Wall clock time and date at job start Mon Mar 30 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39873 * 125.89595 * 2 1 4 4 C 1.35318 * 107.91457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12233 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46957 * 244.97409 * 5 4 3 7 7 C 1.50703 * 109.47561 * 124.97347 * 5 4 3 8 8 H 1.07995 * 119.99873 * 119.99200 * 7 5 4 9 9 C 1.37879 * 119.99644 * 300.00466 * 7 5 4 10 10 N 1.31514 * 120.00148 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99710 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47183 * 89.99433 * 11 9 7 13 13 H 1.48505 * 109.46741 * 209.99494 * 11 9 7 14 14 H 1.48498 * 109.47001 * 329.99270 * 11 9 7 15 15 N 1.46899 * 109.47515 * 4.97110 * 5 4 3 16 16 C 1.46898 * 111.00526 * 205.00231 * 15 5 4 17 17 C 1.52998 * 117.50010 * 223.74773 * 16 15 5 18 18 C 1.52996 * 117.50093 * 155.08544 * 16 15 5 19 19 N 1.34942 * 107.75021 * 359.97438 * 4 3 2 20 20 C 1.46502 * 126.03662 * 179.97438 * 19 4 3 21 21 N 1.30830 * 125.89753 * 179.68720 * 2 1 3 22 22 H 1.09001 * 109.46953 * 90.00178 * 1 2 3 23 23 H 1.09000 * 109.47318 * 209.99776 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.00407 * 1 2 3 25 25 H 1.07994 * 126.04034 * 0.02562 * 3 2 1 26 26 H 0.96996 * 119.99713 * 180.02562 * 10 9 7 27 27 H 1.00896 * 110.99851 * 81.04572 * 15 5 4 28 28 H 1.09000 * 115.54572 * 9.41507 * 16 15 5 29 29 H 1.09003 * 117.49936 * 359.97438 * 17 16 15 30 30 H 1.09000 * 117.49976 * 145.01974 * 17 16 15 31 31 H 1.09006 * 117.49875 * 214.97954 * 18 16 15 32 32 H 1.09003 * 117.50117 * 0.02562 * 18 16 15 33 33 H 1.08999 * 109.46735 * 90.00537 * 20 19 4 34 34 H 1.09001 * 109.46805 * 210.00272 * 20 19 4 35 35 H 1.08993 * 109.47228 * 330.00694 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0013 6 1 5.3847 1.4599 -0.9296 7 6 5.7190 1.2336 1.1659 8 1 6.7298 0.8959 0.9915 9 6 5.2369 1.3303 2.4541 10 7 4.0060 1.7417 2.6665 11 14 6.3324 0.8768 3.8977 12 1 7.0770 2.0790 4.3509 13 1 5.4955 0.3636 5.0120 14 1 7.2953 -0.1728 3.4777 15 7 4.4227 3.0037 0.1214 16 6 5.4370 3.9007 -0.4483 17 6 5.7932 5.1592 0.3456 18 6 4.9709 5.2722 -0.9406 19 7 3.6088 -0.6341 0.0015 20 6 4.7900 -1.5007 0.0018 21 7 2.2742 -1.0598 0.0058 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9923 2.1598 0.0004 26 1 3.6671 1.8101 3.5728 27 1 4.2275 3.2424 1.0821 28 1 6.2380 3.4123 -1.0033 29 1 5.2745 5.3219 1.2904 30 1 6.8283 5.4990 0.3125 31 1 5.4654 5.6864 -1.8193 32 1 3.9116 5.5093 -0.8414 33 1 5.0830 -1.7150 1.0296 34 1 4.5563 -2.4335 -0.5114 35 1 5.6093 -0.9984 -0.5124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382208.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:53 Heat of formation + Delta-G solvation = 83.965398 kcal Electronic energy + Delta-G solvation = -17116.261695 eV Core-core repulsion = 14537.023069 eV Total energy + Delta-G solvation = -2579.238626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70293 -38.55903 -35.98029 -34.31951 -33.06177 -30.45950 -29.84797 -28.01231 -25.94075 -24.38972 -23.06050 -21.87234 -20.69471 -20.01007 -18.42202 -17.28599 -16.86259 -16.36680 -15.96855 -15.62368 -14.73617 -14.43531 -14.21758 -14.14601 -13.63259 -13.52732 -13.33736 -12.96206 -12.88631 -12.84703 -12.72870 -12.50289 -12.25930 -12.20121 -11.72755 -11.25620 -11.18291 -10.98804 -10.67540 -9.54002 -8.89460 -8.73509 -8.00394 -6.33810 1.33561 1.39149 1.44481 1.45294 2.07630 2.33515 2.42356 3.06862 3.23650 3.70623 4.02605 4.22479 4.31732 4.37160 4.50928 4.54815 4.61068 4.79476 4.81240 4.88597 4.89551 4.93807 5.05242 5.09409 5.18297 5.30500 5.42373 5.47991 5.64297 5.81970 6.01855 6.27693 6.51802 6.59303 6.93033 7.07966 7.28837 7.41667 8.84091 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.012058 C = 0.008577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.302991 B = 2321.492208 C = 3263.884756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.046 3.954 3 C -0.275 4.275 4 C 0.161 3.839 5 C 0.266 3.734 6 H 0.043 0.957 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.045 3.955 10 N -0.879 5.879 11 Si 0.936 3.064 12 H -0.276 1.276 13 H -0.295 1.295 14 H -0.268 1.268 15 N -0.653 5.653 16 C 0.027 3.973 17 C -0.207 4.207 18 C -0.166 4.166 19 N -0.383 5.383 20 C 0.120 3.880 21 N -0.359 5.359 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.261 0.739 27 H 0.356 0.644 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 1.328 -4.763 4.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.304 4.304 4 C 0.032 3.968 5 C 0.155 3.845 6 H 0.061 0.939 7 C -0.601 4.601 8 H 0.076 0.924 9 C -0.159 4.159 10 N -0.515 5.515 11 Si 0.763 3.237 12 H -0.202 1.202 13 H -0.221 1.221 14 H -0.193 1.193 15 N -0.286 5.286 16 C -0.085 4.085 17 C -0.246 4.246 18 C -0.204 4.204 19 N -0.165 5.165 20 C -0.021 4.021 21 N -0.183 5.183 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.144 0.856 26 H 0.070 0.930 27 H 0.179 0.821 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.001 -0.038 -5.172 5.172 hybrid contribution 1.287 0.577 1.986 2.436 sum 1.286 0.539 -3.185 3.477 Atomic orbital electron populations 1.20120 0.85106 1.03043 1.03286 1.22784 0.98063 0.91090 0.99920 1.20769 0.91640 0.98345 1.19656 1.21408 0.97832 0.83793 0.93795 1.17600 0.86929 0.85213 0.94751 0.93941 1.21663 0.99148 1.47804 0.91453 0.92402 1.25488 0.95502 0.94322 1.00622 1.69924 1.15137 1.45115 1.21357 0.85899 0.79225 0.78694 0.79891 1.20198 1.22136 1.19283 1.60311 1.39744 1.02188 1.26315 1.22338 0.96078 0.87901 1.02170 1.23284 1.00941 1.04757 0.95655 1.23145 0.99939 1.00041 0.97295 1.48185 1.04870 1.04901 1.58542 1.21657 0.84019 0.94013 1.02413 1.76920 0.87331 1.23799 1.30257 0.89464 0.91294 0.90147 0.85564 0.92953 0.82099 0.88546 0.90740 0.88058 0.87119 0.89599 0.92673 0.89187 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.83 10.45 71.24 0.74 -1.08 16 2 C 0.05 2.02 7.22 43.11 0.31 2.33 16 3 C -0.28 -13.07 9.97 21.99 0.22 -12.85 16 4 C 0.16 7.74 5.04 41.41 0.21 7.94 16 5 C 0.27 12.43 2.25 43.42 0.10 12.52 16 6 H 0.04 1.93 7.57 -2.39 -0.02 1.91 16 7 C -0.56 -27.40 7.49 25.60 0.19 -27.21 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.04 2.25 5.03 84.66 0.43 2.68 16 10 N -0.88 -46.44 10.65 21.45 0.23 -46.21 16 11 Si 0.94 41.12 29.54 68.60 2.03 43.15 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 N -0.65 -29.16 5.73 -477.19 -2.73 -31.90 16 16 C 0.03 1.01 6.14 44.91 0.28 1.29 16 17 C -0.21 -6.93 10.23 30.62 0.31 -6.62 16 18 C -0.17 -5.13 10.46 30.62 0.32 -4.81 16 19 N -0.38 -17.67 4.01 -356.04 -1.43 -19.10 16 20 C 0.12 4.54 10.38 127.77 1.33 5.87 16 21 N -0.36 -16.68 12.58 -47.38 -0.60 -17.27 16 22 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.13 6.04 7.79 -2.91 -0.02 6.02 16 26 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.36 17.52 6.18 -89.70 -0.55 16.96 16 28 H 0.10 3.54 7.60 -2.39 -0.02 3.53 16 29 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 30 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.09 3.15 7.58 -2.39 -0.02 3.13 16 Total: -1.00 -58.33 294.56 2.45 -55.88 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.52 Total: 35.39 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 4.43 Total: -19.94 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.53 Total: -114.47 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -58.33 2.45 -55.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382208.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.847 kcal (2) G-P(sol) polarization free energy of solvation -58.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds