Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35322 * 126.12184 * 2 1 4 4 C 1.50693 * 126.03916 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47459 * 84.99980 * 4 3 2 6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.39866 * 107.91923 * 180.23770 * 3 2 1 14 14 N 1.30840 * 108.20205 * 359.56087 * 13 3 2 15 15 N 1.34941 * 126.13284 * 179.97438 * 2 1 3 16 16 C 1.46505 * 126.03708 * 0.02562 * 15 2 1 17 17 H 1.09006 * 109.87980 * 15.41846 * 16 15 2 18 18 C 1.54320 * 109.88677 * 254.22029 * 16 15 2 19 19 C 1.55133 * 103.01975 * 218.30689 * 18 16 15 20 20 C 1.54908 * 101.65225 * 35.65347 * 19 18 16 21 21 N 1.47438 * 109.89079 * 136.44854 * 16 15 2 22 22 H 1.09004 * 109.46904 * 90.03002 * 1 2 3 23 23 H 1.09003 * 109.46816 * 210.01864 * 1 2 3 24 24 H 1.08996 * 109.47987 * 330.02248 * 1 2 3 25 25 H 1.09004 * 109.47104 * 324.99227 * 4 3 2 26 26 H 1.09010 * 109.46918 * 204.99745 * 4 3 2 27 27 H 0.97000 * 119.99462 * 359.97438 * 8 7 5 28 28 H 1.07997 * 125.90238 * 179.73481 * 13 3 2 29 29 H 1.09000 * 110.70920 * 336.69219 * 18 16 15 30 30 H 1.09004 * 110.70458 * 99.92351 * 18 16 15 31 31 H 1.09005 * 110.99374 * 277.56648 * 19 18 16 32 32 H 1.09003 * 111.02556 * 153.76151 * 19 18 16 33 33 H 1.09005 * 110.37470 * 204.10076 * 20 19 18 34 34 H 1.09003 * 110.37359 * 81.76244 * 20 19 18 35 35 H 1.00892 * 111.00356 * 240.68021 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 1.8431 2.5276 -0.0005 5 6 1.5708 2.9683 1.4146 6 1 1.7169 2.2785 2.2326 7 6 1.1340 4.2519 1.6649 8 7 0.9555 5.0918 0.6688 9 14 0.7958 4.7979 3.4190 10 1 -0.6214 4.5149 3.7610 11 1 1.6865 4.0576 4.3485 12 1 1.0531 6.2552 3.5422 13 6 3.6334 0.6562 -0.0055 14 7 3.6334 -0.6522 0.0008 15 7 2.3027 -1.0899 0.0005 16 6 1.8541 -2.4845 0.0006 17 1 0.7999 -2.5349 -0.2723 18 6 2.0685 -3.1048 1.3973 19 6 2.5297 -4.5497 1.0709 20 6 3.3734 -4.3272 -0.2090 21 7 2.6574 -3.2699 -0.9542 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8899 0.5141 24 1 -0.3635 0.8901 0.5134 25 1 0.9307 2.6154 -0.5905 26 1 2.6186 3.1587 -0.4347 27 1 1.1315 4.8083 -0.2420 28 1 4.5082 1.2894 -0.0110 29 1 2.8436 -2.5669 1.9431 30 1 1.1358 -3.1161 1.9613 31 1 1.6755 -5.1958 0.8681 32 1 3.1415 -4.9562 1.8762 33 1 3.4177 -5.2432 -0.7983 34 1 4.3779 -3.9938 0.0518 35 1 2.0749 -3.6674 -1.6757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = 46.082925 kcal Electronic energy + Delta-G solvation = -16597.935173 eV Core-core repulsion = 14017.053840 eV Total energy + Delta-G solvation = -2580.881333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14658 -39.34364 -35.79438 -33.69761 -33.03364 -31.25464 -30.05812 -28.19304 -27.08307 -24.71939 -23.43122 -22.26901 -20.83967 -20.16334 -18.77881 -17.84230 -17.47614 -16.34547 -15.71215 -15.63657 -15.16353 -14.96288 -14.52699 -14.41333 -13.95136 -13.69926 -13.43517 -13.24834 -13.02469 -12.92210 -12.67103 -12.44794 -12.21062 -12.10820 -11.91248 -11.88072 -11.30032 -10.89767 -10.48747 -10.01760 -9.78013 -9.04048 -8.51472 -6.29664 1.01683 1.53755 1.63462 1.68303 1.81624 2.01392 2.61831 3.03069 3.22110 3.46490 3.66336 3.74532 3.95422 4.03859 4.20777 4.28771 4.43653 4.57535 4.68298 4.72887 4.77191 4.81870 4.91430 4.95114 5.05683 5.15890 5.23225 5.30359 5.59199 5.65859 5.83248 6.08020 6.23399 6.25970 6.49300 6.67780 6.94108 7.49367 8.79376 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040751 B = 0.005874 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.941205 B = 4765.786144 C = 4935.013546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.064 3.936 3 C -0.223 4.223 4 C 0.087 3.913 5 C -0.591 4.591 6 H 0.037 0.963 7 C -0.035 4.035 8 N -0.939 5.939 9 Si 1.118 2.882 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.018 3.982 14 N -0.299 5.299 15 N -0.357 5.357 16 C 0.312 3.688 17 H 0.120 0.880 18 C -0.146 4.146 19 C -0.137 4.137 20 C 0.056 3.944 21 N -0.697 5.697 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.068 0.932 25 H -0.001 1.001 26 H -0.010 1.010 27 H 0.256 0.744 28 H 0.176 0.824 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 -21.023 -0.208 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.234 4.234 4 C 0.049 3.951 5 C -0.629 4.629 6 H 0.055 0.945 7 C -0.232 4.232 8 N -0.576 5.576 9 Si 0.939 3.061 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.208 1.208 13 C -0.167 4.167 14 N -0.121 5.121 15 N -0.144 5.144 16 C 0.120 3.880 17 H 0.138 0.862 18 C -0.186 4.186 19 C -0.176 4.176 20 C -0.072 4.072 21 N -0.330 5.330 22 H 0.105 0.895 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.017 0.983 26 H 0.008 0.992 27 H 0.065 0.935 28 H 0.193 0.807 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.891 -20.548 0.632 20.577 hybrid contribution -0.197 -0.467 -1.012 1.132 sum -1.088 -21.015 -0.380 21.046 Atomic orbital electron populations 1.20390 0.85803 1.03992 1.03527 1.21023 0.95599 0.86512 1.03123 1.20225 0.92981 0.96406 1.13743 1.17446 0.93643 0.88063 0.95948 1.22242 1.48087 0.99590 0.93016 0.94488 1.27306 0.93591 0.93504 1.08823 1.70879 1.48156 1.38140 1.00473 0.82921 0.77480 0.75756 0.69901 1.19400 1.20293 1.20762 1.23827 0.98017 0.92585 1.02223 1.77116 0.98950 1.11578 1.24457 1.48946 1.02741 1.05764 1.56956 1.22304 0.95466 0.76648 0.93623 0.86220 1.23114 1.02913 0.97316 0.95237 1.23140 1.01004 0.94603 0.98806 1.22850 0.97275 0.93132 0.93954 1.60582 1.31972 1.26112 1.14337 0.89539 0.88916 0.91277 0.98311 0.99220 0.93458 0.80701 0.93080 0.88402 0.88326 0.89383 0.88106 0.92564 0.81718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 9.56 71.23 0.68 -1.85 16 2 C 0.06 2.59 6.93 41.41 0.29 2.88 16 3 C -0.22 -10.70 5.29 -20.15 -0.11 -10.81 16 4 C 0.09 4.82 4.32 29.10 0.13 4.94 16 5 C -0.59 -34.89 9.09 25.60 0.23 -34.65 16 6 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 7 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 8 N -0.94 -58.82 13.65 21.45 0.29 -58.52 16 9 Si 1.12 51.50 29.90 68.60 2.05 53.55 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.02 0.83 11.96 85.23 1.02 1.85 16 14 N -0.30 -12.62 12.47 -57.03 -0.71 -13.34 16 15 N -0.36 -12.97 3.47 -320.42 -1.11 -14.08 16 16 C 0.31 7.75 4.12 129.66 0.53 8.29 16 17 H 0.12 2.30 7.07 -2.38 -0.02 2.28 16 18 C -0.15 -3.17 6.64 31.77 0.21 -2.96 16 19 C -0.14 -1.96 7.08 31.98 0.23 -1.74 16 20 C 0.06 0.98 7.57 86.77 0.66 1.64 16 21 N -0.70 -15.56 7.15 -492.72 -3.52 -19.08 16 22 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 23 H 0.09 2.22 7.40 -2.39 -0.02 2.20 16 24 H 0.07 2.63 7.88 -2.39 -0.02 2.61 16 25 H 0.00 -0.07 7.88 -2.38 -0.02 -0.09 16 26 H -0.01 -0.62 8.01 -2.38 -0.02 -0.64 16 27 H 0.26 16.27 7.22 -92.71 -0.67 15.60 16 28 H 0.18 7.38 8.06 -2.91 -0.02 7.36 16 29 H 0.05 1.48 8.05 -2.39 -0.02 1.46 16 30 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.36 5.89 8.91 -89.70 -0.80 5.09 16 Total: -1.00 -74.84 293.07 1.70 -73.14 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.38 Total: 12.35 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 4.33 Total: -34.01 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -5.06 Total: -105.03 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -74.84 1.70 -73.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.221 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds