Wall clock time and date at job start Mon Mar 30 2020 03:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39875 * 125.89658 * 2 1 4 4 C 1.35313 * 107.92089 * 180.14037 * 3 2 1 5 5 C 1.50698 * 126.13084 * 179.90300 * 4 3 2 6 6 H 1.09000 * 109.46995 * 114.68958 * 5 4 3 7 7 C 1.50700 * 109.47259 * 234.68810 * 5 4 3 8 8 H 1.08000 * 120.00091 * 0.02562 * 7 5 4 9 9 C 1.37880 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.31519 * 119.99717 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 119.99881 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47506 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47137 * 120.00669 * 11 9 7 14 14 H 1.48509 * 109.46929 * 240.00314 * 11 9 7 15 15 N 1.46898 * 109.46945 * 354.68841 * 5 4 3 16 16 C 1.46904 * 111.00018 * 300.00189 * 15 5 4 17 17 C 1.53001 * 117.51936 * 136.28321 * 16 15 5 18 18 C 1.52999 * 60.00190 * 107.47915 * 17 16 15 19 19 N 1.34951 * 107.74617 * 359.63931 * 4 3 2 20 20 C 1.46495 * 126.03929 * 180.24959 * 19 4 3 21 21 N 1.30836 * 125.90368 * 179.73573 * 2 1 3 22 22 H 1.09005 * 109.47109 * 270.23520 * 1 2 3 23 23 H 1.08999 * 109.47386 * 30.24130 * 1 2 3 24 24 H 1.09005 * 109.46759 * 150.23713 * 1 2 3 25 25 H 1.08002 * 126.04341 * 0.02562 * 3 2 1 26 26 H 0.96998 * 119.99695 * 179.97438 * 10 9 7 27 27 H 1.00897 * 111.00673 * 176.04659 * 15 5 4 28 28 H 1.09002 * 115.55029 * 350.58057 * 16 15 5 29 29 H 1.09001 * 117.49733 * 214.97346 * 17 16 15 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 33 33 H 1.09001 * 109.47478 * 90.00037 * 20 19 4 34 34 H 1.09007 * 109.47105 * 210.00070 * 20 19 4 35 35 H 1.09001 * 109.47329 * 329.99842 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5990 -0.0064 6 1 5.3833 1.4644 0.9260 7 6 5.7205 1.2280 -1.1679 8 1 5.4283 0.4324 -1.8372 9 6 6.9033 1.9051 -1.3769 10 7 7.2589 2.8744 -0.5622 11 14 8.0006 1.4457 -2.8171 12 1 7.3792 0.3318 -3.5773 13 1 8.1652 2.6217 -3.7088 14 1 9.3297 1.0189 -2.3104 15 7 4.4228 3.0032 -0.1338 16 6 3.6793 3.2225 -1.3817 17 6 2.4147 4.0807 -1.3096 18 6 3.6802 4.6368 -1.9654 19 7 3.6088 -0.6340 0.0030 20 6 4.7899 -1.5006 0.0075 21 7 2.2742 -1.0598 0.0049 22 1 -0.3633 0.0042 1.0277 23 1 -0.3634 0.8878 -0.5176 24 1 -0.3633 -0.8922 -0.5102 25 1 1.9923 2.1599 0.0004 26 1 8.0911 3.3505 -0.7090 27 1 5.2185 3.6206 -0.0738 28 1 3.6822 2.3884 -2.0834 29 1 1.5856 3.8111 -1.9640 30 1 2.1339 4.4824 -0.3361 31 1 4.2322 5.4046 -1.4232 32 1 3.6838 4.7331 -3.0511 33 1 5.0825 -1.7109 1.0362 34 1 4.5566 -2.4355 -0.5022 35 1 5.6096 -1.0003 -0.5083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:56 Heat of formation + Delta-G solvation = 99.168401 kcal Electronic energy + Delta-G solvation = -17185.005919 eV Core-core repulsion = 14606.426545 eV Total energy + Delta-G solvation = -2578.579374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39288 -36.96616 -34.24090 -32.90496 -31.45197 -29.09769 -28.43887 -26.18863 -24.63889 -22.75057 -21.65827 -20.21421 -19.22252 -18.27885 -16.68857 -15.78324 -15.04506 -14.67107 -14.50205 -14.06117 -13.20993 -12.98026 -12.93504 -12.72699 -12.31201 -12.06732 -11.80192 -11.58999 -11.47663 -11.29120 -11.01552 -10.80239 -10.77979 -10.39340 -9.92258 -9.67768 -9.40441 -9.30665 -8.81308 -8.14566 -7.46402 -7.13013 -6.24818 -4.44346 2.82049 3.11229 3.21614 3.24592 3.41422 3.71214 4.19895 4.77286 4.93800 5.31217 5.42486 5.61390 5.78392 5.84686 5.89437 5.89700 5.97087 6.00440 6.19872 6.29831 6.32527 6.46215 6.54330 6.64926 6.82934 6.87056 6.95008 7.00378 7.40115 7.55598 7.62068 7.82698 8.02670 8.35727 8.64389 8.70084 8.89751 9.28095 10.70872 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.010811 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.402733 B = 2589.386673 C = 3496.599385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.053 3.947 3 C -0.281 4.281 4 C 0.137 3.863 5 C 0.265 3.735 6 H 0.059 0.941 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.075 3.925 10 N -0.885 5.885 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.281 1.281 15 N -0.652 5.652 16 C 0.072 3.928 17 C -0.192 4.192 18 C -0.207 4.207 19 N -0.369 5.369 20 C 0.097 3.903 21 N -0.330 5.330 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.150 0.850 26 H 0.269 0.731 27 H 0.366 0.634 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -1.246 -0.257 5.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.310 4.310 4 C 0.009 3.991 5 C 0.155 3.845 6 H 0.077 0.923 7 C -0.588 4.588 8 H 0.077 0.923 9 C -0.129 4.129 10 N -0.523 5.523 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.207 1.207 15 N -0.287 5.287 16 C -0.040 4.040 17 C -0.231 4.231 18 C -0.245 4.245 19 N -0.151 5.151 20 C -0.045 4.045 21 N -0.154 5.154 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.167 0.833 26 H 0.079 0.921 27 H 0.192 0.808 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.000 -2.558 0.202 6.526 hybrid contribution 1.481 0.663 -1.497 2.207 sum -4.519 -1.896 -1.295 5.069 Atomic orbital electron populations 1.20024 0.87973 1.02226 1.01924 1.22177 0.96162 0.91772 1.01121 1.21229 0.91043 0.99387 1.19353 1.21703 0.98017 0.83804 0.95589 1.17735 0.85342 0.83930 0.97471 0.92332 1.21605 1.04991 1.19738 1.12470 0.92287 1.24950 0.97209 0.94564 0.96173 1.69696 1.23928 1.22005 1.36703 0.86474 0.80310 0.78693 0.82263 1.19696 1.20719 1.20691 1.60526 1.29806 1.07399 1.30978 1.22044 0.96387 0.92002 0.93575 1.23105 0.91934 1.06691 1.01323 1.23125 1.02528 0.99835 0.99053 1.48126 1.04531 1.04742 1.57716 1.21990 0.85743 0.94328 1.02449 1.77063 0.86960 1.23047 1.28314 0.91466 0.91085 0.91944 0.83289 0.92137 0.80831 0.88684 0.90225 0.89367 0.89574 0.90318 0.92201 0.91142 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.45 36.00 0.38 -0.54 16 2 C 0.05 1.04 7.22 -82.41 -0.59 0.45 16 3 C -0.28 -5.94 9.04 -40.01 -0.36 -6.30 16 4 C 0.14 3.08 5.66 -82.26 -0.47 2.62 16 5 C 0.27 6.25 2.75 -70.02 -0.19 6.06 16 6 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 7 C -0.55 -13.43 5.52 -34.44 -0.19 -13.62 16 8 H 0.06 1.49 6.90 -52.49 -0.36 1.13 16 9 C 0.08 1.86 5.38 -17.82 -0.10 1.76 16 10 N -0.89 -22.46 11.54 55.43 0.64 -21.82 16 11 Si 0.90 19.69 29.54 -169.99 -5.02 14.66 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 N -0.65 -14.69 6.32 -102.17 -0.65 -15.34 16 16 C 0.07 1.50 3.69 -67.71 -0.25 1.25 16 17 C -0.19 -3.38 8.79 -26.73 -0.23 -3.61 16 18 C -0.21 -3.83 10.33 -26.73 -0.28 -4.11 16 19 N -0.37 -7.94 4.01 -63.89 -0.26 -8.20 16 20 C 0.10 1.75 11.15 59.84 0.67 2.42 16 21 N -0.33 -7.05 12.58 33.67 0.42 -6.62 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.15 3.03 5.39 -52.49 -0.28 2.75 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.37 8.81 6.77 -39.29 -0.27 8.55 16 28 H 0.10 2.21 6.90 -51.93 -0.36 1.85 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.11 2.16 5.37 -51.93 -0.28 1.88 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -26.66 286.33 -7.07 -33.74 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -4.91 Total: 12.89 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.62 Total: -13.63 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.16 Total: -51.98 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.66 -7.07 -33.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.907 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds