Wall clock time and date at job start Mon Mar 30 2020 03:37:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35322 * 126.12184 * 2 1
4 4 C 1.50693 * 126.03916 * 359.97438 * 3 2 1
5 5 C 1.50696 * 109.47459 * 84.99980 * 4 3 2
6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3
8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5
11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5
12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5
13 13 C 1.39866 * 107.91923 * 180.23770 * 3 2 1
14 14 N 1.30840 * 108.20205 * 359.56087 * 13 3 2
15 15 N 1.34941 * 126.13284 * 179.97438 * 2 1 3
16 16 C 1.46505 * 126.03708 * 0.02562 * 15 2 1
17 17 H 1.09006 * 109.87980 * 15.41846 * 16 15 2
18 18 C 1.54320 * 109.88677 * 254.22029 * 16 15 2
19 19 C 1.55133 * 103.01975 * 218.30689 * 18 16 15
20 20 C 1.54908 * 101.65225 * 35.65347 * 19 18 16
21 21 N 1.47438 * 109.89079 * 136.44854 * 16 15 2
22 22 H 1.09004 * 109.46904 * 90.03002 * 1 2 3
23 23 H 1.09003 * 109.46816 * 210.01864 * 1 2 3
24 24 H 1.08996 * 109.47987 * 330.02248 * 1 2 3
25 25 H 1.09004 * 109.47104 * 324.99227 * 4 3 2
26 26 H 1.09010 * 109.46918 * 204.99745 * 4 3 2
27 27 H 0.97000 * 119.99462 * 359.97438 * 8 7 5
28 28 H 1.07997 * 125.90238 * 179.73481 * 13 3 2
29 29 H 1.09000 * 110.70920 * 336.69219 * 18 16 15
30 30 H 1.09004 * 110.70458 * 99.92351 * 18 16 15
31 31 H 1.09005 * 110.99374 * 277.56648 * 19 18 16
32 32 H 1.09003 * 111.02556 * 153.76151 * 19 18 16
33 33 H 1.09005 * 110.37470 * 204.10076 * 20 19 18
34 34 H 1.09003 * 110.37359 * 81.76244 * 20 19 18
35 35 H 1.00892 * 111.00356 * 240.68021 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3047 1.0931 0.0000
4 6 1.8431 2.5276 -0.0005
5 6 1.5708 2.9683 1.4146
6 1 1.7169 2.2785 2.2326
7 6 1.1340 4.2519 1.6649
8 7 0.9555 5.0918 0.6688
9 14 0.7958 4.7979 3.4190
10 1 -0.6214 4.5149 3.7610
11 1 1.6865 4.0576 4.3485
12 1 1.0531 6.2552 3.5422
13 6 3.6334 0.6562 -0.0055
14 7 3.6334 -0.6522 0.0008
15 7 2.3027 -1.0899 0.0005
16 6 1.8541 -2.4845 0.0006
17 1 0.7999 -2.5349 -0.2723
18 6 2.0685 -3.1048 1.3973
19 6 2.5297 -4.5497 1.0709
20 6 3.3734 -4.3272 -0.2090
21 7 2.6574 -3.2699 -0.9542
22 1 -0.3633 -0.0005 -1.0277
23 1 -0.3633 -0.8899 0.5141
24 1 -0.3635 0.8901 0.5134
25 1 0.9307 2.6154 -0.5905
26 1 2.6186 3.1587 -0.4347
27 1 1.1315 4.8083 -0.2420
28 1 4.5082 1.2894 -0.0110
29 1 2.8436 -2.5669 1.9431
30 1 1.1358 -3.1161 1.9613
31 1 1.6755 -5.1958 0.8681
32 1 3.1415 -4.9562 1.8762
33 1 3.4177 -5.2432 -0.7983
34 1 4.3779 -3.9938 0.0518
35 1 2.0749 -3.6674 -1.6757
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260414649.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:24
Heat of formation + Delta-G solvation = 69.275727 kcal
Electronic energy + Delta-G solvation = -16596.929458 eV
Core-core repulsion = 14017.053840 eV
Total energy + Delta-G solvation = -2579.875618 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.60592 -38.33395 -33.67579 -32.25162 -31.29721 -30.35454 -28.51966 -26.85931
-25.24059 -22.69169 -22.09474 -21.43908 -19.34788 -18.67029 -16.87892 -16.59213
-16.11944 -15.19332 -14.35824 -13.75917 -13.69298 -13.41444 -13.12217 -12.80630
-12.71234 -12.35617 -12.05730 -11.74326 -11.54842 -11.49930 -11.39428 -11.10347
-11.00841 -10.60485 -10.21806 -10.05001 -9.53301 -8.85508 -8.78522 -8.47160
-8.25231 -7.22718 -6.24059 -3.94684 2.58710 3.03272 3.47349 3.52112
3.67974 3.77062 3.98606 4.42732 4.58385 4.62849 4.69597 4.83942
5.17928 5.32637 5.44738 5.48635 5.55944 5.61389 5.66219 5.77139
5.80244 5.99940 6.04936 6.38935 6.47942 6.59823 6.67805 7.00725
7.11319 7.35661 7.53215 7.67831 7.90054 8.32894 8.56959 8.58727
8.99070 9.75577 11.13209
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.040751 B = 0.005874 C = 0.005672
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.941205 B = 4765.786144 C = 4935.013546
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C 0.053 3.947
3 C -0.174 4.174
4 C 0.074 3.926
5 C -0.583 4.583
6 H 0.047 0.953
7 C 0.014 3.986
8 N -0.917 5.917
9 Si 1.069 2.931
10 H -0.289 1.289
11 H -0.290 1.290
12 H -0.285 1.285
13 C 0.034 3.966
14 N -0.289 5.289
15 N -0.370 5.370
16 C 0.328 3.672
17 H 0.091 0.909
18 C -0.146 4.146
19 C -0.152 4.152
20 C 0.057 3.943
21 N -0.679 5.679
22 H 0.065 0.935
23 H 0.052 0.948
24 H 0.095 0.905
25 H 0.013 0.987
26 H 0.014 0.986
27 H 0.269 0.731
28 H 0.171 0.829
29 H 0.086 0.914
30 H 0.079 0.921
31 H 0.069 0.931
32 H 0.079 0.921
33 H 0.070 0.930
34 H 0.082 0.918
35 H 0.345 0.655
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.299 -18.338 -0.999 18.368
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.071 4.071
3 C -0.185 4.185
4 C 0.036 3.964
5 C -0.622 4.622
6 H 0.065 0.935
7 C -0.189 4.189
8 N -0.554 5.554
9 Si 0.898 3.102
10 H -0.216 1.216
11 H -0.216 1.216
12 H -0.211 1.211
13 C -0.151 4.151
14 N -0.110 5.110
15 N -0.157 5.157
16 C 0.134 3.866
17 H 0.108 0.892
18 C -0.185 4.185
19 C -0.191 4.191
20 C -0.072 4.072
21 N -0.310 5.310
22 H 0.083 0.917
23 H 0.071 0.929
24 H 0.114 0.886
25 H 0.031 0.969
26 H 0.033 0.967
27 H 0.079 0.921
28 H 0.188 0.812
29 H 0.105 0.895
30 H 0.098 0.902
31 H 0.088 0.912
32 H 0.098 0.902
33 H 0.088 0.912
34 H 0.100 0.900
35 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 0.419 -17.800 -0.132 17.806
hybrid contribution -0.625 -1.170 -0.697 1.499
sum -0.206 -18.971 -0.830 18.990
Atomic orbital electron populations
1.20322 0.88346 1.03404 1.01964 1.20627 0.94045 0.86749 1.05719
1.20379 0.91567 0.97155 1.09389 1.17746 0.95169 0.86001 0.97441
1.22006 1.48452 0.99530 0.92219 0.93510 1.25797 0.94391 0.93218
1.05529 1.70749 1.46441 1.37606 1.00594 0.83538 0.76278 0.75954
0.74405 1.21616 1.21620 1.21069 1.23728 0.98094 0.91942 1.01384
1.77182 0.97196 1.12339 1.24243 1.48440 1.03887 1.04075 1.59315
1.21738 0.93969 0.78821 0.92047 0.89156 1.23121 1.03047 0.95813
0.96553 1.23171 1.00224 0.96337 0.99385 1.22824 0.98646 0.92791
0.92959 1.60773 1.31515 1.24979 1.13693 0.91668 0.92863 0.88610
0.96922 0.96743 0.92070 0.81155 0.89547 0.90241 0.91228 0.90238
0.91173 0.89968 0.83643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.39 9.56 36.00 0.34 -1.05 16
2 C 0.05 1.08 6.93 -82.27 -0.57 0.51 16
3 C -0.17 -4.07 5.29 -105.06 -0.56 -4.63 16
4 C 0.07 1.97 4.32 -29.04 -0.13 1.84 16
5 C -0.58 -16.77 9.09 -34.44 -0.31 -17.08 16
6 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16
7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16
8 N -0.92 -28.09 13.65 55.43 0.76 -27.33 16
9 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16
10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16
12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
13 C 0.03 0.76 11.96 -17.37 -0.21 0.55 16
14 N -0.29 -6.05 12.47 30.62 0.38 -5.67 16
15 N -0.37 -6.93 3.47 -52.63 -0.18 -7.11 16
16 C 0.33 4.55 4.12 -125.92 -0.52 4.03 16
17 H 0.09 1.07 7.07 -51.93 -0.37 0.70 16
18 C -0.15 -1.78 6.64 -24.91 -0.17 -1.94 16
19 C -0.15 -1.38 7.08 -24.60 -0.17 -1.55 16
20 C 0.06 0.58 7.57 -2.30 -0.02 0.56 16
21 N -0.68 -8.51 7.15 -107.09 -0.77 -9.27 16
22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
23 H 0.05 0.74 7.40 -51.93 -0.38 0.35 16
24 H 0.10 1.85 7.88 -51.93 -0.41 1.44 16
25 H 0.01 0.34 7.88 -51.93 -0.41 -0.07 16
26 H 0.01 0.40 8.01 -51.92 -0.42 -0.02 16
27 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16
28 H 0.17 3.40 8.06 -52.49 -0.42 2.97 16
29 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16
30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
35 H 0.35 3.42 8.91 -39.30 -0.35 3.07 16
LS Contribution 293.07 15.07 4.42 4.42
Total: -1.00 -33.52 293.07 -8.09 -41.60
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: -5.21 Total: 1.25 kcal
Atomic # 6 Polarization: -16.07 SS G_CDS: -2.40 Total: -18.47 kcal
Atomic # 7 Polarization: -49.58 SS G_CDS: 0.19 Total: -49.39 kcal
Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal
Total LS contribution 4.42 Total: 4.42 kcal
Total: -33.52 -8.09 -41.60 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260414649.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.880 kcal
(2) G-P(sol) polarization free energy of solvation -33.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.276 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds