Wall clock time and date at job start Mon Mar 30 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39272 * 126.41011 * 2 1 4 4 C 1.41597 * 126.55594 * 0.04270 * 3 2 1 5 5 H 1.08007 * 120.00384 * 0.02562 * 4 3 2 6 6 C 1.39698 * 120.00128 * 179.97438 * 4 3 2 7 7 N 1.31027 * 119.99647 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00342 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.46739 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47461 * 119.99601 * 8 6 4 11 11 H 1.48500 * 109.46977 * 240.00365 * 8 6 4 12 12 C 1.41877 * 106.88660 * 180.02562 * 3 2 1 13 13 N 1.30318 * 108.04513 * 359.74194 * 12 3 2 14 14 N 1.34499 * 126.39935 * 180.02562 * 2 1 3 15 15 C 1.46501 * 125.68002 * 359.95897 * 14 2 1 16 16 H 1.09002 * 110.28731 * 359.29741 * 15 14 2 17 17 C 1.54259 * 110.32785 * 121.42498 * 15 14 2 18 18 C 1.54374 * 105.06107 * 118.99402 * 17 15 14 19 19 N 1.48551 * 104.59541 * 23.85769 * 18 17 15 20 20 C 1.46903 * 111.00202 * 200.95973 * 19 18 17 21 21 C 1.48561 * 104.22369 * 320.51345 * 19 18 17 22 22 H 1.08997 * 109.46814 * 269.97859 * 1 2 3 23 23 H 1.09001 * 109.47060 * 29.96922 * 1 2 3 24 24 H 1.08999 * 109.47581 * 149.97190 * 1 2 3 25 25 H 0.97009 * 119.99717 * 180.02562 * 7 6 4 26 26 H 1.08006 * 125.97587 * 179.97438 * 12 3 2 27 27 H 1.08992 * 110.32465 * 237.89576 * 17 15 14 28 28 H 1.09004 * 110.32056 * 0.09932 * 17 15 14 29 29 H 1.09004 * 110.41045 * 142.63429 * 18 17 15 30 30 H 1.08995 * 110.41604 * 264.95412 * 18 17 15 31 31 H 1.08997 * 109.47341 * 60.12179 * 20 19 18 32 32 H 1.09004 * 109.47609 * 180.12652 * 20 19 18 33 33 H 1.09004 * 109.46869 * 300.11702 * 20 19 18 34 34 H 1.09005 * 110.41198 * 280.70728 * 21 19 18 35 35 H 1.08998 * 110.41368 * 158.26250 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3337 1.1208 0.0000 4 6 1.9189 2.4747 0.0008 5 1 0.8664 2.7171 0.0020 6 6 2.8710 3.4970 0.0013 7 7 4.1479 3.2029 0.0014 8 14 2.3239 5.2830 0.0031 9 1 0.8401 5.3462 0.0033 10 1 2.8487 5.9603 1.2159 11 1 2.8476 5.9624 -1.2091 12 6 3.6709 0.6467 -0.0006 13 7 3.6373 -0.6560 0.0046 14 7 2.3052 -1.0826 -0.0005 15 6 1.8544 -2.4765 -0.0003 16 1 0.7654 -2.5216 0.0129 17 6 2.4064 -3.2184 -1.2349 18 6 3.2761 -4.3582 -0.6624 19 7 2.7359 -4.5923 0.7014 20 6 3.7252 -5.2693 1.5505 21 6 2.4370 -3.2305 1.2144 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5142 25 1 4.8091 3.9128 0.0021 26 1 4.5610 1.2585 -0.0012 27 1 1.5884 -3.6276 -1.8278 28 1 3.0142 -2.5459 -1.8403 29 1 3.1741 -5.2567 -1.2711 30 1 4.3206 -4.0508 -0.6120 31 1 4.6185 -4.6500 1.6320 32 1 3.3032 -5.4305 2.5425 33 1 3.9880 -6.2298 1.1072 34 1 3.3499 -2.7458 1.5606 35 1 1.7032 -3.2799 2.0189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260522914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:41 Heat of formation + Delta-G solvation = 75.183307 kcal Electronic energy + Delta-G solvation = -16751.171232 eV Core-core repulsion = 14171.551786 eV Total energy + Delta-G solvation = -2579.619446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69184 -38.10704 -33.65001 -32.42605 -30.97837 -29.63267 -27.89216 -26.53930 -25.13451 -23.89529 -21.25602 -20.96527 -19.33444 -18.13073 -16.69684 -15.88115 -15.38961 -14.74034 -14.39949 -14.13901 -13.51710 -13.38114 -12.87827 -12.50193 -12.38043 -12.03080 -11.92966 -11.44050 -11.37439 -11.23494 -11.20778 -10.96060 -10.85960 -10.72453 -10.50856 -10.24416 -9.90196 -9.21680 -8.76107 -8.45111 -7.64704 -7.07310 -6.41119 -3.94295 3.03216 3.21586 3.26323 3.39603 3.73330 4.15414 4.33535 4.42320 4.82053 4.95302 5.23924 5.38987 5.49921 5.54885 5.59060 5.64073 5.83426 5.85775 6.02992 6.10679 6.13645 6.20015 6.25871 6.34839 6.49919 6.73089 6.86490 6.94557 7.04769 7.34086 7.67732 7.70342 8.18535 8.59450 8.69694 9.09894 9.20175 9.55375 10.58539 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.048160 B = 0.006083 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.256102 B = 4601.928802 C = 4862.155923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.097 4.097 3 C -0.016 4.016 4 C -0.432 4.432 5 H 0.069 0.931 6 C 0.065 3.935 7 N -0.843 5.843 8 Si 0.913 3.087 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.031 3.969 13 N -0.339 5.339 14 N -0.385 5.385 15 C 0.175 3.825 16 H 0.095 0.905 17 C -0.131 4.131 18 C 0.036 3.964 19 N -0.517 5.517 20 C 0.015 3.985 21 C 0.025 3.975 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.272 0.728 26 H 0.201 0.799 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -9.989 0.305 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.218 4.218 3 C -0.026 4.026 4 C -0.467 4.467 5 H 0.087 0.913 6 C -0.145 4.145 7 N -0.475 5.475 8 Si 0.739 3.261 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.156 4.156 13 N -0.160 5.160 14 N -0.174 5.174 15 C 0.070 3.930 16 H 0.113 0.887 17 C -0.170 4.170 18 C -0.092 4.092 19 N -0.241 5.241 20 C -0.134 4.134 21 C -0.104 4.104 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.217 0.783 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.229 -11.356 0.313 11.577 hybrid contribution 0.100 2.097 0.091 2.102 sum -2.129 -9.259 0.404 9.509 Atomic orbital electron populations 1.19818 0.90130 1.00671 1.00084 1.20776 0.92487 0.87251 1.21292 1.17971 0.90350 0.92389 1.01840 1.18782 0.93506 0.89105 1.45258 0.91291 1.25633 0.94476 1.00830 0.93527 1.69469 1.01070 1.33745 1.43249 0.86187 0.79484 0.82386 0.78033 1.19028 1.20433 1.20432 1.25053 1.00345 0.89512 1.00664 1.76495 0.97047 1.15468 1.27008 1.47372 1.03831 1.02869 1.63288 1.21380 0.98290 0.79149 0.94222 0.88655 1.22684 0.99734 0.96874 0.97702 1.23061 0.97533 0.98154 0.90435 1.65390 1.38761 1.17307 1.02628 1.22480 0.94086 0.98925 0.97933 1.23496 1.01253 0.88229 0.97387 0.93602 0.91543 0.94250 0.91723 0.78266 0.90961 0.89969 0.90458 0.93372 0.95112 0.91462 0.91512 0.91884 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 9.74 36.01 0.35 -0.60 16 2 C -0.10 -2.34 7.06 -81.04 -0.57 -2.92 16 3 C -0.02 -0.43 5.93 -106.84 -0.63 -1.07 16 4 C -0.43 -11.77 9.13 -37.76 -0.34 -12.11 16 5 H 0.07 1.81 7.34 -52.48 -0.39 1.42 16 6 C 0.07 1.70 5.49 -17.35 -0.10 1.61 16 7 N -0.84 -22.46 10.32 55.54 0.57 -21.89 16 8 Si 0.91 19.73 29.56 -169.99 -5.02 14.70 16 9 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.03 0.85 10.91 -16.80 -0.18 0.66 16 13 N -0.34 -8.52 11.89 30.97 0.37 -8.15 16 14 N -0.38 -8.71 3.23 -48.46 -0.16 -8.86 16 15 C 0.18 3.14 3.81 -66.55 -0.25 2.88 16 16 H 0.10 1.58 6.72 -51.93 -0.35 1.23 16 17 C -0.13 -2.09 6.73 -25.35 -0.17 -2.26 16 18 C 0.04 0.52 6.49 -2.19 -0.01 0.50 16 19 N -0.52 -7.49 5.66 -238.23 -1.35 -8.84 16 20 C 0.01 0.18 9.53 60.07 0.57 0.75 16 21 C 0.03 0.42 6.19 -2.18 -0.01 0.41 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.30 7.58 -51.93 -0.39 0.90 16 24 H 0.04 0.66 7.11 -51.93 -0.37 0.29 16 25 H 0.27 6.67 8.30 -40.82 -0.34 6.34 16 26 H 0.20 5.55 5.77 -52.48 -0.30 5.25 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.74 7.97 -51.93 -0.41 0.32 16 31 H 0.03 0.40 7.97 -51.93 -0.41 -0.02 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.21 7.46 -51.93 -0.39 0.82 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -28.92 285.96 -7.73 -36.65 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.09 Total: 4.22 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.36 Total: -12.14 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.56 Total: -47.74 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.92 -7.73 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260522914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.833 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds