 4.58425 4.66152 4.70384 4.75790 4.79412 4.86818 4.92485 4.98205 5.05647 5.11837 5.16710 5.21990 5.42968 5.56112 5.68485 5.76997 5.92608 6.16414 6.27326 6.58024 6.76789 6.89208 7.42733 7.55936 8.89527 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.011240 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.918693 B = 2490.416316 C = 3304.418344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.168 3.832 3 C -0.291 4.291 4 C 0.428 3.572 5 N -0.586 5.586 6 C 0.097 3.903 7 C 0.290 3.710 8 C -0.130 4.130 9 C -0.143 4.143 10 C -0.525 4.525 11 H 0.044 0.956 12 C 0.037 3.963 13 N -0.897 5.897 14 Si 0.944 3.056 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.281 1.281 18 N -0.608 5.608 19 C 0.317 3.683 20 N -0.587 5.587 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.155 0.845 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.266 0.734 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -6.322 0.546 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.028 3.972 3 C -0.319 4.319 4 C 0.185 3.815 5 N -0.296 5.296 6 C -0.046 4.046 7 C 0.207 3.793 8 C -0.188 4.188 9 C -0.202 4.202 10 C -0.563 4.563 11 H 0.062 0.938 12 C -0.164 4.164 13 N -0.535 5.535 14 Si 0.770 3.230 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.335 5.335 19 C 0.027 3.973 20 N -0.309 5.309 21 H 0.106 0.894 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.173 0.827 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.161 -6.722 0.598 6.847 hybrid contribution -0.835 1.194 -0.693 1.614 sum 0.326 -5.528 -0.095 5.538 Atomic orbital electron populations 1.20727 0.86637 1.04081 1.03877 1.21814 0.98453 0.87594 0.89289 1.22795 0.94475 1.01912 1.12686 1.18754 0.89109 0.86707 0.86923 1.47226 1.06826 1.03675 1.71841 1.21603 0.79728 1.02464 1.00798 1.18234 0.90364 0.77547 0.93134 1.21916 0.97061 1.01347 0.98459 1.22160 0.99461 1.02531 0.96055 1.21373 1.21582 1.03461 1.09926 0.93789 1.25326 0.98182 0.95382 0.97508 1.69852 1.41116 1.08788 1.33770 0.85774 0.80070 0.77158 0.79969 1.19763 1.20810 1.20676 1.67969 1.42038 0.98060 1.25440 1.25111 0.86958 0.96327 0.88854 1.68215 1.10335 1.29921 1.22387 0.89420 0.89165 0.90150 0.82743 0.93251 0.91229 0.91025 0.90106 0.94651 0.94315 0.94509 0.96276 0.90164 0.92466 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.76 10.21 71.24 0.73 -2.03 16 2 C 0.17 6.26 6.82 42.42 0.29 6.55 16 3 C -0.29 -12.37 6.65 22.58 0.15 -12.22 16 4 C 0.43 18.46 6.85 133.16 0.91 19.37 16 5 N -0.59 -25.10 2.90 -684.92 -1.99 -27.08 16 6 C 0.10 3.48 9.50 127.77 1.21 4.69 16 7 C 0.29 13.27 0.77 2.85 0.00 13.28 16 8 C -0.13 -5.63 7.09 71.98 0.51 -5.12 16 9 C -0.14 -6.56 8.14 71.98 0.59 -5.98 16 10 C -0.52 -26.14 5.67 25.60 0.15 -26.00 16 11 H 0.04 2.33 7.03 -2.91 -0.02 2.31 16 12 C 0.04 1.83 5.14 84.66 0.44 2.27 16 13 N -0.90 -44.98 9.33 21.45 0.20 -44.78 16 14 Si 0.94 40.45 29.54 68.60 2.03 42.48 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 N -0.61 -23.84 9.28 -197.62 -1.83 -25.67 16 19 C 0.32 10.87 12.28 180.90 2.22 13.09 16 20 N -0.59 -21.15 10.37 -188.34 -1.95 -23.10 16 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 24 H 0.16 7.15 4.37 -2.91 -0.01 7.13 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 2.41 7.38 -2.39 -0.02 2.39 16 27 H 0.07 2.45 6.02 -2.38 -0.01 2.44 16 28 H 0.08 3.84 6.04 -2.38 -0.01 3.83 16 29 H 0.03 1.37 7.80 -2.39 -0.02 1.35 16 30 H 0.04 1.62 6.84 -2.39 -0.02 1.60 16 31 H 0.04 1.67 5.27 -2.39 -0.01 1.65 16 32 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 3.93 6.02 -2.39 -0.01 3.92 16 34 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 35 H 0.22 5.44 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -55.26 275.66 4.74 -50.53 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.09 Total: 19.72 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 7.19 Total: 7.90 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -5.57 Total: -120.63 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -55.26 4.74 -50.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.527 kcal (2) G-P(sol) polarization free energy of solvation -55.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds