Wall clock time and date at job start Mon Mar 30 2020 03:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39272 * 126.41011 * 2 1 4 4 C 1.41597 * 126.55594 * 0.04270 * 3 2 1 5 5 H 1.08007 * 120.00384 * 0.02562 * 4 3 2 6 6 C 1.39698 * 120.00128 * 179.97438 * 4 3 2 7 7 N 1.31027 * 119.99647 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00342 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.46739 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47461 * 119.99601 * 8 6 4 11 11 H 1.48500 * 109.46977 * 240.00365 * 8 6 4 12 12 C 1.41877 * 106.88660 * 180.02562 * 3 2 1 13 13 N 1.30318 * 108.04513 * 359.74194 * 12 3 2 14 14 N 1.34499 * 126.39935 * 180.02562 * 2 1 3 15 15 C 1.46501 * 125.68002 * 359.95897 * 14 2 1 16 16 H 1.09002 * 110.28731 * 359.29741 * 15 14 2 17 17 C 1.54259 * 110.32785 * 121.42498 * 15 14 2 18 18 C 1.54374 * 105.06107 * 118.99402 * 17 15 14 19 19 N 1.48551 * 104.59541 * 23.85769 * 18 17 15 20 20 C 1.46903 * 111.00202 * 200.95973 * 19 18 17 21 21 C 1.48561 * 104.22369 * 320.51345 * 19 18 17 22 22 H 1.08997 * 109.46814 * 269.97859 * 1 2 3 23 23 H 1.09001 * 109.47060 * 29.96922 * 1 2 3 24 24 H 1.08999 * 109.47581 * 149.97190 * 1 2 3 25 25 H 0.97009 * 119.99717 * 180.02562 * 7 6 4 26 26 H 1.08006 * 125.97587 * 179.97438 * 12 3 2 27 27 H 1.08992 * 110.32465 * 237.89576 * 17 15 14 28 28 H 1.09004 * 110.32056 * 0.09932 * 17 15 14 29 29 H 1.09004 * 110.41045 * 142.63429 * 18 17 15 30 30 H 1.08995 * 110.41604 * 264.95412 * 18 17 15 31 31 H 1.08997 * 109.47341 * 60.12179 * 20 19 18 32 32 H 1.09004 * 109.47609 * 180.12652 * 20 19 18 33 33 H 1.09004 * 109.46869 * 300.11702 * 20 19 18 34 34 H 1.09005 * 110.41198 * 280.70728 * 21 19 18 35 35 H 1.08998 * 110.41368 * 158.26250 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3337 1.1208 0.0000 4 6 1.9189 2.4747 0.0008 5 1 0.8664 2.7171 0.0020 6 6 2.8710 3.4970 0.0013 7 7 4.1479 3.2029 0.0014 8 14 2.3239 5.2830 0.0031 9 1 0.8401 5.3462 0.0033 10 1 2.8487 5.9603 1.2159 11 1 2.8476 5.9624 -1.2091 12 6 3.6709 0.6467 -0.0006 13 7 3.6373 -0.6560 0.0046 14 7 2.3052 -1.0826 -0.0005 15 6 1.8544 -2.4765 -0.0003 16 1 0.7654 -2.5216 0.0129 17 6 2.4064 -3.2184 -1.2349 18 6 3.2761 -4.3582 -0.6624 19 7 2.7359 -4.5923 0.7014 20 6 3.7252 -5.2693 1.5505 21 6 2.4370 -3.2305 1.2144 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3634 -0.8897 -0.5142 25 1 4.8091 3.9128 0.0021 26 1 4.5610 1.2585 -0.0012 27 1 1.5884 -3.6276 -1.8278 28 1 3.0142 -2.5459 -1.8403 29 1 3.1741 -5.2567 -1.2711 30 1 4.3206 -4.0508 -0.6120 31 1 4.6185 -4.6500 1.6320 32 1 3.3032 -5.4305 2.5425 33 1 3.9880 -6.2298 1.1072 34 1 3.3499 -2.7458 1.5606 35 1 1.7032 -3.2799 2.0189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260522914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:40 Heat of formation + Delta-G solvation = 56.134061 kcal Electronic energy + Delta-G solvation = -16751.997269 eV Core-core repulsion = 14171.551786 eV Total energy + Delta-G solvation = -2580.445483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45131 -39.51020 -35.48589 -33.98952 -32.70653 -31.15548 -29.43807 -28.23390 -26.43700 -25.74134 -22.83735 -22.19278 -21.22662 -19.81550 -18.60884 -17.30325 -16.79027 -16.58346 -15.83730 -15.45139 -15.13770 -14.85527 -14.41056 -14.18097 -13.80465 -13.69362 -13.43690 -12.96549 -12.90029 -12.64168 -12.55932 -12.48527 -12.37431 -12.28442 -12.20136 -11.79701 -11.67086 -11.11717 -10.71407 -9.66099 -9.51297 -9.03944 -8.32710 -5.95270 1.27032 1.45137 1.56721 1.59132 2.10152 2.35364 2.42689 3.08952 3.50786 3.56991 3.67241 3.93426 4.19123 4.24021 4.41872 4.47795 4.50076 4.58214 4.65175 4.71033 4.82684 4.91550 4.93461 4.98946 5.03033 5.05234 5.23135 5.35151 5.63739 5.75382 5.77026 5.90222 6.15882 6.62538 6.80678 7.15916 7.20737 7.58557 8.68447 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.048160 B = 0.006083 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.256102 B = 4601.928802 C = 4862.155923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.084 4.084 3 C -0.066 4.066 4 C -0.463 4.463 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.874 5.874 8 Si 0.986 3.014 9 H -0.259 1.259 10 H -0.274 1.274 11 H -0.274 1.274 12 C -0.002 4.002 13 N -0.350 5.350 14 N -0.371 5.371 15 C 0.158 3.842 16 H 0.120 0.880 17 C -0.127 4.127 18 C 0.039 3.961 19 N -0.509 5.509 20 C 0.013 3.987 21 C 0.032 3.968 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.276 0.724 26 H 0.183 0.817 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.031 0.969 31 H 0.017 0.983 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 -11.530 0.253 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.208 4.208 3 C -0.075 4.075 4 C -0.497 4.497 5 H 0.089 0.911 6 C -0.190 4.190 7 N -0.507 5.507 8 Si 0.809 3.191 9 H -0.183 1.183 10 H -0.200 1.200 11 H -0.199 1.199 12 C -0.186 4.186 13 N -0.174 5.174 14 N -0.159 5.159 15 C 0.054 3.946 16 H 0.138 0.862 17 C -0.165 4.165 18 C -0.088 4.088 19 N -0.233 5.233 20 C -0.136 4.136 21 C -0.097 4.097 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.200 0.800 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.217 -12.936 0.263 13.608 hybrid contribution 0.679 2.348 0.112 2.447 sum -3.537 -10.588 0.374 11.169 Atomic orbital electron populations 1.19939 0.86631 1.02289 1.01666 1.21534 0.94695 0.86830 1.17708 1.18403 0.91004 0.93783 1.04355 1.19028 0.93880 0.89865 1.46939 0.91084 1.26510 0.94387 1.05096 0.92958 1.69591 1.02084 1.35059 1.44010 0.85084 0.79243 0.76734 0.78075 1.18265 1.19956 1.19927 1.24828 1.00308 0.90220 1.03266 1.76413 0.98712 1.14602 1.27644 1.47811 1.02874 1.04686 1.60566 1.21950 0.99828 0.76781 0.96001 0.86198 1.22650 1.00481 0.96669 0.96732 1.23099 0.96195 0.98762 0.90787 1.65467 1.39543 1.15511 1.02804 1.22583 0.93093 0.99379 0.98520 1.23371 1.00081 0.89141 0.97139 0.91841 0.91641 0.90891 0.91382 0.80037 0.87943 0.92901 0.87370 0.95041 0.96415 0.90212 0.89159 0.95096 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.71 9.74 71.24 0.69 -1.02 16 2 C -0.08 -3.99 7.06 42.40 0.30 -3.69 16 3 C -0.07 -3.69 5.93 -21.30 -0.13 -3.81 16 4 C -0.46 -25.84 9.13 23.45 0.21 -25.63 16 5 H 0.07 3.77 7.34 -2.91 -0.02 3.75 16 6 C 0.02 0.90 5.49 85.17 0.47 1.37 16 7 N -0.87 -48.59 10.32 21.79 0.22 -48.37 16 8 Si 0.99 41.07 29.56 68.60 2.03 43.10 16 9 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 12 C 0.00 -0.09 10.91 85.82 0.94 0.84 16 13 N -0.35 -18.19 11.89 -55.94 -0.67 -18.85 16 14 N -0.37 -16.66 3.23 -307.22 -0.99 -17.65 16 15 C 0.16 5.31 3.81 45.89 0.18 5.48 16 16 H 0.12 3.48 6.72 -2.39 -0.02 3.47 16 17 C -0.13 -3.76 6.73 31.49 0.21 -3.55 16 18 C 0.04 1.03 6.49 86.45 0.56 1.59 16 19 N -0.51 -13.34 5.66 -907.63 -5.14 -18.47 16 20 C 0.01 0.28 9.53 127.69 1.22 1.50 16 21 C 0.03 1.00 6.19 86.45 0.54 1.54 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 24 H 0.07 2.17 7.11 -2.39 -0.02 2.15 16 25 H 0.28 14.08 8.30 -92.70 -0.77 13.31 16 26 H 0.18 10.87 5.77 -2.91 -0.02 10.85 16 27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.05 1.90 7.87 -2.38 -0.02 1.89 16 29 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.03 0.93 7.97 -2.39 -0.02 0.91 16 31 H 0.02 0.43 7.97 -2.39 -0.02 0.41 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.18 7.46 -2.38 -0.02 1.16 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -64.96 285.96 1.71 -63.24 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 1.07 Total: 22.38 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.19 Total: -25.38 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -6.57 Total: -103.34 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -64.96 1.71 -63.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260522914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.378 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds