Wall clock time and date at job start Mon Mar 30 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35322 * 126.12184 * 2 1 4 4 C 1.50693 * 126.03916 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47459 * 84.99980 * 4 3 2 6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.39866 * 107.91923 * 180.23770 * 3 2 1 14 14 N 1.30840 * 108.20205 * 359.56087 * 13 3 2 15 15 N 1.34941 * 126.13284 * 179.97438 * 2 1 3 16 16 C 1.46505 * 126.03708 * 0.02562 * 15 2 1 17 17 H 1.09006 * 109.87980 * 15.41846 * 16 15 2 18 18 C 1.54320 * 109.88677 * 254.22029 * 16 15 2 19 19 C 1.55133 * 103.01975 * 218.30689 * 18 16 15 20 20 C 1.54908 * 101.65225 * 35.65347 * 19 18 16 21 21 N 1.47438 * 109.89079 * 136.44854 * 16 15 2 22 22 H 1.09004 * 109.46904 * 90.03002 * 1 2 3 23 23 H 1.09003 * 109.46816 * 210.01864 * 1 2 3 24 24 H 1.08996 * 109.47987 * 330.02248 * 1 2 3 25 25 H 1.09004 * 109.47104 * 324.99227 * 4 3 2 26 26 H 1.09010 * 109.46918 * 204.99745 * 4 3 2 27 27 H 0.97000 * 119.99462 * 359.97438 * 8 7 5 28 28 H 1.07997 * 125.90238 * 179.73481 * 13 3 2 29 29 H 1.09000 * 110.70920 * 336.69219 * 18 16 15 30 30 H 1.09004 * 110.70458 * 99.92351 * 18 16 15 31 31 H 1.09005 * 110.99374 * 277.56648 * 19 18 16 32 32 H 1.09003 * 111.02556 * 153.76151 * 19 18 16 33 33 H 1.09005 * 110.37470 * 204.10076 * 20 19 18 34 34 H 1.09003 * 110.37359 * 81.76244 * 20 19 18 35 35 H 1.00892 * 111.00356 * 240.68021 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 1.8431 2.5276 -0.0005 5 6 1.5708 2.9683 1.4146 6 1 1.7169 2.2785 2.2326 7 6 1.1340 4.2519 1.6649 8 7 0.9555 5.0918 0.6688 9 14 0.7958 4.7979 3.4190 10 1 -0.6214 4.5149 3.7610 11 1 1.6865 4.0576 4.3485 12 1 1.0531 6.2552 3.5422 13 6 3.6334 0.6562 -0.0055 14 7 3.6334 -0.6522 0.0008 15 7 2.3027 -1.0899 0.0005 16 6 1.8541 -2.4845 0.0006 17 1 0.7999 -2.5349 -0.2723 18 6 2.0685 -3.1048 1.3973 19 6 2.5297 -4.5497 1.0709 20 6 3.3734 -4.3272 -0.2090 21 7 2.6574 -3.2699 -0.9542 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8899 0.5141 24 1 -0.3635 0.8901 0.5134 25 1 0.9307 2.6154 -0.5905 26 1 2.6186 3.1587 -0.4347 27 1 1.1315 4.8083 -0.2420 28 1 4.5082 1.2894 -0.0110 29 1 2.8436 -2.5669 1.9431 30 1 1.1358 -3.1161 1.9613 31 1 1.6755 -5.1958 0.8681 32 1 3.1415 -4.9562 1.8762 33 1 3.4177 -5.2432 -0.7983 34 1 4.3779 -3.9938 0.0518 35 1 2.0749 -3.6674 -1.6757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:24 Heat of formation + Delta-G solvation = 69.275727 kcal Electronic energy + Delta-G solvation = -16596.929458 eV Core-core repulsion = 14017.053840 eV Total energy + Delta-G solvation = -2579.875618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60592 -38.33395 -33.67579 -32.25162 -31.29721 -30.35454 -28.51966 -26.85931 -25.24059 -22.69169 -22.09474 -21.43908 -19.34788 -18.67029 -16.87892 -16.59213 -16.11944 -15.19332 -14.35824 -13.75917 -13.69298 -13.41444 -13.12217 -12.80630 -12.71234 -12.35617 -12.05730 -11.74326 -11.54842 -11.49930 -11.39428 -11.10347 -11.00841 -10.60485 -10.21806 -10.05001 -9.53301 -8.85508 -8.78522 -8.47160 -8.25231 -7.22718 -6.24059 -3.94684 2.58710 3.03272 3.47349 3.52112 3.67974 3.77062 3.98606 4.42732 4.58385 4.62849 4.69597 4.83942 5.17928 5.32637 5.44738 5.48635 5.55944 5.61389 5.66219 5.77139 5.80244 5.99940 6.04936 6.38935 6.47942 6.59823 6.67805 7.00725 7.11319 7.35661 7.53215 7.67831 7.90054 8.32894 8.56959 8.58727 8.99070 9.75577 11.13209 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040751 B = 0.005874 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.941205 B = 4765.786144 C = 4935.013546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.053 3.947 3 C -0.174 4.174 4 C 0.074 3.926 5 C -0.583 4.583 6 H 0.047 0.953 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.285 1.285 13 C 0.034 3.966 14 N -0.289 5.289 15 N -0.370 5.370 16 C 0.328 3.672 17 H 0.091 0.909 18 C -0.146 4.146 19 C -0.152 4.152 20 C 0.057 3.943 21 N -0.679 5.679 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.269 0.731 28 H 0.171 0.829 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -18.338 -0.999 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.185 4.185 4 C 0.036 3.964 5 C -0.622 4.622 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.554 5.554 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.151 4.151 14 N -0.110 5.110 15 N -0.157 5.157 16 C 0.134 3.866 17 H 0.108 0.892 18 C -0.185 4.185 19 C -0.191 4.191 20 C -0.072 4.072 21 N -0.310 5.310 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.188 0.812 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.419 -17.800 -0.132 17.806 hybrid contribution -0.625 -1.170 -0.697 1.499 sum -0.206 -18.971 -0.830 18.990 Atomic orbital electron populations 1.20322 0.88346 1.03404 1.01964 1.20627 0.94045 0.86749 1.05719 1.20379 0.91567 0.97155 1.09389 1.17746 0.95169 0.86001 0.97441 1.22006 1.48452 0.99530 0.92219 0.93510 1.25797 0.94391 0.93218 1.05529 1.70749 1.46441 1.37606 1.00594 0.83538 0.76278 0.75954 0.74405 1.21616 1.21620 1.21069 1.23728 0.98094 0.91942 1.01384 1.77182 0.97196 1.12339 1.24243 1.48440 1.03887 1.04075 1.59315 1.21738 0.93969 0.78821 0.92047 0.89156 1.23121 1.03047 0.95813 0.96553 1.23171 1.00224 0.96337 0.99385 1.22824 0.98646 0.92791 0.92959 1.60773 1.31515 1.24979 1.13693 0.91668 0.92863 0.88610 0.96922 0.96743 0.92070 0.81155 0.89547 0.90241 0.91228 0.90238 0.91173 0.89968 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.56 36.00 0.34 -1.05 16 2 C 0.05 1.08 6.93 -82.27 -0.57 0.51 16 3 C -0.17 -4.07 5.29 -105.06 -0.56 -4.63 16 4 C 0.07 1.97 4.32 -29.04 -0.13 1.84 16 5 C -0.58 -16.77 9.09 -34.44 -0.31 -17.08 16 6 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.92 -28.09 13.65 55.43 0.76 -27.33 16 9 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.03 0.76 11.96 -17.37 -0.21 0.55 16 14 N -0.29 -6.05 12.47 30.62 0.38 -5.67 16 15 N -0.37 -6.93 3.47 -52.63 -0.18 -7.11 16 16 C 0.33 4.55 4.12 -125.92 -0.52 4.03 16 17 H 0.09 1.07 7.07 -51.93 -0.37 0.70 16 18 C -0.15 -1.78 6.64 -24.91 -0.17 -1.94 16 19 C -0.15 -1.38 7.08 -24.60 -0.17 -1.55 16 20 C 0.06 0.58 7.57 -2.30 -0.02 0.56 16 21 N -0.68 -8.51 7.15 -107.09 -0.77 -9.27 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.74 7.40 -51.93 -0.38 0.35 16 24 H 0.10 1.85 7.88 -51.93 -0.41 1.44 16 25 H 0.01 0.34 7.88 -51.93 -0.41 -0.07 16 26 H 0.01 0.40 8.01 -51.92 -0.42 -0.02 16 27 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 28 H 0.17 3.40 8.06 -52.49 -0.42 2.97 16 29 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.35 3.42 8.91 -39.30 -0.35 3.07 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -33.52 293.07 -8.09 -41.60 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.21 Total: 1.25 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.40 Total: -18.47 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.19 Total: -49.39 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.52 -8.09 -41.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.880 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds