Wall clock time and date at job start Mon Mar 30 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.35198 * 126.19030 * 2 1 4 4 H 0.96999 * 126.00241 * 359.97438 * 3 2 1 5 5 N 1.40309 * 107.99240 * 179.97438 * 3 2 1 6 6 C 1.30128 * 108.12539 * 359.96039 * 5 3 2 7 7 C 1.34571 * 126.18994 * 180.02562 * 2 1 3 8 8 C 1.50878 * 128.33192 * 0.10531 * 7 2 1 9 9 C 1.50703 * 109.71775 * 283.12175 * 8 7 2 10 10 H 1.08000 * 119.99898 * 354.87585 * 9 8 7 11 11 C 1.37880 * 120.00196 * 174.88087 * 9 8 7 12 12 N 1.31521 * 119.99934 * 7.58779 * 11 9 8 13 13 Si 1.86794 * 120.00127 * 187.31232 * 11 9 8 14 14 H 1.48498 * 109.47108 * 180.27473 * 13 11 9 15 15 H 1.48500 * 109.47359 * 300.27428 * 13 11 9 16 16 H 1.48507 * 109.47023 * 60.27500 * 13 11 9 17 17 C 1.53000 * 109.71734 * 43.72341 * 8 7 2 18 18 N 1.46896 * 109.47044 * 51.79895 * 17 8 7 19 19 C 1.53381 * 108.23572 * 163.42416 * 8 7 2 20 20 C 1.53122 * 109.67421 * 50.51333 * 19 8 7 21 21 C 1.50941 * 128.28401 * 180.29875 * 6 5 3 22 22 H 1.08999 * 109.46561 * 262.36607 * 1 2 3 23 23 H 1.08999 * 109.46988 * 22.36978 * 1 2 3 24 24 H 1.09005 * 109.46962 * 142.37290 * 1 2 3 25 25 H 0.96998 * 119.99616 * 359.34752 * 12 11 9 26 26 H 1.09000 * 109.47084 * 171.80721 * 17 8 7 27 27 H 1.09005 * 109.47334 * 291.80351 * 17 8 7 28 28 H 1.00899 * 110.99882 * 173.91024 * 18 17 8 29 29 H 1.00891 * 111.00221 * 297.86783 * 18 17 8 30 30 H 1.08996 * 109.43126 * 170.63779 * 19 8 7 31 31 H 1.09008 * 109.42476 * 290.47870 * 19 8 7 32 32 H 1.08996 * 109.41127 * 168.20571 * 20 19 8 33 33 H 1.09002 * 109.36689 * 48.36122 * 20 19 8 34 34 H 1.09000 * 109.72222 * 282.84354 * 21 6 5 35 35 H 1.09001 * 109.72123 * 43.48808 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3054 1.0911 0.0000 4 1 2.0087 2.0146 -0.0004 5 7 3.6383 0.6529 0.0006 6 6 3.6366 -0.6483 0.0018 7 6 2.3016 -1.0861 -0.0005 8 6 1.8990 -2.5401 -0.0033 9 6 1.4509 -2.9463 1.3770 10 1 1.5335 -2.2499 2.1983 11 6 0.9355 -4.2071 1.5914 12 7 0.9719 -5.1045 0.6307 13 14 0.1926 -4.6429 3.2489 14 1 -0.2811 -6.0501 3.2244 15 1 1.2204 -4.4850 4.3091 16 1 -0.9523 -3.7401 3.5310 17 6 0.7596 -2.7583 -1.0008 18 7 1.1353 -2.1946 -2.3043 19 6 3.1171 -3.3747 -0.4184 20 6 4.3284 -2.9756 0.4290 21 6 4.8202 -1.5850 0.0090 22 1 -0.3632 -0.1365 1.0186 23 1 -0.3633 0.9503 -0.3911 24 1 -0.3633 -0.8140 -0.6274 25 1 1.3527 -4.8764 -0.2318 26 1 0.5698 -3.8263 -1.1078 27 1 -0.1413 -2.2639 -0.6373 28 1 0.4432 -2.4123 -3.0054 29 1 1.2827 -1.1987 -2.2386 30 1 2.9005 -4.4322 -0.2678 31 1 3.3368 -3.1967 -1.4712 32 1 5.1276 -3.7022 0.2834 33 1 4.0432 -2.9563 1.4809 34 1 5.2556 -1.6353 -0.9890 35 1 5.5668 -1.2288 0.7188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260387660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:35 Heat of formation + Delta-G solvation = 73.295580 kcal Electronic energy + Delta-G solvation = -17900.353961 eV Core-core repulsion = 15320.652657 eV Total energy + Delta-G solvation = -2579.701304 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90295 -36.96375 -34.24373 -32.31395 -31.29522 -29.58594 -28.70113 -26.01998 -25.04203 -23.91339 -21.60840 -20.29354 -18.92228 -18.09534 -16.96323 -16.07279 -15.09319 -14.19433 -14.06695 -13.81490 -13.71976 -13.67489 -13.02819 -12.49222 -12.11105 -11.81927 -11.61609 -11.59124 -11.40696 -10.93506 -10.78158 -10.40742 -10.24201 -10.05073 -9.90433 -9.43525 -9.23499 -8.66712 -8.54119 -8.26404 -7.68053 -7.32210 -6.17058 -4.00115 2.56232 3.44545 3.45433 3.47688 3.62374 3.64896 4.56000 5.24247 5.31217 5.37339 5.56051 5.62461 5.83879 5.89203 5.93739 6.12731 6.23104 6.37935 6.44947 6.56451 6.57449 6.73002 6.85302 6.88431 7.01958 7.22358 7.34061 7.50380 7.63934 7.71911 7.92707 8.00391 8.23246 8.39037 8.45037 8.52196 8.95276 9.67810 11.07243 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.011465 C = 0.010636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.338237 B = 2441.628510 C = 2631.817352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.057 3.943 3 N -0.499 5.499 4 H 0.426 0.574 5 N -0.310 5.310 6 C 0.081 3.919 7 C -0.155 4.155 8 C 0.137 3.863 9 C -0.574 4.574 10 H 0.046 0.954 11 C 0.027 3.973 12 N -0.918 5.918 13 Si 1.059 2.941 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.055 3.945 18 N -0.851 5.851 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.033 4.033 22 H 0.078 0.922 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.281 0.719 26 H 0.084 0.916 27 H 0.023 0.977 28 H 0.320 0.680 29 H 0.327 0.673 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.059 7.127 -2.427 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 N -0.209 5.209 4 H 0.267 0.733 5 N -0.133 5.133 6 C -0.087 4.087 7 C -0.166 4.166 8 C 0.135 3.865 9 C -0.613 4.613 10 H 0.064 0.936 11 C -0.177 4.177 12 N -0.558 5.558 13 Si 0.888 3.112 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.217 1.217 17 C -0.075 4.075 18 N -0.379 5.379 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.072 4.072 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.573 6.417 -1.521 6.620 hybrid contribution -0.855 1.828 -0.597 2.105 sum -0.282 8.246 -2.119 8.518 Atomic orbital electron populations 1.20624 0.88386 1.02007 1.03968 1.20392 0.93877 0.87492 1.04992 1.46094 1.03798 1.07290 1.63734 0.73254 1.76797 0.96731 1.12912 1.26865 1.22328 0.96584 0.90891 0.98909 1.20142 0.90703 0.96963 1.08779 1.16858 0.90789 0.85049 0.93852 1.21774 1.45037 1.01173 0.93298 0.93567 1.25593 0.95426 0.92517 1.04210 1.70883 1.43645 1.35688 1.05590 0.83686 0.76386 0.76087 0.75030 1.20928 1.21634 1.21740 1.22358 0.97381 1.00279 0.87502 1.58874 1.51907 1.17912 1.09221 1.21721 0.94724 1.01379 0.96857 1.21490 0.97693 0.93151 1.02124 1.20083 0.92508 0.93475 1.01123 0.90379 0.93008 0.89087 0.90211 0.89817 0.95898 0.86995 0.86083 0.91125 0.93794 0.93295 0.90908 0.91106 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.82 36.01 0.35 -1.12 16 2 C 0.06 1.08 6.20 -82.40 -0.51 0.56 16 3 N -0.50 -8.77 7.37 33.39 0.25 -8.52 16 4 H 0.43 5.82 8.96 -182.44 -1.64 4.19 16 5 N -0.31 -6.26 12.68 33.75 0.43 -5.84 16 6 C 0.08 1.70 7.10 -82.35 -0.58 1.12 16 7 C -0.16 -3.35 3.65 -104.98 -0.38 -3.73 16 8 C 0.14 3.15 0.27 -156.53 -0.04 3.11 16 9 C -0.57 -14.87 7.08 -34.44 -0.24 -15.12 16 10 H 0.05 1.26 7.76 -52.49 -0.41 0.85 16 11 C 0.03 0.71 5.11 -17.82 -0.09 0.62 16 12 N -0.92 -25.36 12.42 55.43 0.69 -24.67 16 13 Si 1.06 24.12 29.91 -169.99 -5.08 19.04 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.05 1.19 4.54 -3.83 -0.02 1.18 16 18 N -0.85 -15.94 8.84 -10.37 -0.09 -16.04 16 19 C -0.11 -2.48 4.30 -26.47 -0.11 -2.59 16 20 C -0.11 -2.20 5.83 -26.48 -0.15 -2.35 16 21 C -0.03 -0.62 6.31 -27.58 -0.17 -0.79 16 22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.53 4.42 -51.93 -0.23 1.30 16 25 H 0.28 7.63 3.40 -40.82 -0.14 7.50 16 26 H 0.08 2.04 5.35 -51.93 -0.28 1.76 16 27 H 0.02 0.50 5.11 -51.93 -0.27 0.24 16 28 H 0.32 5.21 9.08 -39.29 -0.36 4.85 16 29 H 0.33 6.02 6.87 -39.30 -0.27 5.75 16 30 H 0.07 1.77 5.46 -51.93 -0.28 1.49 16 31 H 0.04 0.99 7.57 -51.92 -0.39 0.59 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.65 7.27 -51.93 -0.38 1.28 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 264.72 15.07 3.99 3.99 Total: -1.00 -29.11 264.72 -7.33 -36.45 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.54 Total: 14.71 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.96 Total: -19.12 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 1.27 Total: -55.07 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.11 -7.33 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.741 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds