Wall clock time and date at job start Mon Mar 30 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46841 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47109 * 299.99821 * 3 2 1 6 6 H 1.48499 * 109.46904 * 60.00049 * 3 2 1 7 7 C 1.37881 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.39871 * 126.03643 * 270.00223 * 10 9 7 12 12 N 1.30843 * 108.20167 * 179.74262 * 11 10 9 13 13 N 1.40086 * 108.20352 * 0.39765 * 12 11 10 14 14 C 1.46494 * 126.03704 * 179.85977 * 13 12 11 15 15 C 1.53123 * 109.52258 * 264.68927 * 14 13 12 16 16 C 1.53039 * 109.31189 * 182.46297 * 15 14 13 17 17 N 1.46842 * 109.52266 * 59.15550 * 16 15 14 18 18 C 1.46849 * 111.20050 * 298.25785 * 17 16 15 19 19 C 1.53036 * 109.52274 * 61.74759 * 18 17 16 20 20 C 1.34955 * 107.92684 * 359.59545 * 13 12 11 21 21 H 0.96994 * 120.00252 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47834 * 59.99869 * 9 7 2 23 23 H 1.08996 * 109.47237 * 299.99611 * 9 7 2 24 24 H 1.07999 * 125.90058 * 359.97438 * 11 10 9 25 25 H 1.09000 * 109.57526 * 24.84529 * 14 13 12 26 26 H 1.09002 * 109.50371 * 62.49847 * 15 14 13 27 27 H 1.09003 * 109.50070 * 302.42006 * 15 14 13 28 28 H 1.08995 * 109.46501 * 179.17754 * 16 15 14 29 29 H 1.09009 * 109.45500 * 299.14277 * 16 15 14 30 30 H 1.00898 * 111.00242 * 62.36287 * 17 16 15 31 31 H 1.09001 * 109.46071 * 181.75754 * 18 17 16 32 32 H 1.09002 * 109.46350 * 301.73871 * 18 17 16 33 33 H 1.09000 * 109.50390 * 60.75234 * 19 18 17 34 34 H 1.08997 * 109.50400 * 180.83976 * 19 18 17 35 35 H 1.07990 * 126.12881 * 180.22288 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2304 -3.6446 -0.0015 11 6 2.7661 -4.2695 -1.1324 12 7 3.5794 -5.2128 -0.7314 13 7 3.5800 -5.2239 0.6694 14 6 4.3531 -6.1285 1.5237 15 6 3.4828 -7.3232 1.9237 16 6 4.2746 -8.2334 2.8653 17 7 4.6756 -7.4761 4.0578 18 6 5.5516 -6.3520 3.7032 19 6 4.7979 -5.3856 2.7867 20 6 2.7470 -4.2502 1.0928 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5564 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 2.5490 -4.0147 -2.1592 25 1 5.2302 -6.4821 0.9818 26 1 3.1987 -7.8814 1.0315 27 1 2.5862 -6.9667 2.4308 28 1 3.6523 -9.0772 3.1633 29 1 5.1635 -8.6011 2.3526 30 1 3.8682 -7.1571 4.5720 31 1 5.8566 -5.8294 4.6098 32 1 6.4344 -6.7285 3.1865 33 1 3.9223 -4.9982 3.3076 34 1 5.4532 -4.5591 2.5117 35 1 2.5311 -3.9995 2.1208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:14 Heat of formation + Delta-G solvation = 64.722196 kcal Electronic energy + Delta-G solvation = -16357.420826 eV Core-core repulsion = 13777.347752 eV Total energy + Delta-G solvation = -2580.073074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69316 -38.67494 -33.77321 -32.87893 -31.18472 -30.47246 -29.25510 -26.66429 -23.93817 -23.23248 -22.60821 -21.05821 -19.91381 -19.13347 -16.85354 -16.24146 -15.63869 -14.98004 -14.62054 -14.50878 -14.30070 -14.25148 -13.05772 -12.93171 -12.55136 -12.44199 -12.25012 -12.18015 -11.76168 -11.49932 -11.18411 -10.92224 -10.86736 -10.69064 -10.56400 -10.02890 -9.49779 -9.33850 -8.75954 -8.71002 -8.35717 -7.41002 -5.97021 -3.99990 2.55472 2.96163 3.31783 3.39278 3.43965 3.72736 4.03449 4.37679 4.50054 4.59320 4.79184 4.88101 5.06506 5.07962 5.20276 5.36454 5.45484 5.56269 5.62257 5.65649 5.69052 5.74002 5.90306 6.02853 6.42978 6.59634 6.69310 6.92888 7.05785 7.43078 7.60859 7.75096 7.85118 7.99838 8.43256 8.45540 9.05960 9.63552 11.12288 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036360 B = 0.005437 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.890270 B = 5148.764025 C = 5478.733999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.054 0.946 9 C 0.084 3.916 10 C -0.179 4.179 11 C 0.045 3.955 12 N -0.317 5.317 13 N -0.383 5.383 14 C 0.173 3.827 15 C -0.168 4.168 16 C 0.061 3.939 17 N -0.687 5.687 18 C 0.062 3.938 19 C -0.169 4.169 20 C 0.027 3.973 21 H 0.260 0.740 22 H 0.026 0.974 23 H 0.022 0.978 24 H 0.176 0.824 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.344 0.656 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -13.721 6.811 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.046 3.954 10 C -0.189 4.189 11 C -0.140 4.140 12 N -0.138 5.138 13 N -0.167 5.167 14 C 0.070 3.930 15 C -0.209 4.209 16 C -0.069 4.069 17 N -0.315 5.315 18 C -0.068 4.068 19 C -0.210 4.210 20 C -0.116 4.116 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.193 0.807 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.335 -15.041 6.693 18.926 hybrid contribution -0.839 2.415 -0.257 2.569 sum 8.497 -12.626 6.437 16.524 Atomic orbital electron populations 1.69967 1.05973 1.26481 1.51233 1.25011 0.94824 0.99093 0.95513 0.86548 0.80129 0.83863 0.77561 1.19845 1.20989 1.21076 1.21210 0.93013 0.90292 1.49919 0.92759 1.17663 0.91645 0.88404 0.97711 1.20922 1.05400 1.02060 0.90541 1.23776 0.95906 0.94194 1.00152 1.77128 1.23964 1.23847 0.88900 1.48472 1.36321 1.27739 1.04212 1.20981 0.93749 0.88638 0.89653 1.22754 0.99497 0.97137 1.01501 1.22024 0.99298 0.95893 0.89716 1.60647 1.22872 1.25656 1.22370 1.22016 0.95987 0.90231 0.98561 1.22698 1.02197 1.00018 0.96054 1.22074 0.96508 0.93010 0.99961 0.93053 0.95563 0.95974 0.80734 0.88878 0.90561 0.91217 0.90106 0.90577 0.83872 0.89842 0.90533 0.90684 0.90174 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.08 2.19 5.46 -29.03 -0.16 2.03 16 10 C -0.18 -4.01 5.29 -105.05 -0.56 -4.56 16 11 C 0.05 0.94 11.96 -17.36 -0.21 0.74 16 12 N -0.32 -6.32 12.58 30.63 0.39 -5.94 16 13 N -0.38 -6.76 3.53 -54.74 -0.19 -6.95 16 14 C 0.17 2.25 3.27 -67.80 -0.22 2.02 16 15 C -0.17 -1.85 5.68 -26.65 -0.15 -2.00 16 16 C 0.06 0.52 6.55 -3.84 -0.03 0.50 16 17 N -0.69 -5.93 6.87 -113.81 -0.78 -6.71 16 18 C 0.06 0.54 6.55 -3.83 -0.03 0.51 16 19 C -0.17 -1.86 5.05 -26.65 -0.13 -1.99 16 20 C 0.03 0.53 10.50 -17.22 -0.18 0.35 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.18 3.28 8.06 -52.49 -0.42 2.86 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 30 H 0.34 2.73 8.86 -39.29 -0.35 2.38 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.85 7.04 -51.93 -0.37 0.48 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.16 2.78 7.20 -52.49 -0.38 2.41 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -31.53 290.62 -7.85 -39.38 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.28 Total: 0.64 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.07 Total: -15.55 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.15 Total: -45.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.53 -7.85 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.105 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds