Wall clock time and date at job start Mon Mar 30 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.34888 * 126.11303 * 2 1 4 4 H 0.97002 * 126.02939 * 0.02562 * 3 2 1 5 5 N 1.40014 * 107.93488 * 179.73632 * 3 2 1 6 6 C 1.31046 * 108.24737 * 0.26223 * 5 3 2 7 7 C 1.35460 * 126.11171 * 180.18733 * 2 1 3 8 8 C 1.51286 * 142.53129 * 359.86717 * 7 2 1 9 9 C 1.50703 * 110.37696 * 44.20585 * 8 7 2 10 10 H 1.08003 * 119.99686 * 358.59611 * 9 8 7 11 11 C 1.37870 * 119.99743 * 178.59576 * 9 8 7 12 12 N 1.31513 * 120.00487 * 1.94189 * 11 9 8 13 13 Si 1.86801 * 119.99836 * 181.93887 * 11 9 8 14 14 H 1.48500 * 109.47196 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47138 * 120.00200 * 13 11 9 16 16 H 1.48498 * 109.47327 * 240.00199 * 13 11 9 17 17 C 1.52994 * 110.29242 * 282.11579 * 8 7 2 18 18 N 1.46899 * 109.47401 * 69.06267 * 17 8 7 19 19 C 1.54342 * 105.21074 * 163.17955 * 8 7 2 20 20 H 1.09004 * 110.76735 * 144.82721 * 19 8 7 21 21 C 1.53000 * 110.77318 * 268.23320 * 19 8 7 22 22 C 1.51317 * 142.35538 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.46862 * 95.13522 * 1 2 3 24 24 H 1.08995 * 109.46919 * 215.14295 * 1 2 3 25 25 H 1.09001 * 109.47120 * 335.13889 * 1 2 3 26 26 H 0.97000 * 120.00639 * 185.00033 * 12 11 9 27 27 H 1.09007 * 109.46912 * 189.06405 * 17 8 7 28 28 H 1.09002 * 109.47560 * 309.06140 * 17 8 7 29 29 H 1.00900 * 110.99724 * 66.56695 * 18 17 8 30 30 H 1.00900 * 111.00296 * 190.51778 * 18 17 8 31 31 H 1.09003 * 109.46955 * 166.90578 * 21 19 8 32 32 H 1.09001 * 109.47011 * 286.90907 * 21 19 8 33 33 H 1.09004 * 109.46996 * 46.90719 * 21 19 8 34 34 H 1.08997 * 110.29866 * 316.16945 * 22 6 5 35 35 H 1.09004 * 110.29521 * 78.30437 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3021 1.0897 0.0000 4 1 2.0046 2.0130 0.0004 5 7 3.6323 0.6529 0.0061 6 6 3.6339 -0.6576 0.0040 7 6 2.3054 -1.0943 -0.0036 8 6 2.2696 -2.6068 -0.0064 9 6 1.2429 -3.1055 -0.9904 10 1 0.6461 -2.4016 -1.5515 11 6 1.0656 -4.4603 -1.1744 12 7 1.7652 -5.3177 -0.4637 13 14 -0.1686 -5.0783 -2.4331 14 1 -0.8213 -3.9208 -3.0960 15 1 0.5327 -5.9006 -3.4516 16 1 -1.1979 -5.9047 -1.7528 17 6 1.9586 -3.1328 1.3962 18 7 0.5694 -2.8061 1.7449 19 6 3.6844 -3.0445 -0.4409 20 1 3.9815 -3.9581 0.0742 21 6 3.7536 -3.2283 -1.9582 22 6 4.5596 -1.8546 0.0064 23 1 -0.3633 -0.0920 -1.0236 24 1 -0.3633 -0.8403 0.5915 25 1 -0.3633 0.9324 0.4321 26 1 1.6942 -6.2683 -0.6429 27 1 2.0937 -4.2142 1.4169 28 1 2.6326 -2.6686 2.1162 29 1 -0.0786 -3.3101 1.1584 30 1 0.3895 -2.9869 2.7211 31 1 4.7958 -3.3068 -2.2675 32 1 3.2218 -4.1376 -2.2386 33 1 3.2923 -2.3715 -2.4494 34 1 5.3776 -1.7014 -0.6975 35 1 4.9501 -2.0285 1.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260424258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:41 Heat of formation + Delta-G solvation = 57.442117 kcal Electronic energy + Delta-G solvation = -17849.942659 eV Core-core repulsion = 15269.553898 eV Total energy + Delta-G solvation = -2580.388762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.29778 -38.60622 -34.92087 -33.67852 -32.77089 -31.06347 -29.32422 -28.06346 -26.89768 -25.91942 -22.78875 -21.83934 -20.19883 -19.70467 -17.59836 -17.24803 -16.55971 -16.15974 -15.97391 -15.14567 -14.89419 -14.61603 -14.24185 -13.70683 -13.61011 -13.41462 -13.18073 -12.92454 -12.80114 -12.62972 -12.48032 -12.27336 -11.93372 -11.87623 -11.30289 -11.10950 -10.72103 -10.50531 -10.21955 -9.85889 -9.13658 -8.64106 -7.81625 -5.88034 1.18752 1.45697 1.54209 1.59849 2.16736 2.18962 2.59679 3.40450 3.57299 4.14972 4.27409 4.44870 4.57192 4.58648 4.76025 4.90546 4.95573 4.98584 5.10383 5.17978 5.26585 5.39756 5.42997 5.52565 5.62134 5.70174 5.87700 5.93774 6.03204 6.04747 6.21346 6.67403 6.78410 6.87609 7.01790 7.07742 7.23065 7.73196 9.17031 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.011785 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.134692 B = 2375.363013 C = 2686.371314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.089 3.911 3 N -0.480 5.480 4 H 0.444 0.556 5 N -0.323 5.323 6 C 0.023 3.977 7 C -0.211 4.211 8 C 0.149 3.851 9 C -0.466 4.466 10 H 0.038 0.962 11 C 0.039 3.961 12 N -0.902 5.902 13 Si 0.918 3.082 14 H -0.278 1.278 15 H -0.293 1.293 16 H -0.289 1.289 17 C 0.094 3.906 18 N -0.831 5.831 19 C -0.062 4.062 20 H 0.066 0.934 21 C -0.097 4.097 22 C -0.028 4.028 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.254 0.746 27 H 0.038 0.962 28 H 0.017 0.983 29 H 0.338 0.662 30 H 0.322 0.678 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 5.811 1.895 6.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 N -0.191 5.191 4 H 0.290 0.710 5 N -0.147 5.147 6 C -0.142 4.142 7 C -0.221 4.221 8 C 0.147 3.853 9 C -0.505 4.505 10 H 0.056 0.944 11 C -0.159 4.159 12 N -0.543 5.543 13 Si 0.747 3.253 14 H -0.203 1.203 15 H -0.220 1.220 16 H -0.215 1.215 17 C -0.038 4.038 18 N -0.359 5.359 19 C -0.083 4.083 20 H 0.084 0.916 21 C -0.154 4.154 22 C -0.067 4.067 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.151 0.849 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.066 7.401 1.744 7.604 hybrid contribution -1.328 -1.734 -0.571 2.258 sum -1.262 5.667 1.173 5.923 Atomic orbital electron populations 1.20404 0.86023 1.04218 1.02901 1.20502 0.95085 0.86702 1.01491 1.46176 1.02854 1.08197 1.61921 0.71002 1.76725 0.97740 1.11510 1.28753 1.23581 0.99110 0.91960 0.99590 1.21077 0.91682 0.97777 1.11589 1.17121 0.92069 0.83877 0.92195 1.20936 1.18245 0.90415 1.20863 0.94404 1.25160 0.96864 0.97135 0.96762 1.69974 1.42927 1.01701 1.39685 0.86137 0.80474 0.78067 0.80608 1.20279 1.22031 1.21517 1.21534 0.88571 0.97967 0.95703 1.58654 1.04762 1.65741 1.06744 1.21662 0.95648 0.94907 0.96034 0.91591 1.21336 0.98032 1.00486 0.95589 1.20765 0.95743 0.88369 1.01851 0.91477 0.88674 0.90212 0.93670 0.94402 0.96484 0.84919 0.86811 0.94225 0.93572 0.95403 0.90467 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 10.43 71.24 0.74 -1.67 16 2 C 0.09 3.36 7.21 41.45 0.30 3.66 16 3 N -0.48 -16.63 7.35 -47.95 -0.35 -16.99 16 4 H 0.44 11.59 8.96 -213.37 -1.91 9.68 16 5 N -0.32 -13.08 12.70 -46.81 -0.59 -13.68 16 6 C 0.02 0.98 8.10 43.26 0.35 1.33 16 7 C -0.21 -9.05 5.20 -19.93 -0.10 -9.15 16 8 C 0.15 6.64 0.24 -53.03 -0.01 6.63 16 9 C -0.47 -22.34 5.41 25.60 0.14 -22.20 16 10 H 0.04 1.92 7.76 -2.91 -0.02 1.90 16 11 C 0.04 1.89 3.66 84.65 0.31 2.20 16 12 N -0.90 -44.90 10.24 21.44 0.22 -44.68 16 13 Si 0.92 40.49 29.54 68.60 2.03 42.52 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 17 C 0.09 4.07 5.35 86.30 0.46 4.54 16 18 N -0.83 -32.18 8.05 -186.72 -1.50 -33.69 16 19 C -0.06 -2.68 2.28 -9.89 -0.02 -2.70 16 20 H 0.07 2.99 7.66 -2.38 -0.02 2.97 16 21 C -0.10 -4.17 8.09 71.98 0.58 -3.59 16 22 C -0.03 -1.08 6.30 30.50 0.19 -0.89 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.09 3.27 6.90 -2.39 -0.02 3.25 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.25 12.49 8.32 -92.71 -0.77 11.72 16 27 H 0.04 1.82 6.20 -2.38 -0.01 1.81 16 28 H 0.02 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.34 13.94 8.02 -89.69 -0.72 13.22 16 30 H 0.32 10.87 9.08 -89.69 -0.81 10.06 16 31 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 32 H 0.05 2.15 6.24 -2.39 -0.01 2.14 16 33 H 0.03 1.23 7.84 -2.38 -0.02 1.21 16 34 H 0.08 2.70 7.85 -2.39 -0.02 2.68 16 35 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -55.22 276.93 0.42 -54.80 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -2.32 Total: 33.54 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 2.94 Total: -21.83 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -2.23 Total: -109.03 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -55.22 0.42 -54.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.243 kcal (2) G-P(sol) polarization free energy of solvation -55.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds