Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.35316 * 126.12601 * 85.02144 * 10 9 7 12 12 C 1.39872 * 107.91718 * 179.97438 * 11 10 9 13 13 N 1.30829 * 108.20506 * 0.02562 * 12 11 10 14 14 N 1.34947 * 126.12756 * 264.71741 * 10 9 7 15 15 C 1.46506 * 126.03499 * 0.02571 * 14 10 9 16 16 H 1.08995 * 109.50361 * 0.09022 * 15 14 10 17 17 C 1.53114 * 109.50265 * 240.00376 * 15 14 10 18 18 C 1.53129 * 109.15679 * 182.40657 * 17 15 14 19 19 C 1.53036 * 109.27673 * 57.65551 * 18 17 15 20 20 N 1.46843 * 109.52242 * 300.82132 * 19 18 17 21 21 C 1.46844 * 111.20206 * 61.74290 * 20 19 18 22 22 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 24 24 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 25 25 H 1.07997 * 126.04408 * 359.94648 * 11 10 9 26 26 H 1.08004 * 125.89537 * 179.97438 * 12 11 10 27 27 H 1.08997 * 109.52656 * 302.31082 * 17 15 14 28 28 H 1.08998 * 109.52325 * 62.44471 * 17 15 14 29 29 H 1.09000 * 109.49792 * 177.59589 * 18 17 15 30 30 H 1.09001 * 109.50231 * 297.71385 * 18 17 15 31 31 H 1.09007 * 109.46104 * 60.83521 * 19 18 17 32 32 H 1.08998 * 109.46185 * 180.81101 * 19 18 17 33 33 H 1.00907 * 110.99237 * 185.83725 * 20 19 18 34 34 H 1.09000 * 109.46426 * 178.23545 * 21 20 19 35 35 H 1.09009 * 109.45836 * 58.27009 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.8209 -4.1893 1.0883 12 6 3.6551 -5.2242 0.6529 13 7 3.5689 -5.2978 -0.6504 14 7 2.6712 -4.3145 -1.0859 15 6 2.2823 -4.0565 -2.4746 16 1 1.5737 -3.2290 -2.5064 17 6 1.6311 -5.3104 -3.0645 18 6 1.2826 -5.0521 -4.5331 19 6 2.5531 -4.6653 -5.2934 20 7 3.1377 -3.4604 -4.6912 21 6 3.5239 -3.6985 -3.2946 22 1 -0.4850 -0.8401 0.0004 23 1 0.6247 -2.5570 0.8897 24 1 0.6242 -2.5567 -0.8903 25 1 2.6745 -3.8794 2.1125 26 1 4.2656 -5.8533 1.2838 27 1 2.3255 -6.1478 -2.9968 28 1 0.7227 -5.5446 -2.5094 29 1 0.8575 -5.9555 -4.9704 30 1 0.5583 -4.2401 -4.5978 31 1 3.2716 -5.4833 -5.2398 32 1 2.3060 -4.4668 -6.3363 33 1 3.9229 -3.1304 -5.2323 34 1 3.9820 -2.7979 -2.8858 35 1 4.2379 -4.5211 -3.2505 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = 59.242868 kcal Electronic energy + Delta-G solvation = -16907.617044 eV Core-core repulsion = 14327.306368 eV Total energy + Delta-G solvation = -2580.310675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61735 -38.21905 -33.84624 -32.96605 -31.59855 -30.63859 -28.34296 -26.58575 -23.78827 -23.21201 -22.96411 -20.84298 -19.39579 -18.85057 -17.10590 -16.51785 -15.55892 -14.68443 -14.46130 -14.10105 -13.80095 -13.76120 -13.52888 -13.05054 -12.82163 -12.60671 -12.42252 -11.91699 -11.57615 -11.25297 -10.88303 -10.70082 -10.60155 -10.48792 -10.39098 -10.14948 -9.84851 -9.10648 -8.52001 -8.43830 -8.34229 -7.67417 -6.45190 -4.17619 2.66413 3.09097 3.41766 3.45006 3.58767 3.60996 4.26631 4.49471 4.84013 4.85849 4.94229 5.13926 5.30374 5.38723 5.49051 5.53557 5.65083 5.71548 5.81201 5.89371 5.98044 6.00402 6.16517 6.26564 6.41678 6.57766 6.69229 6.94980 7.02364 7.28858 7.33424 7.39957 7.77773 8.01925 8.36274 8.46392 8.75684 9.52684 10.93730 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.008756 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.955955 B = 3196.871669 C = 3941.762511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 1.075 2.925 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.592 4.592 8 H 0.052 0.948 9 C 0.059 3.941 10 C 0.147 3.853 11 C -0.300 4.300 12 C 0.040 3.960 13 N -0.327 5.327 14 N -0.369 5.369 15 C 0.171 3.829 16 H 0.114 0.886 17 C -0.126 4.126 18 C -0.115 4.115 19 C 0.056 3.944 20 N -0.685 5.685 21 C 0.057 3.943 22 H 0.269 0.731 23 H 0.036 0.964 24 H 0.020 0.980 25 H 0.137 0.863 26 H 0.171 0.829 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.347 0.653 34 H 0.082 0.918 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 -8.998 -7.307 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.183 4.183 3 Si 0.904 3.096 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.631 4.631 8 H 0.071 0.929 9 C 0.020 3.980 10 C 0.019 3.981 11 C -0.329 4.329 12 C -0.145 4.145 13 N -0.148 5.148 14 N -0.152 5.152 15 C 0.068 3.932 16 H 0.132 0.868 17 C -0.165 4.165 18 C -0.154 4.154 19 C -0.074 4.074 20 N -0.317 5.317 21 C -0.073 4.073 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.155 0.845 26 H 0.188 0.812 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.048 -7.684 -8.331 12.035 hybrid contribution 0.813 -1.817 0.781 2.138 sum 4.861 -9.502 -7.550 13.074 Atomic orbital electron populations 1.70746 1.06831 1.30641 1.46159 1.25861 0.96434 1.02621 0.93429 0.83443 0.74496 0.74607 0.77099 1.21473 1.21162 1.21182 1.21841 0.94435 0.90383 1.56406 0.92919 1.18181 0.92306 0.89753 0.97720 1.21807 0.96623 0.93523 0.86121 1.21088 1.08443 1.04048 0.99313 1.23617 0.99726 0.98765 0.92416 1.77062 1.12866 1.11997 1.12846 1.48498 1.34668 1.26269 1.05745 1.21113 0.96750 0.98631 0.76689 0.86783 1.21909 1.01065 0.97574 0.95941 1.21568 0.97754 1.01741 0.94289 1.21963 0.96062 0.91065 0.98265 1.60130 1.36569 1.32462 1.02536 1.22107 0.95670 1.01218 0.88266 0.92035 0.94595 0.96184 0.84470 0.81167 0.91185 0.91465 0.91120 0.90609 0.95248 0.90590 0.83511 0.89942 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.85 13.65 55.43 0.76 -26.10 16 2 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 3 Si 1.08 25.13 29.90 -169.99 -5.08 20.04 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.59 -16.51 9.09 -34.44 -0.31 -16.82 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.49 4.46 -29.04 -0.13 1.36 16 10 C 0.15 3.36 6.12 -82.27 -0.50 2.85 16 11 C -0.30 -6.31 10.72 -40.01 -0.43 -6.74 16 12 C 0.04 0.76 12.02 -17.37 -0.21 0.55 16 13 N -0.33 -6.57 12.43 30.62 0.38 -6.19 16 14 N -0.37 -7.68 3.28 -50.62 -0.17 -7.85 16 15 C 0.17 3.13 3.07 -67.85 -0.21 2.92 16 16 H 0.11 2.34 6.56 -51.93 -0.34 2.00 16 17 C -0.13 -1.94 5.55 -26.61 -0.15 -2.08 16 18 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 19 C 0.06 0.66 6.55 -3.84 -0.03 0.63 16 20 N -0.68 -9.44 6.84 -113.82 -0.78 -10.22 16 21 C 0.06 0.95 6.09 -3.84 -0.02 0.93 16 22 H 0.27 7.88 7.22 -40.82 -0.29 7.58 16 23 H 0.04 0.94 8.01 -51.93 -0.42 0.52 16 24 H 0.02 0.52 6.74 -51.93 -0.35 0.17 16 25 H 0.14 2.72 8.06 -52.49 -0.42 2.30 16 26 H 0.17 2.48 8.06 -52.48 -0.42 2.06 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.35 3.98 8.90 -39.29 -0.35 3.63 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -30.72 289.08 -7.96 -38.68 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.18 Total: 4.78 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.25 Total: -17.51 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.19 Total: -50.36 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.72 -7.96 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.923 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds