Wall clock time and date at job start Mon Mar 30 2020 03:37:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35322 * 126.12184 * 2 1
4 4 C 1.50693 * 126.03916 * 359.97438 * 3 2 1
5 5 C 1.50696 * 109.47459 * 84.99980 * 4 3 2
6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3
8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5
11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5
12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5
13 13 C 1.39866 * 107.91923 * 180.23770 * 3 2 1
14 14 N 1.30840 * 108.20205 * 359.56087 * 13 3 2
15 15 N 1.34941 * 126.13284 * 179.97438 * 2 1 3
16 16 C 1.46505 * 126.03708 * 0.02562 * 15 2 1
17 17 H 1.09006 * 109.87980 * 15.41846 * 16 15 2
18 18 C 1.54320 * 109.88677 * 254.22029 * 16 15 2
19 19 C 1.55133 * 103.01975 * 218.30689 * 18 16 15
20 20 C 1.54908 * 101.65225 * 35.65347 * 19 18 16
21 21 N 1.47438 * 109.89079 * 136.44854 * 16 15 2
22 22 H 1.09004 * 109.46904 * 90.03002 * 1 2 3
23 23 H 1.09003 * 109.46816 * 210.01864 * 1 2 3
24 24 H 1.08996 * 109.47987 * 330.02248 * 1 2 3
25 25 H 1.09004 * 109.47104 * 324.99227 * 4 3 2
26 26 H 1.09010 * 109.46918 * 204.99745 * 4 3 2
27 27 H 0.97000 * 119.99462 * 359.97438 * 8 7 5
28 28 H 1.07997 * 125.90238 * 179.73481 * 13 3 2
29 29 H 1.09000 * 110.70920 * 336.69219 * 18 16 15
30 30 H 1.09004 * 110.70458 * 99.92351 * 18 16 15
31 31 H 1.09005 * 110.99374 * 277.56648 * 19 18 16
32 32 H 1.09003 * 111.02556 * 153.76151 * 19 18 16
33 33 H 1.09005 * 110.37470 * 204.10076 * 20 19 18
34 34 H 1.09003 * 110.37359 * 81.76244 * 20 19 18
35 35 H 1.00892 * 111.00356 * 240.68021 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3047 1.0931 0.0000
4 6 1.8431 2.5276 -0.0005
5 6 1.5708 2.9683 1.4146
6 1 1.7169 2.2785 2.2326
7 6 1.1340 4.2519 1.6649
8 7 0.9555 5.0918 0.6688
9 14 0.7958 4.7979 3.4190
10 1 -0.6214 4.5149 3.7610
11 1 1.6865 4.0576 4.3485
12 1 1.0531 6.2552 3.5422
13 6 3.6334 0.6562 -0.0055
14 7 3.6334 -0.6522 0.0008
15 7 2.3027 -1.0899 0.0005
16 6 1.8541 -2.4845 0.0006
17 1 0.7999 -2.5349 -0.2723
18 6 2.0685 -3.1048 1.3973
19 6 2.5297 -4.5497 1.0709
20 6 3.3734 -4.3272 -0.2090
21 7 2.6574 -3.2699 -0.9542
22 1 -0.3633 -0.0005 -1.0277
23 1 -0.3633 -0.8899 0.5141
24 1 -0.3635 0.8901 0.5134
25 1 0.9307 2.6154 -0.5905
26 1 2.6186 3.1587 -0.4347
27 1 1.1315 4.8083 -0.2420
28 1 4.5082 1.2894 -0.0110
29 1 2.8436 -2.5669 1.9431
30 1 1.1358 -3.1161 1.9613
31 1 1.6755 -5.1958 0.8681
32 1 3.1415 -4.9562 1.8762
33 1 3.4177 -5.2432 -0.7983
34 1 4.3779 -3.9938 0.0518
35 1 2.0749 -3.6674 -1.6757
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260414649.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:23
Heat of formation + Delta-G solvation = 46.082925 kcal
Electronic energy + Delta-G solvation = -16597.935173 eV
Core-core repulsion = 14017.053840 eV
Total energy + Delta-G solvation = -2580.881333 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.14658 -39.34364 -35.79438 -33.69761 -33.03364 -31.25464 -30.05812 -28.19304
-27.08307 -24.71939 -23.43122 -22.26901 -20.83967 -20.16334 -18.77881 -17.84230
-17.47614 -16.34547 -15.71215 -15.63657 -15.16353 -14.96288 -14.52699 -14.41333
-13.95136 -13.69926 -13.43517 -13.24834 -13.02469 -12.92210 -12.67103 -12.44794
-12.21062 -12.10820 -11.91248 -11.88072 -11.30032 -10.89767 -10.48747 -10.01760
-9.78013 -9.04048 -8.51472 -6.29664 1.01683 1.53755 1.63462 1.68303
1.81624 2.01392 2.61831 3.03069 3.22110 3.46490 3.66336 3.74532
3.95422 4.03859 4.20777 4.28771 4.43653 4.57535 4.68298 4.72887
4.77191 4.81870 4.91430 4.95114 5.05683 5.15890 5.23225 5.30359
5.59199 5.65859 5.83248 6.08020 6.23399 6.25970 6.49300 6.67780
6.94108 7.49367 8.79376
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.040751 B = 0.005874 C = 0.005672
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.941205 B = 4765.786144 C = 4935.013546
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.064 3.936
3 C -0.223 4.223
4 C 0.087 3.913
5 C -0.591 4.591
6 H 0.037 0.963
7 C -0.035 4.035
8 N -0.939 5.939
9 Si 1.118 2.882
10 H -0.269 1.269
11 H -0.278 1.278
12 H -0.282 1.282
13 C 0.018 3.982
14 N -0.299 5.299
15 N -0.357 5.357
16 C 0.312 3.688
17 H 0.120 0.880
18 C -0.146 4.146
19 C -0.137 4.137
20 C 0.056 3.944
21 N -0.697 5.697
22 H 0.086 0.914
23 H 0.092 0.908
24 H 0.068 0.932
25 H -0.001 1.001
26 H -0.010 1.010
27 H 0.256 0.744
28 H 0.176 0.824
29 H 0.050 0.950
30 H 0.097 0.903
31 H 0.098 0.902
32 H 0.088 0.912
33 H 0.101 0.899
34 H 0.056 0.944
35 H 0.362 0.638
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.622 -21.023 -0.208 21.086
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.063 4.063
3 C -0.234 4.234
4 C 0.049 3.951
5 C -0.629 4.629
6 H 0.055 0.945
7 C -0.232 4.232
8 N -0.576 5.576
9 Si 0.939 3.061
10 H -0.194 1.194
11 H -0.203 1.203
12 H -0.208 1.208
13 C -0.167 4.167
14 N -0.121 5.121
15 N -0.144 5.144
16 C 0.120 3.880
17 H 0.138 0.862
18 C -0.186 4.186
19 C -0.176 4.176
20 C -0.072 4.072
21 N -0.330 5.330
22 H 0.105 0.895
23 H 0.111 0.889
24 H 0.087 0.913
25 H 0.017 0.983
26 H 0.008 0.992
27 H 0.065 0.935
28 H 0.193 0.807
29 H 0.069 0.931
30 H 0.116 0.884
31 H 0.117 0.883
32 H 0.106 0.894
33 H 0.119 0.881
34 H 0.074 0.926
35 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -0.891 -20.548 0.632 20.577
hybrid contribution -0.197 -0.467 -1.012 1.132
sum -1.088 -21.015 -0.380 21.046
Atomic orbital electron populations
1.20390 0.85803 1.03992 1.03527 1.21023 0.95599 0.86512 1.03123
1.20225 0.92981 0.96406 1.13743 1.17446 0.93643 0.88063 0.95948
1.22242 1.48087 0.99590 0.93016 0.94488 1.27306 0.93591 0.93504
1.08823 1.70879 1.48156 1.38140 1.00473 0.82921 0.77480 0.75756
0.69901 1.19400 1.20293 1.20762 1.23827 0.98017 0.92585 1.02223
1.77116 0.98950 1.11578 1.24457 1.48946 1.02741 1.05764 1.56956
1.22304 0.95466 0.76648 0.93623 0.86220 1.23114 1.02913 0.97316
0.95237 1.23140 1.01004 0.94603 0.98806 1.22850 0.97275 0.93132
0.93954 1.60582 1.31972 1.26112 1.14337 0.89539 0.88916 0.91277
0.98311 0.99220 0.93458 0.80701 0.93080 0.88402 0.88326 0.89383
0.88106 0.92564 0.81718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.53 9.56 71.23 0.68 -1.85 16
2 C 0.06 2.59 6.93 41.41 0.29 2.88 16
3 C -0.22 -10.70 5.29 -20.15 -0.11 -10.81 16
4 C 0.09 4.82 4.32 29.10 0.13 4.94 16
5 C -0.59 -34.89 9.09 25.60 0.23 -34.65 16
6 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16
7 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16
8 N -0.94 -58.82 13.65 21.45 0.29 -58.52 16
9 Si 1.12 51.50 29.90 68.60 2.05 53.55 16
10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
13 C 0.02 0.83 11.96 85.23 1.02 1.85 16
14 N -0.30 -12.62 12.47 -57.03 -0.71 -13.34 16
15 N -0.36 -12.97 3.47 -320.42 -1.11 -14.08 16
16 C 0.31 7.75 4.12 129.66 0.53 8.29 16
17 H 0.12 2.30 7.07 -2.38 -0.02 2.28 16
18 C -0.15 -3.17 6.64 31.77 0.21 -2.96 16
19 C -0.14 -1.96 7.08 31.98 0.23 -1.74 16
20 C 0.06 0.98 7.57 86.77 0.66 1.64 16
21 N -0.70 -15.56 7.15 -492.72 -3.52 -19.08 16
22 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16
23 H 0.09 2.22 7.40 -2.39 -0.02 2.20 16
24 H 0.07 2.63 7.88 -2.39 -0.02 2.61 16
25 H 0.00 -0.07 7.88 -2.38 -0.02 -0.09 16
26 H -0.01 -0.62 8.01 -2.38 -0.02 -0.64 16
27 H 0.26 16.27 7.22 -92.71 -0.67 15.60 16
28 H 0.18 7.38 8.06 -2.91 -0.02 7.36 16
29 H 0.05 1.48 8.05 -2.39 -0.02 1.46 16
30 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16
31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16
32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
33 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16
34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
35 H 0.36 5.89 8.91 -89.70 -0.80 5.09 16
Total: -1.00 -74.84 293.07 1.70 -73.14
By element:
Atomic # 1 Polarization: 11.97 SS G_CDS: 0.38 Total: 12.35 kcal
Atomic # 6 Polarization: -38.34 SS G_CDS: 4.33 Total: -34.01 kcal
Atomic # 7 Polarization: -99.97 SS G_CDS: -5.06 Total: -105.03 kcal
Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal
Total: -74.84 1.70 -73.14 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260414649.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.221 kcal
(2) G-P(sol) polarization free energy of solvation -74.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds