Wall clock time and date at job start Mon Mar 30 2020 03:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.12530 * 2 1 4 4 C 1.50702 * 126.04227 * 359.93711 * 3 2 1 5 5 C 1.50706 * 109.46810 * 85.00203 * 4 3 2 6 6 H 1.08002 * 119.99921 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99817 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00550 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99915 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47186 * 119.99756 * 9 7 5 12 12 H 1.48499 * 109.47251 * 239.99757 * 9 7 5 13 13 C 1.39871 * 107.92025 * 179.97438 * 3 2 1 14 14 N 1.30844 * 108.20169 * 359.97438 * 13 3 2 15 15 N 1.34947 * 126.12611 * 179.68721 * 2 1 3 16 16 C 1.46499 * 126.03598 * 0.03440 * 15 2 1 17 17 H 1.08994 * 110.29325 * 2.12799 * 16 15 2 18 18 C 1.54261 * 110.32548 * 239.99784 * 16 15 2 19 19 C 1.54376 * 105.06549 * 241.11135 * 18 16 15 20 20 N 1.48559 * 104.59225 * 23.84926 * 19 18 16 21 21 C 1.48559 * 104.22497 * 320.51690 * 20 19 18 22 22 H 1.09002 * 109.47152 * 90.02603 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02703 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02684 * 1 2 3 25 25 H 1.08990 * 109.47350 * 204.99912 * 4 3 2 26 26 H 1.09002 * 109.47242 * 325.00601 * 4 3 2 27 27 H 0.96998 * 120.00426 * 179.97438 * 8 7 5 28 28 H 1.07998 * 125.90286 * 180.02562 * 13 3 2 29 29 H 1.09014 * 110.32097 * 0.02562 * 18 16 15 30 30 H 1.08994 * 110.32240 * 122.20479 * 18 16 15 31 31 H 1.08998 * 110.41625 * 142.63333 * 19 18 16 32 32 H 1.09003 * 110.40785 * 264.95881 * 19 18 16 33 33 H 1.00908 * 110.99575 * 200.96327 * 20 19 18 34 34 H 1.08995 * 110.41676 * 280.70467 * 21 20 19 35 35 H 1.08997 * 110.41156 * 158.25896 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 -0.0013 5 6 1.5704 2.9687 1.4136 6 1 1.7169 2.2793 2.2320 7 6 1.1336 4.2524 1.6634 8 7 0.9547 5.0918 0.6669 9 14 0.7961 4.7995 3.4173 10 1 1.0732 3.6761 4.3482 11 1 1.6733 5.9492 3.7548 12 1 -0.6260 5.2081 3.5433 13 6 3.6335 0.6560 0.0006 14 7 3.6334 -0.6524 0.0015 15 7 2.3026 -1.0900 0.0060 16 6 1.8539 -2.4845 0.0129 17 1 0.7656 -2.5316 -0.0254 18 6 2.3777 -3.2098 1.2696 19 6 3.2644 -4.3536 0.7324 20 7 3.6821 -3.9002 -0.6192 21 6 2.4681 -3.2514 -1.1780 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 2.6189 3.1584 -0.4353 26 1 0.9311 2.6153 -0.5916 27 1 0.6471 5.9947 0.8426 28 1 4.5084 1.2891 0.0011 29 1 2.9684 -2.5279 1.8816 30 1 1.5466 -3.6142 1.8472 31 1 4.1353 -4.4924 1.3729 32 1 2.6918 -5.2787 0.6649 33 1 3.9698 -4.6812 -1.1897 34 1 1.7705 -4.0034 -1.5464 35 1 2.7396 -2.5601 -1.9758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:42 Heat of formation + Delta-G solvation = 51.723285 kcal Electronic energy + Delta-G solvation = -16594.156642 eV Core-core repulsion = 14013.519893 eV Total energy + Delta-G solvation = -2580.636749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11354 -39.16020 -35.43299 -33.83387 -33.16077 -30.88608 -30.04543 -28.37113 -27.30067 -24.56697 -23.33529 -22.45830 -20.39401 -20.03598 -18.39711 -17.73931 -17.55550 -16.48809 -15.98325 -15.61201 -14.90214 -14.60302 -14.38881 -14.09464 -13.98955 -13.54102 -13.30330 -13.21007 -13.05110 -12.85959 -12.70193 -12.61931 -12.46845 -12.36042 -11.96058 -11.75418 -11.44004 -11.09489 -10.51125 -9.94491 -9.45771 -8.90845 -8.08713 -6.22168 1.09475 1.41188 1.42555 1.55075 1.75395 2.09648 2.48477 3.18931 3.22521 3.58373 3.61908 3.84498 4.00664 4.16374 4.23363 4.36077 4.44336 4.56270 4.72807 4.76793 4.78667 4.91081 4.93596 5.01751 5.11466 5.19293 5.39331 5.47407 5.74501 5.82665 5.86905 5.94678 6.33347 6.43840 6.46740 6.90331 6.99990 7.45632 8.98227 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042434 B = 0.005817 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.695137 B = 4812.238236 C = 4913.384067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.061 3.939 3 C -0.224 4.224 4 C 0.101 3.899 5 C -0.514 4.514 6 H 0.045 0.955 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.020 3.980 14 N -0.296 5.296 15 N -0.362 5.362 16 C 0.145 3.855 17 H 0.133 0.867 18 C -0.132 4.132 19 C 0.046 3.954 20 N -0.676 5.676 21 C 0.040 3.960 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.091 0.909 25 H -0.006 1.006 26 H 0.003 0.997 27 H 0.263 0.737 28 H 0.177 0.823 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.348 0.652 34 H 0.087 0.913 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -19.760 -1.281 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.235 4.235 4 C 0.063 3.937 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.200 1.200 13 C -0.165 4.165 14 N -0.118 5.118 15 N -0.147 5.147 16 C 0.043 3.957 17 H 0.150 0.850 18 C -0.171 4.171 19 C -0.083 4.083 20 N -0.307 5.307 21 C -0.090 4.090 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.012 0.988 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.194 0.806 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.530 -20.194 -1.122 20.232 hybrid contribution -0.863 1.036 0.518 1.444 sum -1.393 -19.158 -0.604 19.218 Atomic orbital electron populations 1.20394 0.85886 1.03913 1.03560 1.21089 0.95610 0.86665 1.03140 1.20423 0.92862 0.96899 1.13281 1.17291 0.94232 0.86685 0.95456 1.21419 1.43680 0.96928 0.93253 0.93647 1.25834 0.95524 0.96729 1.01093 1.70082 1.47902 1.06393 1.32818 0.85494 0.78003 0.78097 0.79999 1.19440 1.20557 1.19973 1.23886 0.98149 0.92549 1.01915 1.77262 0.98001 1.11618 1.24875 1.48638 1.03003 1.05439 1.57650 1.22384 1.00067 0.76179 0.97084 0.84978 1.22729 1.00448 0.97506 0.96377 1.22865 0.98563 0.95993 0.90893 1.63602 1.31563 1.31423 1.04088 1.23123 0.92313 0.97944 0.95624 0.89515 0.91183 0.89061 0.98758 0.97846 0.92784 0.80572 0.93158 0.87682 0.90479 0.91047 0.83486 0.89483 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.50 9.64 71.24 0.69 -1.81 16 2 C 0.06 2.40 6.93 41.41 0.29 2.69 16 3 C -0.22 -10.55 5.29 -20.14 -0.11 -10.65 16 4 C 0.10 5.59 5.01 29.10 0.15 5.73 16 5 C -0.51 -29.90 9.09 25.60 0.23 -29.66 16 6 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.54 13.29 21.44 0.28 -56.25 16 9 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.02 0.88 11.96 85.24 1.02 1.90 16 14 N -0.30 -12.15 12.39 -57.02 -0.71 -12.85 16 15 N -0.36 -12.75 3.21 -310.08 -0.99 -13.75 16 16 C 0.14 3.49 3.84 45.89 0.18 3.66 16 17 H 0.13 2.39 6.76 -2.39 -0.02 2.37 16 18 C -0.13 -2.87 6.75 31.49 0.21 -2.66 16 19 C 0.05 0.82 7.47 86.45 0.65 1.46 16 20 N -0.68 -14.35 7.62 -500.86 -3.82 -18.17 16 21 C 0.04 0.84 7.09 86.45 0.61 1.45 16 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.07 2.62 7.89 -2.39 -0.02 2.60 16 24 H 0.09 2.14 7.14 -2.38 -0.02 2.12 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.00 0.19 8.02 -2.39 -0.02 0.17 16 27 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.18 7.28 8.06 -2.91 -0.02 7.25 16 29 H 0.05 1.49 7.92 -2.38 -0.02 1.47 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.35 5.51 8.92 -89.69 -0.80 4.71 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.66 8.05 -2.39 -0.02 1.64 16 Total: -1.00 -71.81 293.54 1.44 -70.37 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.28 Total: 10.80 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.37 Total: -27.10 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -5.23 Total: -101.02 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.81 1.44 -70.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.092 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds