Wall clock time and date at job start Mon Mar 30 2020 03:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39875 * 125.89658 * 2 1 4 4 C 1.35313 * 107.92089 * 180.14037 * 3 2 1 5 5 C 1.50698 * 126.13084 * 179.90300 * 4 3 2 6 6 H 1.09000 * 109.46995 * 114.68958 * 5 4 3 7 7 C 1.50700 * 109.47259 * 234.68810 * 5 4 3 8 8 H 1.08000 * 120.00091 * 0.02562 * 7 5 4 9 9 C 1.37880 * 120.00087 * 179.97438 * 7 5 4 10 10 N 1.31519 * 119.99717 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 119.99881 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47506 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47137 * 120.00669 * 11 9 7 14 14 H 1.48509 * 109.46929 * 240.00314 * 11 9 7 15 15 N 1.46898 * 109.46945 * 354.68841 * 5 4 3 16 16 C 1.46904 * 111.00018 * 300.00189 * 15 5 4 17 17 C 1.53001 * 117.51936 * 136.28321 * 16 15 5 18 18 C 1.52999 * 60.00190 * 107.47915 * 17 16 15 19 19 N 1.34951 * 107.74617 * 359.63931 * 4 3 2 20 20 C 1.46495 * 126.03929 * 180.24959 * 19 4 3 21 21 N 1.30836 * 125.90368 * 179.73573 * 2 1 3 22 22 H 1.09005 * 109.47109 * 270.23520 * 1 2 3 23 23 H 1.08999 * 109.47386 * 30.24130 * 1 2 3 24 24 H 1.09005 * 109.46759 * 150.23713 * 1 2 3 25 25 H 1.08002 * 126.04341 * 0.02562 * 3 2 1 26 26 H 0.96998 * 119.99695 * 179.97438 * 10 9 7 27 27 H 1.00897 * 111.00673 * 176.04659 * 15 5 4 28 28 H 1.09002 * 115.55029 * 350.58057 * 16 15 5 29 29 H 1.09001 * 117.49733 * 214.97346 * 17 16 15 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 33 33 H 1.09001 * 109.47478 * 90.00037 * 20 19 4 34 34 H 1.09007 * 109.47105 * 210.00070 * 20 19 4 35 35 H 1.09001 * 109.47329 * 329.99842 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5990 -0.0064 6 1 5.3833 1.4644 0.9260 7 6 5.7205 1.2280 -1.1679 8 1 5.4283 0.4324 -1.8372 9 6 6.9033 1.9051 -1.3769 10 7 7.2589 2.8744 -0.5622 11 14 8.0006 1.4457 -2.8171 12 1 7.3792 0.3318 -3.5773 13 1 8.1652 2.6217 -3.7088 14 1 9.3297 1.0189 -2.3104 15 7 4.4228 3.0032 -0.1338 16 6 3.6793 3.2225 -1.3817 17 6 2.4147 4.0807 -1.3096 18 6 3.6802 4.6368 -1.9654 19 7 3.6088 -0.6340 0.0030 20 6 4.7899 -1.5006 0.0075 21 7 2.2742 -1.0598 0.0049 22 1 -0.3633 0.0042 1.0277 23 1 -0.3634 0.8878 -0.5176 24 1 -0.3633 -0.8922 -0.5102 25 1 1.9923 2.1599 0.0004 26 1 8.0911 3.3505 -0.7090 27 1 5.2185 3.6206 -0.0738 28 1 3.6822 2.3884 -2.0834 29 1 1.5856 3.8111 -1.9640 30 1 2.1339 4.4824 -0.3361 31 1 4.2322 5.4046 -1.4232 32 1 3.6838 4.7331 -3.0511 33 1 5.0825 -1.7109 1.0362 34 1 4.5566 -2.4355 -0.5022 35 1 5.6096 -1.0003 -0.5083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:55 Heat of formation + Delta-G solvation = 82.651256 kcal Electronic energy + Delta-G solvation = -17185.722156 eV Core-core repulsion = 14606.426545 eV Total energy + Delta-G solvation = -2579.295612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.00546 -38.59986 -35.94592 -34.46343 -33.25744 -30.53199 -29.99374 -28.03534 -26.11916 -24.54465 -23.11938 -21.85686 -20.80483 -19.92739 -18.53116 -17.45308 -16.65394 -16.45419 -16.09197 -15.69580 -14.87603 -14.54102 -14.33086 -14.20889 -13.78763 -13.67565 -13.30481 -13.15613 -13.02960 -12.88581 -12.68187 -12.54782 -12.21060 -12.12540 -11.68452 -11.32290 -11.02042 -10.91957 -10.70283 -9.75003 -9.10837 -8.91440 -8.12111 -6.39356 1.18542 1.34533 1.40664 1.48308 1.87564 2.10633 2.36161 3.01965 3.25792 3.74305 3.91125 4.12048 4.30571 4.37076 4.42721 4.48126 4.56357 4.81299 4.84263 4.90219 4.92522 5.00684 5.06574 5.09683 5.23553 5.27372 5.32642 5.45389 5.60367 5.68360 5.96515 6.10016 6.36352 6.55182 6.78035 7.01232 7.08811 7.35077 8.79817 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.010811 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.402733 B = 2589.386673 C = 3496.599385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.053 3.947 3 C -0.285 4.285 4 C 0.115 3.885 5 C 0.272 3.728 6 H 0.028 0.972 7 C -0.547 4.547 8 H 0.046 0.954 9 C 0.039 3.961 10 N -0.905 5.905 11 Si 0.949 3.051 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.277 1.277 15 N -0.649 5.649 16 C 0.044 3.956 17 C -0.162 4.162 18 C -0.201 4.201 19 N -0.381 5.381 20 C 0.094 3.906 21 N -0.346 5.346 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.155 0.845 26 H 0.270 0.730 27 H 0.354 0.646 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 -1.133 -0.842 7.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.113 4.113 3 C -0.314 4.314 4 C -0.014 4.014 5 C 0.162 3.838 6 H 0.045 0.955 7 C -0.586 4.586 8 H 0.064 0.936 9 C -0.163 4.163 10 N -0.544 5.544 11 Si 0.776 3.224 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.202 1.202 15 N -0.282 5.282 16 C -0.067 4.067 17 C -0.200 4.200 18 C -0.239 4.239 19 N -0.163 5.163 20 C -0.047 4.047 21 N -0.170 5.170 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.173 0.827 26 H 0.079 0.921 27 H 0.177 0.823 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.445 -2.458 -0.384 7.849 hybrid contribution 1.887 0.622 -1.304 2.377 sum -5.557 -1.835 -1.689 6.091 Atomic orbital electron populations 1.20206 0.84242 1.03804 1.03637 1.22949 0.98445 0.90587 0.99289 1.21399 0.90823 1.00161 1.19004 1.21642 0.98168 0.84432 0.97151 1.17468 0.85765 0.84969 0.95595 0.95478 1.21601 1.05360 1.19241 1.12429 0.93553 1.25502 0.98184 0.94608 0.98013 1.69779 1.24246 1.22596 1.37733 0.85637 0.78927 0.78075 0.79787 1.19964 1.20821 1.20223 1.60565 1.29112 1.06421 1.32134 1.21920 0.99280 0.92513 0.93004 1.23128 0.91369 1.03650 1.01868 1.23180 1.02973 0.97836 0.99894 1.48391 1.05334 1.04704 1.57865 1.22082 0.84607 0.94491 1.03506 1.77035 0.86981 1.23948 1.29056 0.89563 0.89080 0.90808 0.82730 0.92060 0.82265 0.91387 0.88043 0.88668 0.89698 0.89026 0.90704 0.89153 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.56 10.45 71.23 0.74 -0.82 16 2 C 0.05 1.98 7.22 43.10 0.31 2.29 16 3 C -0.29 -11.79 9.04 21.99 0.20 -11.59 16 4 C 0.11 5.19 5.66 41.40 0.23 5.43 16 5 C 0.27 13.19 2.75 43.42 0.12 13.31 16 6 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.55 -27.40 5.52 25.60 0.14 -27.25 16 8 H 0.05 2.40 6.90 -2.91 -0.02 2.38 16 9 C 0.04 1.95 5.38 84.65 0.46 2.40 16 10 N -0.90 -46.58 11.54 21.45 0.25 -46.33 16 11 Si 0.95 40.68 29.54 68.60 2.03 42.71 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 15 N -0.65 -29.63 6.32 -477.16 -3.02 -32.65 16 16 C 0.04 1.83 3.69 44.92 0.17 1.99 16 17 C -0.16 -5.31 8.79 30.59 0.27 -5.04 16 18 C -0.20 -7.10 10.33 30.60 0.32 -6.79 16 19 N -0.38 -16.39 4.01 -356.03 -1.43 -17.82 16 20 C 0.09 3.43 11.15 127.77 1.42 4.85 16 21 N -0.35 -14.42 12.58 -47.39 -0.60 -15.01 16 22 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.16 6.07 5.39 -2.91 -0.02 6.05 16 26 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 27 H 0.35 17.38 6.77 -89.70 -0.61 16.77 16 28 H 0.07 3.19 6.90 -2.39 -0.02 3.17 16 29 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.10 3.82 5.37 -2.39 -0.01 3.81 16 Total: -1.00 -56.87 286.33 2.10 -54.78 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.48 Total: 35.54 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.38 Total: -21.21 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.79 Total: -111.81 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -56.87 2.10 -54.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.428 kcal (2) G-P(sol) polarization free energy of solvation -56.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds