Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.13100 * 2 1 4 4 C 1.50696 * 126.03620 * 0.26248 * 3 2 1 5 5 C 1.50702 * 109.47241 * 85.00585 * 4 3 2 6 6 H 1.07999 * 120.00017 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99845 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00048 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47059 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47426 * 119.99436 * 9 7 5 12 12 H 1.48494 * 109.47165 * 239.99960 * 9 7 5 13 13 C 1.39867 * 107.92134 * 180.26483 * 3 2 1 14 14 N 1.30834 * 108.20347 * 359.97438 * 13 3 2 15 15 N 1.34954 * 126.12392 * 180.30852 * 2 1 3 16 16 C 1.46500 * 126.03681 * 359.71674 * 15 2 1 17 17 H 1.09003 * 109.87798 * 344.57292 * 16 15 2 18 18 C 1.54312 * 109.88861 * 105.77407 * 16 15 2 19 19 C 1.55137 * 103.02031 * 97.12352 * 18 16 15 20 20 C 1.54912 * 101.65420 * 35.64901 * 19 18 16 21 21 N 1.47447 * 109.88656 * 223.54685 * 16 15 2 22 22 H 1.09006 * 109.47066 * 269.68970 * 1 2 3 23 23 H 1.09001 * 109.46541 * 29.68813 * 1 2 3 24 24 H 1.09000 * 109.47470 * 149.69066 * 1 2 3 25 25 H 1.09007 * 109.47205 * 205.00355 * 4 3 2 26 26 H 1.09002 * 109.47361 * 324.99947 * 4 3 2 27 27 H 0.97006 * 119.99736 * 180.02562 * 8 7 5 28 28 H 1.08000 * 125.89932 * 180.02562 * 13 3 2 29 29 H 1.09005 * 110.70678 * 215.50199 * 18 16 15 30 30 H 1.08998 * 110.71011 * 338.73936 * 18 16 15 31 31 H 1.09004 * 110.98841 * 277.56263 * 19 18 16 32 32 H 1.09004 * 111.02893 * 153.75833 * 19 18 16 33 33 H 1.08994 * 110.37834 * 204.10062 * 20 19 18 34 34 H 1.09007 * 110.46246 * 81.81030 * 20 19 18 35 35 H 1.00893 * 111.00144 * 1.87221 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 1.8434 2.5274 0.0056 5 6 1.5770 2.9640 1.4232 6 1 1.7266 2.2717 2.2385 7 6 1.1415 4.2469 1.6791 8 7 0.9589 5.0897 0.6862 9 14 0.8106 4.7878 3.4363 10 1 1.0899 3.6607 4.3620 11 1 1.6893 5.9360 3.7745 12 1 -0.6109 5.1962 3.5691 13 6 3.6335 0.6558 -0.0062 14 7 3.6333 -0.6525 -0.0092 15 7 2.3026 -1.0901 -0.0059 16 6 1.8538 -2.4846 -0.0075 17 1 0.8007 -2.5354 0.2692 18 6 2.0629 -3.1017 -1.4063 19 6 3.4156 -3.8473 -1.2608 20 6 3.3361 -4.3575 0.1997 21 7 2.6607 -3.2723 0.9426 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3632 0.8928 -0.5090 24 1 -0.3634 -0.8872 -0.5186 25 1 2.6172 3.1598 -0.4300 26 1 0.9286 2.6172 -0.5802 27 1 0.6528 5.9924 0.8664 28 1 4.5084 1.2890 -0.0073 29 1 1.2610 -3.8011 -1.6429 30 1 2.1322 -2.3223 -2.1651 31 1 4.2544 -3.1632 -1.3903 32 1 3.4811 -4.6793 -1.9620 33 1 4.3367 -4.5246 0.5984 34 1 2.7498 -5.2750 0.2515 35 1 3.3314 -2.6880 1.4185 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414651.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = 50.828235 kcal Electronic energy + Delta-G solvation = -16633.432708 eV Core-core repulsion = 14052.757146 eV Total energy + Delta-G solvation = -2580.675561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.22744 -39.25752 -35.42331 -33.67217 -33.11196 -31.16495 -30.22034 -28.22165 -27.34893 -24.62392 -23.40561 -22.28768 -20.67516 -20.14510 -18.41286 -18.10934 -16.92690 -16.53676 -16.22603 -15.50317 -14.86003 -14.76835 -14.43478 -14.27765 -14.14635 -13.67126 -13.54266 -13.13091 -13.03510 -12.91741 -12.63252 -12.45347 -12.39502 -12.17150 -11.88069 -11.79296 -11.46433 -11.25205 -10.51998 -10.22404 -9.73870 -8.98490 -8.10067 -6.22713 0.97814 1.41371 1.42556 1.54985 1.64053 2.02802 2.47793 3.06426 3.18644 3.49959 3.66364 3.85665 3.95411 4.10187 4.28064 4.41832 4.47629 4.67009 4.75168 4.77741 4.84111 4.87255 4.95622 5.00416 5.10160 5.23413 5.33495 5.45887 5.62053 5.75812 5.84269 5.88523 5.98153 6.32076 6.41419 6.88988 6.89691 7.45163 8.97329 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.044600 B = 0.005770 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.654239 B = 4851.299377 C = 4905.623125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.072 3.928 3 C -0.222 4.222 4 C 0.100 3.900 5 C -0.515 4.515 6 H 0.045 0.955 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.037 3.963 14 N -0.319 5.319 15 N -0.384 5.384 16 C 0.314 3.686 17 H 0.127 0.873 18 C -0.144 4.144 19 C -0.144 4.144 20 C 0.048 3.952 21 N -0.684 5.684 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.092 0.908 25 H -0.003 1.003 26 H 0.004 0.996 27 H 0.263 0.737 28 H 0.183 0.817 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -18.125 -3.019 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.233 4.233 4 C 0.062 3.938 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.201 1.201 13 C -0.147 4.147 14 N -0.140 5.140 15 N -0.172 5.172 16 C 0.123 3.877 17 H 0.144 0.856 18 C -0.183 4.183 19 C -0.183 4.183 20 C -0.081 4.081 21 N -0.315 5.315 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.015 0.985 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.200 0.800 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.730 -19.592 -2.788 19.803 hybrid contribution 0.275 2.262 0.308 2.300 sum 1.005 -17.330 -2.480 17.535 Atomic orbital electron populations 1.20371 0.85969 1.03775 1.03469 1.21043 0.95622 0.86582 1.02244 1.20457 0.92892 0.96927 1.12977 1.17313 0.94375 0.86597 0.95476 1.21415 1.43769 0.96889 0.93229 0.93621 1.25816 0.95493 0.96743 1.01056 1.70082 1.47908 1.06295 1.32875 0.85505 0.77969 0.78107 0.80088 1.19462 1.20509 1.20106 1.23855 0.98214 0.92120 1.00559 1.76929 0.98127 1.12437 1.26546 1.49357 1.03305 1.06248 1.58312 1.23022 0.98208 0.73106 0.93365 0.85616 1.23200 0.99960 1.00369 0.94803 1.23056 0.96377 1.00355 0.98466 1.23046 0.98947 0.94812 0.91308 1.62349 1.28565 1.13776 1.26802 0.90368 0.90847 0.88895 0.98509 0.97762 0.92787 0.79983 0.86815 0.91917 0.93000 0.88118 0.90709 0.88225 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.47 9.65 71.24 0.69 -1.78 16 2 C 0.07 2.77 6.93 41.40 0.29 3.06 16 3 C -0.22 -10.10 5.29 -20.15 -0.11 -10.20 16 4 C 0.10 5.41 5.19 29.10 0.15 5.56 16 5 C -0.51 -29.49 9.09 25.60 0.23 -29.26 16 6 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 9 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.04 1.55 11.96 85.24 1.02 2.57 16 14 N -0.32 -12.04 11.90 -57.03 -0.68 -12.72 16 15 N -0.38 -13.12 3.30 -320.42 -1.06 -14.18 16 16 C 0.31 8.01 4.25 129.65 0.55 8.56 16 17 H 0.13 2.87 7.08 -2.39 -0.02 2.85 16 18 C -0.14 -2.95 6.65 31.77 0.21 -2.74 16 19 C -0.14 -2.71 7.08 31.98 0.23 -2.48 16 20 C 0.05 0.87 7.57 86.78 0.66 1.53 16 21 N -0.68 -16.85 7.38 -492.74 -3.64 -20.48 16 22 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 23 H 0.07 2.57 7.24 -2.39 -0.02 2.55 16 24 H 0.09 2.17 7.41 -2.39 -0.02 2.16 16 25 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 26 H 0.00 0.24 7.30 -2.39 -0.02 0.22 16 27 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 28 H 0.18 6.93 8.06 -2.91 -0.02 6.91 16 29 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.54 8.03 -2.39 -0.02 1.52 16 31 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.35 10.03 7.97 -89.70 -0.71 9.31 16 Total: -1.00 -66.41 292.00 1.68 -64.73 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.37 Total: 16.02 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 4.38 Total: -24.35 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -5.09 Total: -103.07 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.41 1.68 -64.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414651.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.554 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds