Wall clock time and date at job start Mon Mar 30 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48527 * 110.99757 * 2 1 4 4 C 1.54942 * 103.22537 * 159.71909 * 3 2 1 5 5 C 1.54595 * 102.91946 * 322.58531 * 4 3 2 6 6 H 1.09002 * 110.30697 * 140.87121 * 5 4 3 7 7 C 1.50698 * 110.30962 * 263.03962 * 5 4 3 8 8 H 1.07990 * 119.99981 * 115.71951 * 7 5 4 9 9 C 1.37879 * 119.99705 * 295.71720 * 7 5 4 10 10 N 1.31519 * 120.00446 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 119.99930 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46708 * 60.00095 * 11 9 7 13 13 H 1.48502 * 109.47190 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46831 * 300.00414 * 11 9 7 15 15 C 1.47905 * 110.99687 * 117.39807 * 2 1 3 16 16 C 1.52996 * 110.08178 * 333.59786 * 15 2 1 17 17 C 1.50700 * 109.91825 * 94.80348 * 15 2 1 18 18 C 1.39870 * 126.03869 * 147.56430 * 17 15 2 19 19 N 1.30835 * 108.20296 * 179.97438 * 18 17 15 20 20 N 1.40091 * 108.20432 * 0.02562 * 19 18 17 21 21 H 0.97001 * 126.03420 * 179.97438 * 20 19 18 22 22 C 1.34948 * 107.92562 * 0.26140 * 20 19 18 23 23 H 1.08996 * 109.47615 * 302.60369 * 1 2 3 24 24 H 1.09003 * 109.47151 * 62.60749 * 1 2 3 25 25 H 1.08999 * 109.47500 * 182.60373 * 1 2 3 26 26 H 1.08996 * 110.67192 * 41.28596 * 3 2 1 27 27 H 1.08997 * 110.66692 * 278.15068 * 3 2 1 28 28 H 1.09000 * 110.72823 * 204.22580 * 4 3 2 29 29 H 1.09005 * 110.87537 * 81.01234 * 4 3 2 30 30 H 0.96997 * 120.00214 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47174 * 181.91563 * 16 15 2 32 32 H 1.09003 * 109.47489 * 301.91140 * 16 15 2 33 33 H 1.08997 * 109.47357 * 61.91252 * 16 15 2 34 34 H 1.08004 * 125.89708 * 359.97438 * 18 17 15 35 35 H 1.07999 * 126.12841 * 179.73268 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2981 0.1053 1.5931 6 1 4.1468 -0.5775 1.5541 7 6 3.1811 0.7181 2.9649 8 1 2.2709 0.5987 3.5337 9 6 4.2361 1.4311 3.4937 10 7 5.3444 1.5769 2.8008 11 14 4.0908 2.1913 5.1939 12 1 3.8428 1.1223 6.1944 13 1 5.3519 2.9003 5.5286 14 1 2.9618 3.1559 5.2099 15 6 1.9990 -0.6354 1.2260 16 6 0.9856 -0.5060 2.3649 17 6 2.2937 -2.0899 0.9641 18 6 3.3151 -2.8417 1.5538 19 7 3.2535 -4.0590 1.0781 20 7 2.1895 -4.1202 0.1688 21 1 1.9134 -4.9020 -0.3346 22 6 1.6207 -2.8977 0.1122 23 1 -0.3634 0.5537 0.8657 24 1 -0.3633 0.4728 -0.9125 25 1 -0.3634 -1.0266 0.0467 26 1 1.4237 2.0205 0.6729 27 1 2.0041 1.7976 -1.0095 28 1 3.8123 2.1351 0.9717 29 1 4.1140 0.8847 -0.2771 30 1 6.0867 2.0782 3.1730 31 1 1.3997 -0.9471 3.2716 32 1 0.7682 0.5477 2.5400 33 1 0.0668 -1.0265 2.0946 34 1 4.0311 -2.4799 2.2769 35 1 0.7775 -2.6156 -0.5008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260410487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:52 Heat of formation + Delta-G solvation = 93.431291 kcal Electronic energy + Delta-G solvation = -17537.303638 eV Core-core repulsion = 14958.475484 eV Total energy + Delta-G solvation = -2578.828154 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74887 -38.48812 -33.19790 -31.65164 -30.78853 -30.30213 -28.44088 -25.59223 -24.70756 -23.63838 -21.57627 -20.43831 -19.59156 -18.38520 -16.78834 -15.87774 -14.99804 -14.85855 -14.13835 -14.00393 -13.79634 -13.35341 -12.96725 -12.39962 -12.23677 -12.16357 -11.72756 -11.31999 -11.03679 -10.82139 -10.71669 -10.47660 -10.21401 -9.94968 -9.85989 -9.74853 -9.26923 -9.04854 -8.60935 -8.31043 -7.84326 -7.59991 -5.97320 -4.00810 2.45982 3.32726 3.38368 3.39918 3.42218 3.47173 4.45648 4.83079 5.33603 5.44041 5.46312 5.69567 5.81847 5.92349 6.10906 6.17589 6.25222 6.28115 6.29074 6.38677 6.50364 6.57914 6.78569 6.82242 7.02077 7.21582 7.28609 7.37127 7.70807 7.72646 7.77685 7.90103 7.94810 8.01391 8.24178 8.50753 9.01416 9.63686 11.11022 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.009835 C = 0.008428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.399607 B = 2846.314693 C = 3321.375974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.039 3.961 4 C -0.100 4.100 5 C 0.056 3.944 6 H 0.040 0.960 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.064 3.936 10 N -0.887 5.887 11 Si 0.884 3.116 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.165 3.835 16 C -0.139 4.139 17 C -0.183 4.183 18 C 0.069 3.931 19 N -0.314 5.314 20 N -0.494 5.494 21 H 0.430 0.570 22 C 0.053 3.947 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.186 0.814 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -4.758 -4.957 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.240 5.240 3 C -0.088 4.088 4 C -0.139 4.139 5 C 0.037 3.963 6 H 0.058 0.942 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.712 3.288 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.205 1.205 15 C 0.075 3.925 16 C -0.197 4.197 17 C -0.195 4.195 18 C -0.117 4.117 19 N -0.137 5.137 20 N -0.202 5.202 21 H 0.272 0.728 22 C -0.093 4.093 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.203 0.797 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.503 -6.094 -5.384 11.064 hybrid contribution -0.859 1.408 1.282 2.089 sum -8.362 -4.686 -4.102 10.426 Atomic orbital electron populations 1.22513 0.90338 1.00636 0.99982 1.64763 1.06088 1.15669 1.37479 1.23173 0.98100 0.88825 0.98721 1.22402 0.91961 1.02207 0.97338 1.19527 0.90418 0.92553 0.93765 0.94203 1.21531 1.00614 1.32964 1.00727 0.91266 1.24975 0.95440 0.96391 0.97001 1.69976 1.04236 1.41121 1.37185 0.86793 0.77186 0.79507 0.85304 1.20309 1.21450 1.20490 1.20151 0.97098 0.88356 0.86868 1.22284 0.96827 1.01023 0.99584 1.20092 0.99609 0.96980 1.02809 1.23968 0.98420 0.89950 0.99395 1.77241 1.06718 1.21308 1.08398 1.46199 1.26663 1.10506 1.36860 0.72814 1.22236 1.00313 0.85436 1.01360 0.95066 0.92779 0.92516 0.94357 0.92345 0.90347 0.94451 0.93075 0.91655 0.92210 0.95330 0.79672 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 8.09 60.06 0.49 0.70 16 2 N -0.52 -9.53 4.84 -224.49 -1.09 -10.62 16 3 C 0.04 0.77 6.55 -1.90 -0.01 0.76 16 4 C -0.10 -2.32 6.16 -24.87 -0.15 -2.47 16 5 C 0.06 1.34 2.33 -90.42 -0.21 1.13 16 6 H 0.04 1.04 6.21 -51.93 -0.32 0.72 16 7 C -0.52 -13.24 7.62 -34.44 -0.26 -13.50 16 8 H 0.07 1.72 4.70 -52.49 -0.25 1.48 16 9 C 0.06 1.69 5.09 -17.82 -0.09 1.59 16 10 N -0.89 -24.61 12.15 55.43 0.67 -23.94 16 11 Si 0.88 20.66 29.54 -169.99 -5.02 15.64 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.17 3.30 0.83 -131.68 -0.11 3.19 16 16 C -0.14 -2.66 5.66 37.16 0.21 -2.45 16 17 C -0.18 -3.48 4.91 -105.05 -0.52 -3.99 16 18 C 0.07 1.36 10.77 -17.37 -0.19 1.18 16 19 N -0.31 -5.78 12.70 30.62 0.39 -5.39 16 20 N -0.49 -7.41 7.36 30.45 0.22 -7.19 16 21 H 0.43 4.70 8.96 -182.60 -1.64 3.07 16 22 C 0.05 0.84 11.13 -17.22 -0.19 0.64 16 23 H 0.03 0.48 6.29 -51.93 -0.33 0.16 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.77 6.26 -51.93 -0.33 0.45 16 26 H 0.04 0.76 7.96 -51.93 -0.41 0.35 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.99 6.77 -51.93 -0.35 1.64 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.06 1.32 7.11 -51.93 -0.37 0.95 16 32 H 0.06 1.20 6.60 -51.93 -0.34 0.85 16 33 H 0.03 0.48 6.67 -51.93 -0.35 0.13 16 34 H 0.19 3.71 7.37 -52.48 -0.39 3.33 16 35 H 0.17 2.21 6.72 -52.49 -0.35 1.86 16 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -28.58 271.42 -7.59 -36.18 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.82 Total: 4.44 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.04 Total: -13.22 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.20 Total: -47.13 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.58 -7.59 -36.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260410487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.607 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds