Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48536 * 110.99936 * 2 1 4 4 C 1.54934 * 103.38126 * 159.80763 * 3 2 1 5 5 C 1.54599 * 102.91699 * 322.50765 * 4 3 2 6 6 H 1.09009 * 110.30733 * 262.93549 * 5 4 3 7 7 C 1.50700 * 110.31159 * 140.87593 * 5 4 3 8 8 H 1.07997 * 119.99740 * 245.39167 * 7 5 4 9 9 C 1.37877 * 120.00231 * 65.38350 * 7 5 4 10 10 N 1.31514 * 119.99826 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 119.99997 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47248 * 60.00139 * 11 9 7 13 13 H 1.48506 * 109.47189 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47256 * 300.00002 * 11 9 7 15 15 C 1.48313 * 111.20203 * 117.25831 * 2 1 3 16 16 C 1.53007 * 110.04582 * 333.68088 * 15 2 1 17 17 C 1.50697 * 109.90245 * 94.84746 * 15 2 1 18 18 C 1.39864 * 126.04558 * 200.94993 * 17 15 2 19 19 N 1.30842 * 108.20639 * 179.97438 * 18 17 15 20 20 N 1.40087 * 108.20285 * 0.02562 * 19 18 17 21 21 H 0.96996 * 126.03685 * 179.97438 * 20 19 18 22 22 C 1.34949 * 107.92609 * 359.75710 * 20 19 18 23 23 H 1.08997 * 109.47943 * 59.87169 * 1 2 3 24 24 H 1.09002 * 109.47040 * 179.87241 * 1 2 3 25 25 H 1.09000 * 109.47106 * 299.86753 * 1 2 3 26 26 H 1.09005 * 110.66356 * 41.28808 * 3 2 1 27 27 H 1.09004 * 110.66964 * 278.33159 * 3 2 1 28 28 H 1.08995 * 110.72489 * 80.85676 * 4 3 2 29 29 H 1.08996 * 110.72621 * 203.97189 * 4 3 2 30 30 H 0.97005 * 120.00019 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.46939 * 302.26964 * 16 15 2 32 32 H 1.09002 * 109.47053 * 62.26580 * 16 15 2 33 33 H 1.09000 * 109.47155 * 182.26745 * 16 15 2 34 34 H 1.08001 * 125.89634 * 359.97438 * 18 17 15 35 35 H 1.07998 * 126.12950 * 180.24412 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2145 0.5203 5 6 3.3037 0.1106 1.5926 6 1 3.2219 0.5552 2.5845 7 6 4.4790 -0.8312 1.5381 8 1 4.3317 -1.8624 1.2531 9 6 5.7421 -0.3762 1.8517 10 7 5.9213 0.8795 2.1991 11 14 7.1989 -1.5435 1.7834 12 1 7.3418 -2.0767 0.4048 13 1 8.4359 -0.8141 2.1621 14 1 6.9775 -2.6673 2.7283 15 6 2.0053 -0.6333 1.2292 16 6 0.9938 -0.5041 2.3699 17 6 2.3025 -2.0876 0.9692 18 6 2.4200 -3.0896 1.9379 19 7 2.6809 -4.2181 1.3293 20 7 2.7384 -3.9693 -0.0481 21 1 2.9162 -4.6258 -0.7396 22 6 2.4979 -2.6559 -0.2433 23 1 -0.3635 0.5158 -0.8888 24 1 -0.3633 -1.0277 -0.0023 25 1 -0.3633 0.5118 0.8912 26 1 1.4236 2.0205 0.6730 27 1 2.0012 1.7989 -1.0091 28 1 4.1119 0.8874 -0.2819 29 1 3.8136 2.1414 0.9641 30 1 6.8101 1.1997 2.4194 31 1 0.7693 0.5490 2.5389 32 1 0.0782 -1.0329 2.1052 33 1 1.4135 -0.9365 3.2783 34 1 2.3137 -2.9550 3.0043 35 1 2.4687 -2.1486 -1.1963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260410463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = 71.086312 kcal Electronic energy + Delta-G solvation = -17701.818051 eV Core-core repulsion = 15122.020946 eV Total energy + Delta-G solvation = -2579.797105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.10122 -39.86461 -35.03998 -33.18609 -32.30575 -31.69715 -29.59664 -27.94086 -26.06056 -24.87182 -22.71213 -21.88344 -21.52618 -19.63705 -18.61061 -17.57187 -16.65006 -16.27122 -16.08979 -15.25336 -15.08923 -14.79675 -14.49648 -13.84403 -13.63995 -13.53249 -13.36041 -12.99649 -12.70435 -12.58394 -12.47220 -12.37495 -12.12880 -11.88105 -11.43810 -11.30193 -10.88618 -10.65610 -10.38199 -10.24646 -9.09448 -8.84022 -8.01767 -6.02227 1.28180 1.38263 1.40067 1.46260 2.21561 2.33984 2.48357 3.28767 3.34837 4.05544 4.28426 4.33838 4.43393 4.49833 4.63103 4.68497 4.75952 4.83044 4.90211 4.96134 5.08063 5.12854 5.21269 5.30083 5.31970 5.51061 5.59219 5.77272 5.81430 5.95355 6.04129 6.37314 6.48367 6.59013 6.73760 7.01637 7.07635 7.62941 9.08688 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.013269 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.329946 B = 2109.641659 C = 2980.151341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.516 5.516 3 C 0.041 3.959 4 C -0.088 4.088 5 C 0.049 3.951 6 H 0.001 0.999 7 C -0.491 4.491 8 H 0.070 0.930 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.930 3.070 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.170 3.830 16 C -0.152 4.152 17 C -0.173 4.173 18 C 0.049 3.951 19 N -0.335 5.335 20 N -0.481 5.481 21 H 0.445 0.555 22 C 0.069 3.931 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.176 0.824 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 -3.028 -5.169 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.087 4.087 4 C -0.127 4.127 5 C 0.030 3.970 6 H 0.020 0.980 7 C -0.529 4.529 8 H 0.088 0.912 9 C -0.185 4.185 10 N -0.566 5.566 11 Si 0.759 3.241 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.080 3.920 16 C -0.211 4.211 17 C -0.185 4.185 18 C -0.137 4.137 19 N -0.159 5.159 20 N -0.192 5.192 21 H 0.290 0.710 22 C -0.077 4.077 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.193 0.807 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.036 -4.428 -5.440 12.245 hybrid contribution 1.088 0.722 0.550 1.417 sum -8.948 -3.706 -4.890 10.849 Atomic orbital electron populations 1.22543 0.87615 1.01942 1.01017 1.64737 1.08328 1.14343 1.36492 1.23200 0.95252 0.89809 1.00425 1.22197 0.94098 0.98267 0.98168 1.19475 0.91683 0.92610 0.93223 0.98044 1.21769 0.91732 0.97003 1.42418 0.91186 1.25553 1.00846 0.95797 0.96269 1.70072 1.22163 1.15535 1.48842 0.86044 0.80348 0.79655 0.78086 1.20459 1.21549 1.20713 1.20097 0.94135 0.89702 0.88093 1.22270 0.99203 1.00894 0.98687 1.19521 1.11833 0.95204 0.91902 1.23733 0.99320 0.90146 1.00469 1.77084 1.26279 1.24018 0.88505 1.46112 1.58305 1.08463 1.06290 0.70963 1.22369 1.00224 0.84324 1.00803 0.90636 0.91524 0.94820 0.94206 0.89821 0.94555 0.94704 0.93757 0.93149 0.91236 0.92772 0.80654 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.35 127.69 1.07 1.51 16 2 N -0.52 -17.10 4.61 -863.14 -3.98 -21.08 16 3 C 0.04 1.42 6.53 86.65 0.57 1.98 16 4 C -0.09 -4.00 5.82 31.80 0.19 -3.82 16 5 C 0.05 2.34 2.49 -10.66 -0.03 2.32 16 6 H 0.00 0.08 7.69 -2.38 -0.02 0.06 16 7 C -0.49 -25.97 7.66 25.60 0.20 -25.77 16 8 H 0.07 3.69 4.56 -2.91 -0.01 3.68 16 9 C 0.01 0.69 5.35 84.65 0.45 1.14 16 10 N -0.92 -53.90 12.70 21.45 0.27 -53.63 16 11 Si 0.93 45.38 29.54 68.60 2.03 47.40 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 15 C 0.17 6.42 0.84 2.84 0.00 6.42 16 16 C -0.15 -5.00 6.58 71.98 0.47 -4.53 16 17 C -0.17 -6.50 2.83 -20.14 -0.06 -6.56 16 18 C 0.05 1.88 10.24 85.23 0.87 2.75 16 19 N -0.34 -12.49 12.70 -57.02 -0.72 -13.22 16 20 N -0.48 -15.23 7.36 -57.58 -0.42 -15.65 16 21 H 0.45 10.57 8.96 -213.33 -1.91 8.66 16 22 C 0.07 2.35 10.92 83.54 0.91 3.27 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.66 7.89 -2.39 -0.02 1.64 16 25 H 0.03 0.84 6.17 -2.39 -0.01 0.83 16 26 H 0.04 1.31 8.00 -2.38 -0.02 1.29 16 27 H 0.08 2.57 8.14 -2.38 -0.02 2.56 16 28 H 0.04 1.78 7.86 -2.39 -0.02 1.76 16 29 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 31 H 0.05 1.61 7.60 -2.39 -0.02 1.59 16 32 H 0.07 1.97 6.77 -2.39 -0.02 1.96 16 33 H 0.05 1.83 7.46 -2.39 -0.02 1.81 16 34 H 0.18 6.25 7.56 -2.91 -0.02 6.23 16 35 H 0.19 5.66 7.95 -2.91 -0.02 5.63 16 Total: -1.00 -62.82 277.05 1.00 -61.83 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.82 Total: 15.64 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.64 Total: -21.28 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.85 Total: -103.59 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -62.82 1.00 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260410463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.912 kcal (2) G-P(sol) polarization free energy of solvation -62.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds