Wall clock time and date at job start Mon Mar 30 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.35198 * 126.19030 * 2 1 4 4 H 0.96999 * 126.00241 * 359.97438 * 3 2 1 5 5 N 1.40309 * 107.99240 * 179.97438 * 3 2 1 6 6 C 1.30128 * 108.12539 * 359.96039 * 5 3 2 7 7 C 1.34571 * 126.18994 * 180.02562 * 2 1 3 8 8 C 1.50878 * 128.33192 * 0.10531 * 7 2 1 9 9 C 1.50703 * 109.71775 * 283.12175 * 8 7 2 10 10 H 1.08000 * 119.99898 * 354.87585 * 9 8 7 11 11 C 1.37880 * 120.00196 * 174.88087 * 9 8 7 12 12 N 1.31521 * 119.99934 * 7.58779 * 11 9 8 13 13 Si 1.86794 * 120.00127 * 187.31232 * 11 9 8 14 14 H 1.48498 * 109.47108 * 180.27473 * 13 11 9 15 15 H 1.48500 * 109.47359 * 300.27428 * 13 11 9 16 16 H 1.48507 * 109.47023 * 60.27500 * 13 11 9 17 17 C 1.53000 * 109.71734 * 43.72341 * 8 7 2 18 18 N 1.46896 * 109.47044 * 51.79895 * 17 8 7 19 19 C 1.53381 * 108.23572 * 163.42416 * 8 7 2 20 20 C 1.53122 * 109.67421 * 50.51333 * 19 8 7 21 21 C 1.50941 * 128.28401 * 180.29875 * 6 5 3 22 22 H 1.08999 * 109.46561 * 262.36607 * 1 2 3 23 23 H 1.08999 * 109.46988 * 22.36978 * 1 2 3 24 24 H 1.09005 * 109.46962 * 142.37290 * 1 2 3 25 25 H 0.96998 * 119.99616 * 359.34752 * 12 11 9 26 26 H 1.09000 * 109.47084 * 171.80721 * 17 8 7 27 27 H 1.09005 * 109.47334 * 291.80351 * 17 8 7 28 28 H 1.00899 * 110.99882 * 173.91024 * 18 17 8 29 29 H 1.00891 * 111.00221 * 297.86783 * 18 17 8 30 30 H 1.08996 * 109.43126 * 170.63779 * 19 8 7 31 31 H 1.09008 * 109.42476 * 290.47870 * 19 8 7 32 32 H 1.08996 * 109.41127 * 168.20571 * 20 19 8 33 33 H 1.09002 * 109.36689 * 48.36122 * 20 19 8 34 34 H 1.09000 * 109.72222 * 282.84354 * 21 6 5 35 35 H 1.09001 * 109.72123 * 43.48808 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3054 1.0911 0.0000 4 1 2.0087 2.0146 -0.0004 5 7 3.6383 0.6529 0.0006 6 6 3.6366 -0.6483 0.0018 7 6 2.3016 -1.0861 -0.0005 8 6 1.8990 -2.5401 -0.0033 9 6 1.4509 -2.9463 1.3770 10 1 1.5335 -2.2499 2.1983 11 6 0.9355 -4.2071 1.5914 12 7 0.9719 -5.1045 0.6307 13 14 0.1926 -4.6429 3.2489 14 1 -0.2811 -6.0501 3.2244 15 1 1.2204 -4.4850 4.3091 16 1 -0.9523 -3.7401 3.5310 17 6 0.7596 -2.7583 -1.0008 18 7 1.1353 -2.1946 -2.3043 19 6 3.1171 -3.3747 -0.4184 20 6 4.3284 -2.9756 0.4290 21 6 4.8202 -1.5850 0.0090 22 1 -0.3632 -0.1365 1.0186 23 1 -0.3633 0.9503 -0.3911 24 1 -0.3633 -0.8140 -0.6274 25 1 1.3527 -4.8764 -0.2318 26 1 0.5698 -3.8263 -1.1078 27 1 -0.1413 -2.2639 -0.6373 28 1 0.4432 -2.4123 -3.0054 29 1 1.2827 -1.1987 -2.2386 30 1 2.9005 -4.4322 -0.2678 31 1 3.3368 -3.1967 -1.4712 32 1 5.1276 -3.7022 0.2834 33 1 4.0432 -2.9563 1.4809 34 1 5.2556 -1.6353 -0.9890 35 1 5.5668 -1.2288 0.7188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260387660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:35 Heat of formation + Delta-G solvation = 53.138488 kcal Electronic energy + Delta-G solvation = -17901.228038 eV Core-core repulsion = 15320.652657 eV Total energy + Delta-G solvation = -2580.575381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.44433 -38.68738 -35.81401 -34.17463 -32.81511 -31.15413 -30.33030 -27.51375 -26.88113 -25.69799 -23.24324 -21.95108 -20.51758 -19.87921 -18.63401 -17.65251 -16.67258 -15.77605 -15.70540 -15.54317 -15.43143 -15.29392 -14.63459 -14.02746 -13.58223 -13.41858 -13.26121 -13.16104 -13.02317 -12.67574 -12.56318 -12.02810 -11.96644 -11.82707 -11.69585 -11.12667 -10.90942 -10.57547 -10.20256 -10.02406 -9.28906 -8.94171 -8.21368 -6.06611 1.04865 1.59308 1.63890 1.83356 2.02718 2.09900 2.68290 3.34918 3.74290 3.91743 4.05045 4.24348 4.27844 4.37347 4.49072 4.60425 4.72893 4.85161 4.92210 4.94888 5.01052 5.08009 5.17659 5.28199 5.38510 5.46099 5.60078 5.75936 5.95862 5.98003 6.26192 6.45782 6.54431 6.62951 6.78063 6.92912 6.96292 7.66599 9.01949 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.011465 C = 0.010636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.338237 B = 2441.628510 C = 2631.817352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.068 3.932 3 N -0.481 5.481 4 H 0.444 0.556 5 N -0.320 5.320 6 C 0.062 3.938 7 C -0.191 4.191 8 C 0.134 3.866 9 C -0.574 4.574 10 H 0.026 0.974 11 C -0.013 4.013 12 N -0.941 5.941 13 Si 1.095 2.905 14 H -0.289 1.289 15 H -0.284 1.284 16 H -0.276 1.276 17 C 0.068 3.932 18 N -0.846 5.846 19 C -0.104 4.104 20 C -0.101 4.101 21 C -0.028 4.028 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.277 0.723 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.336 0.664 29 H 0.333 0.667 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 8.818 -2.631 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 N -0.193 5.193 4 H 0.290 0.710 5 N -0.144 5.144 6 C -0.105 4.105 7 C -0.202 4.202 8 C 0.133 3.867 9 C -0.613 4.613 10 H 0.044 0.956 11 C -0.213 4.213 12 N -0.583 5.583 13 Si 0.921 3.079 14 H -0.214 1.214 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.063 4.063 18 N -0.375 5.375 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.067 4.067 22 H 0.091 0.909 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.413 8.152 -1.740 8.346 hybrid contribution -0.812 1.370 -0.563 1.689 sum -0.399 9.522 -2.303 9.805 Atomic orbital electron populations 1.20668 0.86362 1.04033 1.03767 1.20714 0.95090 0.87169 1.02816 1.46085 1.02933 1.08105 1.62198 0.70990 1.76745 0.97942 1.12422 1.27256 1.22618 0.97031 0.91471 0.99355 1.20107 0.91715 0.96679 1.11686 1.16739 0.90992 0.86404 0.92613 1.21920 1.44496 1.00565 0.94301 0.95589 1.26561 0.95778 0.92814 1.06116 1.70939 1.45045 1.36287 1.05999 0.83192 0.76430 0.75803 0.72513 1.21433 1.20996 1.20144 1.22038 0.97010 0.98565 0.88672 1.58716 1.52474 1.18193 1.08166 1.21615 0.95818 0.99546 0.97210 1.21400 0.97474 0.95141 0.99905 1.20086 0.92369 0.91795 1.02485 0.90856 0.88849 0.89902 0.90718 0.92721 0.95924 0.85234 0.85417 0.94069 0.93751 0.91305 0.93643 0.89442 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 9.82 71.24 0.70 -1.96 16 2 C 0.07 2.44 6.20 41.20 0.26 2.69 16 3 N -0.48 -15.55 7.37 -48.28 -0.36 -15.91 16 4 H 0.44 10.59 8.96 -213.19 -1.91 8.68 16 5 N -0.32 -12.21 12.68 -47.14 -0.60 -12.81 16 6 C 0.06 2.53 7.10 43.44 0.31 2.84 16 7 C -0.19 -8.03 3.65 -20.10 -0.07 -8.10 16 8 C 0.13 6.21 0.27 -53.49 -0.01 6.20 16 9 C -0.57 -30.09 7.08 25.60 0.18 -29.91 16 10 H 0.03 1.43 7.76 -2.91 -0.02 1.41 16 11 C -0.01 -0.68 5.11 84.65 0.43 -0.25 16 12 N -0.94 -53.14 12.42 21.45 0.27 -52.88 16 13 Si 1.10 48.92 29.91 68.60 2.05 50.97 16 14 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 17 C 0.07 2.95 4.54 86.30 0.39 3.35 16 18 N -0.85 -30.76 8.84 -186.72 -1.65 -32.40 16 19 C -0.10 -4.77 4.30 30.76 0.13 -4.64 16 20 C -0.10 -4.14 5.83 30.76 0.18 -3.96 16 21 C -0.03 -1.03 6.31 30.04 0.19 -0.84 16 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 2.62 4.42 -2.38 -0.01 2.61 16 25 H 0.28 15.51 3.40 -92.71 -0.32 15.19 16 26 H 0.05 2.72 5.35 -2.39 -0.01 2.70 16 27 H 0.02 0.99 5.11 -2.38 -0.01 0.97 16 28 H 0.34 10.46 9.08 -89.69 -0.81 9.64 16 29 H 0.33 11.63 6.87 -89.70 -0.62 11.01 16 30 H 0.04 2.12 5.46 -2.39 -0.01 2.11 16 31 H 0.04 1.99 7.57 -2.38 -0.02 1.97 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.04 2.08 7.27 -2.39 -0.02 2.07 16 34 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -62.42 264.72 0.66 -61.76 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -1.74 Total: 35.86 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 2.68 Total: -34.59 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -2.34 Total: -113.99 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.97 kcal Total: -62.42 0.66 -61.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.898 kcal (2) G-P(sol) polarization free energy of solvation -62.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds