Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48536 * 110.99936 * 2 1 4 4 C 1.54934 * 103.38126 * 159.80763 * 3 2 1 5 5 C 1.54599 * 102.91699 * 322.50765 * 4 3 2 6 6 H 1.09009 * 110.30733 * 262.93549 * 5 4 3 7 7 C 1.50700 * 110.31159 * 140.87593 * 5 4 3 8 8 H 1.07997 * 119.99740 * 245.39167 * 7 5 4 9 9 C 1.37877 * 120.00231 * 65.38350 * 7 5 4 10 10 N 1.31514 * 119.99826 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 119.99997 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47248 * 60.00139 * 11 9 7 13 13 H 1.48506 * 109.47189 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47256 * 300.00002 * 11 9 7 15 15 C 1.48313 * 111.20203 * 117.25831 * 2 1 3 16 16 C 1.53007 * 110.04582 * 333.68088 * 15 2 1 17 17 C 1.50697 * 109.90245 * 94.84746 * 15 2 1 18 18 C 1.39864 * 126.04558 * 200.94993 * 17 15 2 19 19 N 1.30842 * 108.20639 * 179.97438 * 18 17 15 20 20 N 1.40087 * 108.20285 * 0.02562 * 19 18 17 21 21 H 0.96996 * 126.03685 * 179.97438 * 20 19 18 22 22 C 1.34949 * 107.92609 * 359.75710 * 20 19 18 23 23 H 1.08997 * 109.47943 * 59.87169 * 1 2 3 24 24 H 1.09002 * 109.47040 * 179.87241 * 1 2 3 25 25 H 1.09000 * 109.47106 * 299.86753 * 1 2 3 26 26 H 1.09005 * 110.66356 * 41.28808 * 3 2 1 27 27 H 1.09004 * 110.66964 * 278.33159 * 3 2 1 28 28 H 1.08995 * 110.72489 * 80.85676 * 4 3 2 29 29 H 1.08996 * 110.72621 * 203.97189 * 4 3 2 30 30 H 0.97005 * 120.00019 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.46939 * 302.26964 * 16 15 2 32 32 H 1.09002 * 109.47053 * 62.26580 * 16 15 2 33 33 H 1.09000 * 109.47155 * 182.26745 * 16 15 2 34 34 H 1.08001 * 125.89634 * 359.97438 * 18 17 15 35 35 H 1.07998 * 126.12950 * 180.24412 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2145 0.5203 5 6 3.3037 0.1106 1.5926 6 1 3.2219 0.5552 2.5845 7 6 4.4790 -0.8312 1.5381 8 1 4.3317 -1.8624 1.2531 9 6 5.7421 -0.3762 1.8517 10 7 5.9213 0.8795 2.1991 11 14 7.1989 -1.5435 1.7834 12 1 7.3418 -2.0767 0.4048 13 1 8.4359 -0.8141 2.1621 14 1 6.9775 -2.6673 2.7283 15 6 2.0053 -0.6333 1.2292 16 6 0.9938 -0.5041 2.3699 17 6 2.3025 -2.0876 0.9692 18 6 2.4200 -3.0896 1.9379 19 7 2.6809 -4.2181 1.3293 20 7 2.7384 -3.9693 -0.0481 21 1 2.9162 -4.6258 -0.7396 22 6 2.4979 -2.6559 -0.2433 23 1 -0.3635 0.5158 -0.8888 24 1 -0.3633 -1.0277 -0.0023 25 1 -0.3633 0.5118 0.8912 26 1 1.4236 2.0205 0.6730 27 1 2.0012 1.7989 -1.0091 28 1 4.1119 0.8874 -0.2819 29 1 3.8136 2.1414 0.9641 30 1 6.8101 1.1997 2.4194 31 1 0.7693 0.5490 2.5389 32 1 0.0782 -1.0329 2.1052 33 1 1.4135 -0.9365 3.2783 34 1 2.3137 -2.9550 3.0043 35 1 2.4687 -2.1486 -1.1963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260410463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = 91.024710 kcal Electronic energy + Delta-G solvation = -17700.953457 eV Core-core repulsion = 15122.020946 eV Total energy + Delta-G solvation = -2578.932511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.63208 -38.35163 -33.13779 -31.68867 -30.56149 -30.23207 -28.15654 -26.15878 -24.66328 -23.10792 -21.25740 -20.36451 -19.83810 -18.16425 -16.90800 -15.78275 -14.92640 -14.83492 -14.32687 -13.71266 -13.63138 -13.31533 -12.92438 -12.38651 -12.18337 -11.75963 -11.70773 -11.28096 -11.24823 -10.89236 -10.77943 -10.60093 -10.55115 -10.26131 -9.81237 -9.62831 -9.11917 -8.84344 -8.65395 -8.29090 -7.70538 -7.32772 -5.91073 -3.88987 2.73542 3.38548 3.42356 3.47600 3.65032 3.72991 4.54005 4.71841 5.41333 5.52306 5.67935 5.76927 5.85082 5.86438 5.97312 6.07383 6.14676 6.18634 6.25977 6.37272 6.40205 6.62370 6.69112 6.76341 6.92359 7.19402 7.26747 7.43138 7.55115 7.69657 7.87088 8.02151 8.04699 8.12401 8.45277 8.57310 9.14263 9.74541 11.19762 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.013269 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.329946 B = 2109.641659 C = 2980.151341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.512 5.512 3 C 0.029 3.971 4 C -0.094 4.094 5 C 0.056 3.944 6 H 0.034 0.966 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.883 3.117 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.164 3.836 16 C -0.158 4.158 17 C -0.151 4.151 18 C 0.063 3.937 19 N -0.318 5.318 20 N -0.495 5.495 21 H 0.428 0.572 22 C 0.062 3.938 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.257 0.743 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.171 0.829 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -2.313 -3.979 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.236 5.236 3 C -0.099 4.099 4 C -0.132 4.132 5 C 0.037 3.963 6 H 0.052 0.948 7 C -0.534 4.534 8 H 0.089 0.911 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.711 3.289 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.074 3.926 16 C -0.216 4.216 17 C -0.162 4.162 18 C -0.124 4.124 19 N -0.141 5.141 20 N -0.204 5.204 21 H 0.270 0.730 22 C -0.083 4.083 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.608 -3.684 -4.237 10.277 hybrid contribution 0.666 0.528 0.210 0.876 sum -7.942 -3.156 -4.027 9.447 Atomic orbital electron populations 1.22474 0.90046 1.01048 0.99681 1.64752 1.06126 1.15111 1.37575 1.23320 0.98318 0.89002 0.99276 1.22434 0.91565 0.99879 0.99365 1.19526 0.90003 0.92306 0.94475 0.94827 1.21435 0.90969 0.96698 1.44339 0.91054 1.24948 0.98653 0.94766 0.95630 1.69962 1.22126 1.14297 1.47167 0.86806 0.82442 0.81286 0.78334 1.20692 1.21630 1.20441 1.20330 0.95644 0.90011 0.86583 1.22340 0.98990 1.00520 0.99775 1.19409 1.10390 0.95177 0.91264 1.23548 0.98987 0.89950 0.99904 1.77130 1.25755 1.23844 0.87400 1.46082 1.59525 1.08244 1.06542 0.72981 1.22124 1.01526 0.84038 1.00598 0.92742 0.92186 0.95428 0.95261 0.91918 0.92138 0.92375 0.93350 0.93316 0.93382 0.92087 0.81171 0.81250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.35 60.06 0.50 0.75 16 2 N -0.51 -9.18 4.61 -224.17 -1.03 -10.21 16 3 C 0.03 0.52 6.53 -1.90 -0.01 0.51 16 4 C -0.09 -2.11 5.82 -24.87 -0.14 -2.25 16 5 C 0.06 1.32 2.49 -90.41 -0.22 1.10 16 6 H 0.03 0.88 7.69 -51.92 -0.40 0.48 16 7 C -0.50 -13.07 7.66 -34.44 -0.26 -13.33 16 8 H 0.07 1.90 4.56 -52.49 -0.24 1.66 16 9 C 0.06 1.66 5.35 -17.82 -0.10 1.57 16 10 N -0.90 -25.52 12.70 55.43 0.70 -24.82 16 11 Si 0.88 21.97 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.16 3.22 0.84 -131.45 -0.11 3.11 16 16 C -0.16 -2.72 6.58 37.16 0.24 -2.48 16 17 C -0.15 -2.96 2.83 -105.05 -0.30 -3.26 16 18 C 0.06 1.24 10.24 -17.37 -0.18 1.06 16 19 N -0.32 -6.19 12.70 30.62 0.39 -5.80 16 20 N -0.50 -8.41 7.36 30.45 0.22 -8.19 16 21 H 0.43 5.65 8.96 -182.61 -1.64 4.01 16 22 C 0.06 1.13 10.92 -17.22 -0.19 0.94 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 25 H 0.03 0.40 6.17 -51.93 -0.32 0.08 16 26 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.47 7.86 -51.93 -0.41 1.07 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 0.82 7.60 -51.93 -0.39 0.42 16 32 H 0.05 0.75 6.77 -51.93 -0.35 0.39 16 33 H 0.06 1.05 7.46 -51.93 -0.39 0.66 16 34 H 0.17 3.07 7.56 -52.49 -0.40 2.68 16 35 H 0.17 2.85 7.95 -52.49 -0.42 2.43 16 LS Contribution 277.05 15.07 4.18 4.18 Total: -1.00 -29.57 277.05 -7.51 -37.08 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.18 Total: 3.11 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.77 Total: -12.28 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.28 Total: -49.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.57 -7.51 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260410463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.103 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds