Wall clock time and date at job start Mon Mar 30 2020 03:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.12530 * 2 1 4 4 C 1.50702 * 126.04227 * 359.93711 * 3 2 1 5 5 C 1.50706 * 109.46810 * 85.00203 * 4 3 2 6 6 H 1.08002 * 119.99921 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99817 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00550 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99915 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47186 * 119.99756 * 9 7 5 12 12 H 1.48499 * 109.47251 * 239.99757 * 9 7 5 13 13 C 1.39871 * 107.92025 * 179.97438 * 3 2 1 14 14 N 1.30844 * 108.20169 * 359.97438 * 13 3 2 15 15 N 1.34947 * 126.12611 * 179.68721 * 2 1 3 16 16 C 1.46499 * 126.03598 * 0.03440 * 15 2 1 17 17 H 1.08994 * 110.29325 * 2.12799 * 16 15 2 18 18 C 1.54261 * 110.32548 * 239.99784 * 16 15 2 19 19 C 1.54376 * 105.06549 * 241.11135 * 18 16 15 20 20 N 1.48559 * 104.59225 * 23.84926 * 19 18 16 21 21 C 1.48559 * 104.22497 * 320.51690 * 20 19 18 22 22 H 1.09002 * 109.47152 * 90.02603 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02703 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02684 * 1 2 3 25 25 H 1.08990 * 109.47350 * 204.99912 * 4 3 2 26 26 H 1.09002 * 109.47242 * 325.00601 * 4 3 2 27 27 H 0.96998 * 120.00426 * 179.97438 * 8 7 5 28 28 H 1.07998 * 125.90286 * 180.02562 * 13 3 2 29 29 H 1.09014 * 110.32097 * 0.02562 * 18 16 15 30 30 H 1.08994 * 110.32240 * 122.20479 * 18 16 15 31 31 H 1.08998 * 110.41625 * 142.63333 * 19 18 16 32 32 H 1.09003 * 110.40785 * 264.95881 * 19 18 16 33 33 H 1.00908 * 110.99575 * 200.96327 * 20 19 18 34 34 H 1.08995 * 110.41676 * 280.70467 * 21 20 19 35 35 H 1.08997 * 110.41156 * 158.25896 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 -0.0013 5 6 1.5704 2.9687 1.4136 6 1 1.7169 2.2793 2.2320 7 6 1.1336 4.2524 1.6634 8 7 0.9547 5.0918 0.6669 9 14 0.7961 4.7995 3.4173 10 1 1.0732 3.6761 4.3482 11 1 1.6733 5.9492 3.7548 12 1 -0.6260 5.2081 3.5433 13 6 3.6335 0.6560 0.0006 14 7 3.6334 -0.6524 0.0015 15 7 2.3026 -1.0900 0.0060 16 6 1.8539 -2.4845 0.0129 17 1 0.7656 -2.5316 -0.0254 18 6 2.3777 -3.2098 1.2696 19 6 3.2644 -4.3536 0.7324 20 7 3.6821 -3.9002 -0.6192 21 6 2.4681 -3.2514 -1.1780 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 2.6189 3.1584 -0.4353 26 1 0.9311 2.6153 -0.5916 27 1 0.6471 5.9947 0.8426 28 1 4.5084 1.2891 0.0011 29 1 2.9684 -2.5279 1.8816 30 1 1.5466 -3.6142 1.8472 31 1 4.1353 -4.4924 1.3729 32 1 2.6918 -5.2787 0.6649 33 1 3.9698 -4.6812 -1.1897 34 1 1.7705 -4.0034 -1.5464 35 1 2.7396 -2.5601 -1.9758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:42 Heat of formation + Delta-G solvation = 74.212085 kcal Electronic energy + Delta-G solvation = -16593.181454 eV Core-core repulsion = 14013.519893 eV Total energy + Delta-G solvation = -2579.661562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60530 -38.14192 -33.40233 -32.43960 -31.43549 -29.67321 -28.74374 -26.98527 -25.52118 -22.61734 -22.05778 -21.49608 -18.98347 -18.55601 -16.73084 -16.34214 -16.15402 -14.76781 -14.44718 -14.38774 -13.70539 -13.10007 -12.92599 -12.55467 -12.33218 -12.22970 -12.14776 -11.92908 -11.61462 -11.45830 -11.30044 -11.08239 -10.96299 -10.67732 -10.47684 -9.89814 -9.34539 -9.25758 -8.68200 -8.40935 -8.31064 -7.20139 -5.92086 -3.94857 2.64579 3.10333 3.34357 3.42118 3.46899 3.82415 4.08980 4.50853 4.53982 4.62930 4.90718 5.02202 5.12536 5.34094 5.40861 5.46601 5.61044 5.66866 5.72926 5.82435 5.89490 6.07572 6.08664 6.47940 6.57573 6.65809 6.77121 7.10620 7.16706 7.55770 7.70427 7.86216 7.96713 8.05468 8.51696 8.60988 9.11402 9.68383 11.16801 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042434 B = 0.005817 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.695137 B = 4812.238236 C = 4913.384067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.049 3.951 3 C -0.179 4.179 4 C 0.086 3.914 5 C -0.502 4.502 6 H 0.053 0.947 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.036 3.964 14 N -0.288 5.288 15 N -0.376 5.376 16 C 0.164 3.836 17 H 0.102 0.898 18 C -0.133 4.133 19 C 0.040 3.960 20 N -0.650 5.650 21 C 0.033 3.967 22 H 0.065 0.935 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.259 0.741 28 H 0.173 0.827 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.334 0.666 34 H 0.048 0.952 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -17.274 -2.115 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.189 4.189 4 C 0.048 3.952 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.150 4.150 14 N -0.108 5.108 15 N -0.162 5.162 16 C 0.060 3.940 17 H 0.120 0.880 18 C -0.172 4.172 19 C -0.089 4.089 20 N -0.279 5.279 21 C -0.097 4.097 22 H 0.084 0.916 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.190 0.810 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.149 0.851 34 H 0.066 0.934 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.745 -17.665 -1.950 17.788 hybrid contribution -1.263 0.371 0.821 1.552 sum -0.518 -17.294 -1.130 17.339 Atomic orbital electron populations 1.20327 0.88354 1.03341 1.02015 1.20717 0.94110 0.86906 1.05664 1.20645 0.91455 0.97771 1.09034 1.17644 0.96185 0.84560 0.96820 1.21207 1.43561 0.96661 0.92610 0.92826 1.24998 0.95928 0.96767 0.96737 1.69964 1.47245 1.05938 1.30530 0.86584 0.77749 0.78611 0.85365 1.19878 1.21071 1.21130 1.23799 0.98253 0.91910 1.01073 1.77325 0.96375 1.12414 1.24729 1.48269 1.04099 1.03872 1.59957 1.21726 0.98138 0.78689 0.95469 0.87994 1.22722 0.99603 0.97684 0.97210 1.22872 0.98613 0.95522 0.91929 1.63682 1.31025 1.30086 1.03085 1.23209 0.91552 0.97733 0.97205 0.91617 0.88567 0.92924 0.95775 0.95921 0.93127 0.81014 0.89493 0.90672 0.90001 0.94374 0.85115 0.93354 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.64 36.01 0.35 -1.02 16 2 C 0.05 0.98 6.93 -82.26 -0.57 0.41 16 3 C -0.18 -4.07 5.29 -105.05 -0.56 -4.63 16 4 C 0.09 2.25 5.01 -29.03 -0.15 2.11 16 5 C -0.50 -14.17 9.09 -34.44 -0.31 -14.48 16 6 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.04 0.76 11.96 -17.36 -0.21 0.55 16 14 N -0.29 -5.86 12.39 30.63 0.38 -5.48 16 15 N -0.38 -6.83 3.21 -49.36 -0.16 -6.99 16 16 C 0.16 2.23 3.84 -66.54 -0.26 1.97 16 17 H 0.10 1.17 6.76 -51.93 -0.35 0.82 16 18 C -0.13 -1.65 6.75 -25.35 -0.17 -1.82 16 19 C 0.04 0.42 7.47 -2.18 -0.02 0.41 16 20 N -0.65 -7.73 7.62 -109.66 -0.84 -8.57 16 21 C 0.03 0.40 7.09 -2.18 -0.02 0.38 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.10 1.81 7.89 -51.93 -0.41 1.40 16 24 H 0.05 0.72 7.14 -51.93 -0.37 0.35 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.61 8.02 -51.93 -0.42 0.20 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.17 3.34 8.06 -52.49 -0.42 2.92 16 29 H 0.09 1.34 7.92 -51.92 -0.41 0.93 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.33 3.11 8.92 -39.29 -0.35 2.76 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -32.19 293.54 -7.70 -39.90 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.23 Total: 0.54 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.00 Total: -14.61 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.12 Total: -46.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.19 -7.70 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.110 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds