Wall clock time and date at job start Mon Mar 30 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47173 * 269.99576 * 3 2 1 5 5 H 1.48497 * 109.46989 * 29.99889 * 3 2 1 6 6 H 1.48507 * 109.46853 * 149.99660 * 3 2 1 7 7 C 1.37872 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.50711 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.35309 * 126.12485 * 84.97349 * 10 9 7 12 12 C 1.39870 * 107.92133 * 180.02562 * 11 10 9 13 13 N 1.30838 * 108.19667 * 359.74167 * 12 11 10 14 14 N 1.34940 * 126.12498 * 264.99503 * 10 9 7 15 15 C 1.46505 * 126.03892 * 359.96025 * 14 10 9 16 16 H 1.09003 * 109.50133 * 359.91991 * 15 14 10 17 17 C 1.53123 * 109.50077 * 119.99725 * 15 14 10 18 18 C 1.53118 * 109.15585 * 177.63607 * 17 15 14 19 19 C 1.53036 * 109.28007 * 302.34276 * 18 17 15 20 20 N 1.46846 * 109.52162 * 59.18140 * 19 18 17 21 21 C 1.46846 * 111.19997 * 298.26076 * 20 19 18 22 22 H 0.97002 * 119.99984 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47350 * 59.99382 * 9 7 2 24 24 H 1.09003 * 109.47076 * 299.99523 * 9 7 2 25 25 H 1.08002 * 126.04191 * 0.02562 * 11 10 9 26 26 H 1.07997 * 125.90353 * 179.97438 * 12 11 10 27 27 H 1.08993 * 109.52379 * 57.73211 * 17 15 14 28 28 H 1.08997 * 109.57561 * 297.56842 * 17 15 14 29 29 H 1.09008 * 109.50062 * 182.40805 * 18 17 15 30 30 H 1.09000 * 109.50693 * 62.28496 * 18 17 15 31 31 H 1.08998 * 109.46728 * 299.16963 * 19 18 17 32 32 H 1.09004 * 109.46553 * 179.19847 * 19 18 17 33 33 H 1.00904 * 111.00089 * 62.35801 * 20 19 18 34 34 H 1.08999 * 109.46373 * 181.76104 * 21 20 19 35 35 H 1.08998 * 109.45881 * 301.72191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.8214 -4.1887 1.0893 12 6 3.6562 -5.2231 0.6540 13 7 3.5650 -5.3009 -0.6489 14 7 2.6749 -4.3111 -1.0853 15 6 2.2902 -4.0496 -2.4745 16 1 1.5786 -3.2246 -2.5059 17 6 3.5340 -3.6831 -3.2890 18 6 3.1322 -3.4693 -4.7510 19 6 2.4639 -4.7394 -5.2823 20 7 1.2796 -5.0471 -4.4705 21 6 1.6463 -5.3028 -3.0717 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5570 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.6747 -3.8790 2.1135 26 1 4.2673 -5.8517 1.2846 27 1 4.2621 -4.4918 -3.2259 28 1 3.9723 -2.7667 -2.8940 29 1 4.0201 -3.2500 -5.3441 30 1 2.4337 -2.6352 -4.8182 31 1 3.1674 -5.5702 -5.2276 32 1 2.1638 -4.5856 -6.3188 33 1 0.5948 -4.3088 -4.5355 34 1 0.7524 -5.5582 -2.5027 35 1 2.3537 -6.1309 -3.0274 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:53 Heat of formation + Delta-G solvation = 59.775724 kcal Electronic energy + Delta-G solvation = -16898.935811 eV Core-core repulsion = 14318.648242 eV Total energy + Delta-G solvation = -2580.287569 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57958 -38.39099 -33.55890 -32.79011 -31.43696 -30.78178 -28.31522 -26.94383 -23.63946 -23.30820 -22.88917 -21.05481 -19.54186 -18.79565 -16.51347 -16.16707 -15.70312 -14.89989 -14.62013 -14.51861 -14.24734 -13.54131 -13.06755 -12.80566 -12.45665 -12.34267 -12.14382 -11.93958 -11.57540 -11.24837 -11.19532 -10.89756 -10.79819 -10.65688 -10.48706 -10.04853 -9.74051 -9.60448 -8.81081 -8.55945 -8.15425 -7.61320 -6.17942 -4.22646 2.72903 3.15618 3.21979 3.29215 3.33914 3.66428 4.32658 4.34581 4.72365 4.95731 5.03959 5.07783 5.17287 5.36118 5.48569 5.51693 5.64740 5.84020 5.86195 5.89705 6.02907 6.09682 6.21181 6.30135 6.45434 6.64910 6.79052 6.92518 7.29566 7.32416 7.45439 7.46122 7.77474 7.85267 8.15983 8.52730 8.81443 9.42286 10.91702 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.008736 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.084137 B = 3204.456996 C = 3957.828148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.072 3.928 10 C 0.139 3.861 11 C -0.300 4.300 12 C 0.039 3.961 13 N -0.326 5.326 14 N -0.367 5.367 15 C 0.133 3.867 16 H 0.106 0.894 17 C -0.124 4.124 18 C -0.155 4.155 19 C 0.054 3.946 20 N -0.680 5.680 21 C 0.054 3.946 22 H 0.264 0.736 23 H 0.027 0.973 24 H 0.046 0.954 25 H 0.137 0.863 26 H 0.170 0.830 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.343 0.657 34 H 0.078 0.922 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -7.133 -6.913 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.034 3.966 10 C 0.012 3.988 11 C -0.329 4.329 12 C -0.147 4.147 13 N -0.147 5.147 14 N -0.149 5.149 15 C 0.029 3.971 16 H 0.124 0.876 17 C -0.162 4.162 18 C -0.195 4.195 19 C -0.076 4.076 20 N -0.308 5.308 21 C -0.076 4.076 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.155 0.845 26 H 0.187 0.813 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.096 0.904 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.897 -8.304 -8.281 12.358 hybrid contribution 0.488 2.414 1.241 2.758 sum 4.385 -5.890 -7.040 10.172 Atomic orbital electron populations 1.69940 1.05993 1.27113 1.49921 1.24973 0.94893 0.99277 0.94889 0.86510 0.79944 0.82948 0.78211 1.20601 1.20952 1.19698 1.20952 0.93088 0.89495 1.51780 0.92411 1.18056 0.91608 0.88024 0.98925 1.22111 0.96639 0.94044 0.86039 1.21098 1.08277 1.04216 0.99357 1.23616 0.99769 0.98818 0.92455 1.77064 1.13244 1.11588 1.12832 1.48446 1.34884 1.26116 1.05493 1.21998 0.97579 0.99762 0.77777 0.87581 1.21850 0.97313 1.02797 0.94268 1.22290 1.01795 0.99381 0.95997 1.22081 0.92159 0.96290 0.97033 1.60758 1.12729 1.48442 1.08887 1.22334 1.00725 0.96566 0.88011 0.92625 0.95470 0.93546 0.84493 0.81261 0.90956 0.91052 0.91014 0.91386 0.90829 0.90548 0.83882 0.90374 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.96 9.09 -34.44 -0.31 -14.28 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.07 1.81 5.15 -29.03 -0.15 1.66 16 10 C 0.14 3.11 6.12 -82.26 -0.50 2.61 16 11 C -0.30 -6.23 10.72 -40.02 -0.43 -6.66 16 12 C 0.04 0.72 12.03 -17.36 -0.21 0.52 16 13 N -0.33 -6.47 12.43 30.62 0.38 -6.09 16 14 N -0.37 -7.44 3.28 -50.61 -0.17 -7.60 16 15 C 0.13 2.32 3.06 -67.85 -0.21 2.11 16 16 H 0.11 2.00 6.56 -51.93 -0.34 1.66 16 17 C -0.12 -1.95 5.55 -26.61 -0.15 -2.10 16 18 C -0.15 -1.91 6.08 -26.65 -0.16 -2.07 16 19 C 0.05 0.61 6.55 -3.84 -0.03 0.59 16 20 N -0.68 -8.74 6.87 -113.82 -0.78 -9.53 16 21 C 0.05 0.82 6.09 -3.84 -0.02 0.79 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 23 H 0.03 0.69 6.88 -51.93 -0.36 0.34 16 24 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 26 H 0.17 2.46 8.06 -52.49 -0.42 2.03 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.34 4.15 8.86 -39.29 -0.35 3.80 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -29.15 290.35 -7.98 -37.13 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.24 Total: 5.43 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.27 Total: -15.24 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.17 Total: -47.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.15 -7.98 -37.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.903 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds