Wall clock time and date at job start Mon Mar 30 2020 03:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.34888 * 126.11303 * 2 1 4 4 H 0.97002 * 126.02939 * 0.02562 * 3 2 1 5 5 N 1.40014 * 107.93488 * 179.73632 * 3 2 1 6 6 C 1.31046 * 108.24737 * 0.26223 * 5 3 2 7 7 C 1.35460 * 126.11171 * 180.18733 * 2 1 3 8 8 C 1.51286 * 142.53129 * 359.86717 * 7 2 1 9 9 C 1.50703 * 110.37696 * 44.20585 * 8 7 2 10 10 H 1.08003 * 119.99686 * 358.59611 * 9 8 7 11 11 C 1.37870 * 119.99743 * 178.59576 * 9 8 7 12 12 N 1.31513 * 120.00487 * 1.94189 * 11 9 8 13 13 Si 1.86801 * 119.99836 * 181.93887 * 11 9 8 14 14 H 1.48500 * 109.47196 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47138 * 120.00200 * 13 11 9 16 16 H 1.48498 * 109.47327 * 240.00199 * 13 11 9 17 17 C 1.52994 * 110.29242 * 282.11579 * 8 7 2 18 18 N 1.46899 * 109.47401 * 69.06267 * 17 8 7 19 19 C 1.54342 * 105.21074 * 163.17955 * 8 7 2 20 20 H 1.09004 * 110.76735 * 144.82721 * 19 8 7 21 21 C 1.53000 * 110.77318 * 268.23320 * 19 8 7 22 22 C 1.51317 * 142.35538 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.46862 * 95.13522 * 1 2 3 24 24 H 1.08995 * 109.46919 * 215.14295 * 1 2 3 25 25 H 1.09001 * 109.47120 * 335.13889 * 1 2 3 26 26 H 0.97000 * 120.00639 * 185.00033 * 12 11 9 27 27 H 1.09007 * 109.46912 * 189.06405 * 17 8 7 28 28 H 1.09002 * 109.47560 * 309.06140 * 17 8 7 29 29 H 1.00900 * 110.99724 * 66.56695 * 18 17 8 30 30 H 1.00900 * 111.00296 * 190.51778 * 18 17 8 31 31 H 1.09003 * 109.46955 * 166.90578 * 21 19 8 32 32 H 1.09001 * 109.47011 * 286.90907 * 21 19 8 33 33 H 1.09004 * 109.46996 * 46.90719 * 21 19 8 34 34 H 1.08997 * 110.29866 * 316.16945 * 22 6 5 35 35 H 1.09004 * 110.29521 * 78.30437 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3021 1.0897 0.0000 4 1 2.0046 2.0130 0.0004 5 7 3.6323 0.6529 0.0061 6 6 3.6339 -0.6576 0.0040 7 6 2.3054 -1.0943 -0.0036 8 6 2.2696 -2.6068 -0.0064 9 6 1.2429 -3.1055 -0.9904 10 1 0.6461 -2.4016 -1.5515 11 6 1.0656 -4.4603 -1.1744 12 7 1.7652 -5.3177 -0.4637 13 14 -0.1686 -5.0783 -2.4331 14 1 -0.8213 -3.9208 -3.0960 15 1 0.5327 -5.9006 -3.4516 16 1 -1.1979 -5.9047 -1.7528 17 6 1.9586 -3.1328 1.3962 18 7 0.5694 -2.8061 1.7449 19 6 3.6844 -3.0445 -0.4409 20 1 3.9815 -3.9581 0.0742 21 6 3.7536 -3.2283 -1.9582 22 6 4.5596 -1.8546 0.0064 23 1 -0.3633 -0.0920 -1.0236 24 1 -0.3633 -0.8403 0.5915 25 1 -0.3633 0.9324 0.4321 26 1 1.6942 -6.2683 -0.6429 27 1 2.0937 -4.2142 1.4169 28 1 2.6326 -2.6686 2.1162 29 1 -0.0786 -3.3101 1.1584 30 1 0.3895 -2.9869 2.7211 31 1 4.7958 -3.3068 -2.2675 32 1 3.2218 -4.1376 -2.2386 33 1 3.2923 -2.3715 -2.4494 34 1 5.3776 -1.7014 -0.6975 35 1 4.9501 -2.0285 1.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260424258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:42 Heat of formation + Delta-G solvation = 74.758933 kcal Electronic energy + Delta-G solvation = -17849.191746 eV Core-core repulsion = 15269.553898 eV Total energy + Delta-G solvation = -2579.637848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70684 -36.92386 -33.24893 -31.87694 -31.21793 -29.44050 -27.66999 -26.42065 -25.28021 -24.14217 -21.09134 -20.18895 -18.58882 -17.99092 -16.04048 -15.44817 -14.81156 -14.43099 -14.35159 -13.47540 -13.29500 -12.93575 -12.59169 -12.13385 -12.00079 -11.90364 -11.61029 -11.17901 -11.00940 -10.93972 -10.81547 -10.55042 -10.20048 -10.11521 -9.59269 -9.40389 -9.03731 -8.71280 -8.37095 -8.26418 -7.48719 -7.00354 -5.94046 -3.97382 2.76349 3.27782 3.38329 3.42369 3.61263 3.83190 4.45280 5.13201 5.31657 5.66099 5.84152 5.94857 6.02561 6.18032 6.30767 6.36834 6.57028 6.59466 6.78304 6.80036 6.91558 6.98875 7.10372 7.12078 7.30495 7.47947 7.63199 7.63614 7.74658 7.78892 8.04356 8.21566 8.45260 8.61091 8.65164 8.72571 9.02662 9.62826 11.07015 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.011785 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.134692 B = 2375.363013 C = 2686.371314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.085 3.915 3 N -0.496 5.496 4 H 0.426 0.574 5 N -0.308 5.308 6 C 0.039 3.961 7 C -0.177 4.177 8 C 0.151 3.849 9 C -0.470 4.470 10 H 0.054 0.946 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.288 1.288 17 C 0.084 3.916 18 N -0.840 5.840 19 C -0.062 4.062 20 H 0.079 0.921 21 C -0.107 4.107 22 C -0.034 4.034 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.257 0.743 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.344 0.656 30 H 0.307 0.693 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 4.694 1.734 5.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 N -0.205 5.205 4 H 0.268 0.732 5 N -0.132 5.132 6 C -0.128 4.128 7 C -0.188 4.188 8 C 0.149 3.851 9 C -0.509 4.509 10 H 0.073 0.927 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.706 3.294 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.047 4.047 18 N -0.367 5.367 19 C -0.082 4.082 20 H 0.097 0.903 21 C -0.164 4.164 22 C -0.073 4.073 23 H 0.083 0.917 24 H 0.125 0.875 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.157 0.843 30 H 0.116 0.884 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.375 6.256 1.574 6.462 hybrid contribution -1.386 -1.447 -0.526 2.072 sum -1.010 4.809 1.047 5.024 Atomic orbital electron populations 1.20377 0.88066 1.02798 1.02647 1.20081 0.93766 0.86912 1.03255 1.46189 1.03738 1.07357 1.63266 0.73193 1.76793 0.96417 1.11753 1.28203 1.23343 0.98750 0.91508 0.99174 1.20955 0.90818 0.97681 1.09316 1.17158 0.92214 0.83125 0.92567 1.20960 1.18264 0.90778 1.20915 0.92737 1.24859 0.95996 0.96971 0.95867 1.69890 1.42167 1.01904 1.39080 0.86760 0.81775 0.78856 0.82011 1.19969 1.21328 1.21424 1.21722 0.87607 0.99577 0.95803 1.58719 1.05984 1.66191 1.05840 1.21743 0.95416 0.94689 0.96341 0.90265 1.21465 0.97050 1.02383 0.95538 1.20824 0.95971 0.89754 1.00756 0.91746 0.87488 0.93732 0.93298 0.92158 0.96235 0.84287 0.88366 0.96526 0.91430 0.93959 0.91949 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.43 36.01 0.38 -0.98 16 2 C 0.08 1.69 7.21 -82.24 -0.59 1.10 16 3 N -0.50 -9.21 7.35 33.49 0.25 -8.96 16 4 H 0.43 6.20 8.96 -182.66 -1.64 4.56 16 5 N -0.31 -6.54 12.70 33.85 0.43 -6.11 16 6 C 0.04 0.84 8.10 -82.02 -0.66 0.18 16 7 C -0.18 -3.91 5.20 -104.72 -0.54 -4.46 16 8 C 0.15 3.40 0.24 -155.82 -0.04 3.37 16 9 C -0.47 -11.33 5.41 -34.44 -0.19 -11.52 16 10 H 0.05 1.39 7.76 -52.48 -0.41 0.98 16 11 C 0.06 1.53 3.66 -17.82 -0.07 1.46 16 12 N -0.89 -22.10 10.24 55.43 0.57 -21.53 16 13 Si 0.88 19.77 29.54 -169.99 -5.02 14.75 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.08 1.84 5.35 -3.83 -0.02 1.82 16 18 N -0.84 -16.64 8.05 -10.37 -0.08 -16.73 16 19 C -0.06 -1.34 2.28 -89.22 -0.20 -1.55 16 20 H 0.08 1.79 7.66 -51.93 -0.40 1.39 16 21 C -0.11 -2.32 8.09 37.16 0.30 -2.02 16 22 C -0.03 -0.67 6.30 -26.88 -0.17 -0.84 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.11 1.94 6.90 -51.93 -0.36 1.58 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.26 6.31 8.32 -40.82 -0.34 5.97 16 27 H 0.06 1.45 6.20 -51.92 -0.32 1.12 16 28 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.34 7.20 8.02 -39.29 -0.32 6.88 16 30 H 0.31 5.39 9.08 -39.29 -0.36 5.04 16 31 H 0.02 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.07 1.58 6.24 -51.93 -0.32 1.26 16 33 H 0.04 0.95 7.84 -51.93 -0.41 0.55 16 34 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 276.93 15.07 4.17 4.17 Total: -1.00 -26.72 276.93 -7.67 -34.39 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.18 Total: 13.45 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.81 Total: -13.44 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 1.16 Total: -53.32 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.72 -7.67 -34.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.154 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds