Wall clock time and date at job start Mon Mar 30 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48527 * 110.99757 * 2 1 4 4 C 1.54942 * 103.22537 * 159.71909 * 3 2 1 5 5 C 1.54595 * 102.91946 * 322.58531 * 4 3 2 6 6 H 1.09002 * 110.30697 * 140.87121 * 5 4 3 7 7 C 1.50698 * 110.30962 * 263.03962 * 5 4 3 8 8 H 1.07990 * 119.99981 * 115.71951 * 7 5 4 9 9 C 1.37879 * 119.99705 * 295.71720 * 7 5 4 10 10 N 1.31519 * 120.00446 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 119.99930 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46708 * 60.00095 * 11 9 7 13 13 H 1.48502 * 109.47190 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46831 * 300.00414 * 11 9 7 15 15 C 1.47905 * 110.99687 * 117.39807 * 2 1 3 16 16 C 1.52996 * 110.08178 * 333.59786 * 15 2 1 17 17 C 1.50700 * 109.91825 * 94.80348 * 15 2 1 18 18 C 1.39870 * 126.03869 * 147.56430 * 17 15 2 19 19 N 1.30835 * 108.20296 * 179.97438 * 18 17 15 20 20 N 1.40091 * 108.20432 * 0.02562 * 19 18 17 21 21 H 0.97001 * 126.03420 * 179.97438 * 20 19 18 22 22 C 1.34948 * 107.92562 * 0.26140 * 20 19 18 23 23 H 1.08996 * 109.47615 * 302.60369 * 1 2 3 24 24 H 1.09003 * 109.47151 * 62.60749 * 1 2 3 25 25 H 1.08999 * 109.47500 * 182.60373 * 1 2 3 26 26 H 1.08996 * 110.67192 * 41.28596 * 3 2 1 27 27 H 1.08997 * 110.66692 * 278.15068 * 3 2 1 28 28 H 1.09000 * 110.72823 * 204.22580 * 4 3 2 29 29 H 1.09005 * 110.87537 * 81.01234 * 4 3 2 30 30 H 0.96997 * 120.00214 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47174 * 181.91563 * 16 15 2 32 32 H 1.09003 * 109.47489 * 301.91140 * 16 15 2 33 33 H 1.08997 * 109.47357 * 61.91252 * 16 15 2 34 34 H 1.08004 * 125.89708 * 359.97438 * 18 17 15 35 35 H 1.07999 * 126.12841 * 179.73268 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2981 0.1053 1.5931 6 1 4.1468 -0.5775 1.5541 7 6 3.1811 0.7181 2.9649 8 1 2.2709 0.5987 3.5337 9 6 4.2361 1.4311 3.4937 10 7 5.3444 1.5769 2.8008 11 14 4.0908 2.1913 5.1939 12 1 3.8428 1.1223 6.1944 13 1 5.3519 2.9003 5.5286 14 1 2.9618 3.1559 5.2099 15 6 1.9990 -0.6354 1.2260 16 6 0.9856 -0.5060 2.3649 17 6 2.2937 -2.0899 0.9641 18 6 3.3151 -2.8417 1.5538 19 7 3.2535 -4.0590 1.0781 20 7 2.1895 -4.1202 0.1688 21 1 1.9134 -4.9020 -0.3346 22 6 1.6207 -2.8977 0.1122 23 1 -0.3634 0.5537 0.8657 24 1 -0.3633 0.4728 -0.9125 25 1 -0.3634 -1.0266 0.0467 26 1 1.4237 2.0205 0.6729 27 1 2.0041 1.7976 -1.0095 28 1 3.8123 2.1351 0.9717 29 1 4.1140 0.8847 -0.2771 30 1 6.0867 2.0782 3.1730 31 1 1.3997 -0.9471 3.2716 32 1 0.7682 0.5477 2.5400 33 1 0.0668 -1.0265 2.0946 34 1 4.0311 -2.4799 2.2769 35 1 0.7775 -2.6156 -0.5008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260410487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:52 Heat of formation + Delta-G solvation = 73.783919 kcal Electronic energy + Delta-G solvation = -17538.155612 eV Core-core repulsion = 14958.475484 eV Total energy + Delta-G solvation = -2579.680128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15090 -40.03594 -35.05780 -33.15291 -32.43680 -31.81083 -29.93630 -27.29602 -26.23029 -25.33022 -23.01609 -21.92123 -21.30276 -19.79968 -18.30374 -17.76233 -16.78336 -16.35530 -15.80071 -15.44386 -15.19095 -14.87089 -14.44899 -14.04257 -13.93334 -13.63344 -13.31682 -12.91686 -12.73789 -12.58928 -12.30251 -12.07569 -11.88478 -11.64000 -11.59649 -11.34028 -10.97399 -10.58241 -10.39118 -10.32440 -9.26302 -9.04074 -8.01400 -6.09087 1.11861 1.44769 1.45782 1.51912 1.99822 2.22825 2.49454 3.29823 3.37684 3.97627 4.20853 4.29893 4.38056 4.53300 4.64804 4.71177 4.78636 4.84288 4.90371 4.93121 5.08339 5.13901 5.17461 5.27428 5.40614 5.54880 5.60125 5.74262 5.78656 5.96458 6.04314 6.19501 6.47350 6.56775 6.62763 6.88570 7.01995 7.58097 9.06689 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.009835 C = 0.008428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.399607 B = 2846.314693 C = 3321.375974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.516 5.516 3 C 0.050 3.950 4 C -0.100 4.100 5 C 0.050 3.950 6 H 0.004 0.996 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.014 3.986 10 N -0.920 5.920 11 Si 0.940 3.060 12 H -0.273 1.273 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.173 3.827 16 C -0.130 4.130 17 C -0.215 4.215 18 C 0.048 3.952 19 N -0.331 5.331 20 N -0.471 5.471 21 H 0.451 0.549 22 C 0.081 3.919 23 H 0.027 0.973 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.025 0.975 30 H 0.256 0.744 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.164 0.836 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 -5.553 -5.997 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.239 5.239 3 C -0.078 4.078 4 C -0.138 4.138 5 C 0.031 3.969 6 H 0.022 0.978 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.185 4.185 10 N -0.560 5.560 11 Si 0.767 3.233 12 H -0.199 1.199 13 H -0.218 1.218 14 H -0.197 1.197 15 C 0.083 3.917 16 C -0.189 4.189 17 C -0.227 4.227 18 C -0.137 4.137 19 N -0.154 5.154 20 N -0.182 5.182 21 H 0.297 0.703 22 C -0.067 4.067 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.181 0.819 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.262 -6.918 -6.426 13.945 hybrid contribution -0.022 1.583 1.542 2.210 sum -10.283 -5.335 -4.885 12.572 Atomic orbital electron populations 1.22652 0.87639 1.02389 1.01052 1.64779 1.08519 1.14339 1.36254 1.23050 0.95262 0.89856 0.99612 1.22242 0.94400 1.00428 0.96763 1.19467 0.91627 0.92434 0.93368 0.97766 1.21894 1.00439 1.31914 1.01620 0.90771 1.25675 0.95366 0.97259 1.00158 1.70117 1.04899 1.42307 1.38670 0.85887 0.77005 0.78790 0.81606 1.19874 1.21789 1.19736 1.19879 0.95181 0.88787 0.87851 1.22166 0.97777 1.00370 0.98558 1.20060 1.00877 0.96866 1.04867 1.23765 0.99012 0.90880 1.00067 1.77179 1.08155 1.20678 1.09437 1.46208 1.25127 1.11308 1.35544 0.70284 1.22598 0.99891 0.84647 0.99547 0.95394 0.90508 0.90248 0.94726 0.90071 0.93498 0.95647 0.93533 0.93558 0.93437 0.92296 0.81897 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 8.09 127.69 1.03 1.31 16 2 N -0.52 -17.64 4.84 -864.17 -4.18 -21.82 16 3 C 0.05 1.88 6.55 86.65 0.57 2.45 16 4 C -0.10 -4.71 6.16 31.80 0.20 -4.52 16 5 C 0.05 2.45 2.33 -10.66 -0.02 2.42 16 6 H 0.00 0.23 6.21 -2.39 -0.01 0.22 16 7 C -0.52 -27.17 7.62 25.60 0.20 -26.97 16 8 H 0.07 3.73 4.70 -2.92 -0.01 3.72 16 9 C 0.01 0.74 5.09 84.65 0.43 1.17 16 10 N -0.92 -53.26 12.15 21.45 0.26 -53.00 16 11 Si 0.94 43.24 29.54 68.60 2.03 45.26 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C 0.17 6.75 0.83 2.92 0.00 6.75 16 16 C -0.13 -4.79 5.66 71.98 0.41 -4.38 16 17 C -0.21 -7.86 4.91 -20.14 -0.10 -7.96 16 18 C 0.05 1.93 10.77 85.24 0.92 2.85 16 19 N -0.33 -11.86 12.70 -57.02 -0.72 -12.59 16 20 N -0.47 -12.66 7.36 -57.59 -0.42 -13.08 16 21 H 0.45 8.08 8.96 -213.33 -1.91 6.17 16 22 C 0.08 2.27 11.13 83.54 0.93 3.20 16 23 H 0.03 0.75 6.29 -2.39 -0.02 0.74 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 1.70 6.26 -2.39 -0.01 1.69 16 26 H 0.03 1.33 7.96 -2.39 -0.02 1.31 16 27 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.05 2.48 6.77 -2.39 -0.02 2.46 16 29 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.05 1.85 7.11 -2.39 -0.02 1.83 16 32 H 0.05 1.83 6.60 -2.39 -0.02 1.82 16 33 H 0.06 1.78 6.67 -2.39 -0.02 1.77 16 34 H 0.16 7.05 7.37 -2.91 -0.02 7.02 16 35 H 0.20 4.17 6.72 -2.91 -0.02 4.15 16 Total: -1.00 -63.41 271.42 0.71 -62.70 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.80 Total: 16.19 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.56 Total: -23.67 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -5.07 Total: -100.49 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -63.41 0.71 -62.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260410487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.485 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds