Wall clock time and date at job start Mon Mar 30 2020 03:12:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86801 * 119.99765 * 2 1
4 4 H 1.48502 * 109.46841 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47109 * 299.99821 * 3 2 1
6 6 H 1.48499 * 109.46904 * 60.00049 * 3 2 1
7 7 C 1.37881 * 120.00031 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99784 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99828 * 0.02562 * 7 2 1
10 10 C 1.50705 * 109.46953 * 180.02562 * 9 7 2
11 11 C 1.39871 * 126.03643 * 270.00223 * 10 9 7
12 12 N 1.30843 * 108.20167 * 179.74262 * 11 10 9
13 13 N 1.40086 * 108.20352 * 0.39765 * 12 11 10
14 14 C 1.46494 * 126.03704 * 179.85977 * 13 12 11
15 15 C 1.53123 * 109.52258 * 264.68927 * 14 13 12
16 16 C 1.53039 * 109.31189 * 182.46297 * 15 14 13
17 17 N 1.46842 * 109.52266 * 59.15550 * 16 15 14
18 18 C 1.46849 * 111.20050 * 298.25785 * 17 16 15
19 19 C 1.53036 * 109.52274 * 61.74759 * 18 17 16
20 20 C 1.34955 * 107.92684 * 359.59545 * 13 12 11
21 21 H 0.96994 * 120.00252 * 0.02562 * 1 2 3
22 22 H 1.08997 * 109.47834 * 59.99869 * 9 7 2
23 23 H 1.08996 * 109.47237 * 299.99611 * 9 7 2
24 24 H 1.07999 * 125.90058 * 359.97438 * 11 10 9
25 25 H 1.09000 * 109.57526 * 24.84529 * 14 13 12
26 26 H 1.09002 * 109.50371 * 62.49847 * 15 14 13
27 27 H 1.09003 * 109.50070 * 302.42006 * 15 14 13
28 28 H 1.08995 * 109.46501 * 179.17754 * 16 15 14
29 29 H 1.09009 * 109.45500 * 299.14277 * 16 15 14
30 30 H 1.00898 * 111.00242 * 62.36287 * 17 16 15
31 31 H 1.09001 * 109.46071 * 181.75754 * 18 17 16
32 32 H 1.09002 * 109.46350 * 301.73871 * 18 17 16
33 33 H 1.09000 * 109.50390 * 60.75234 * 19 18 17
34 34 H 1.08997 * 109.50400 * 180.83976 * 19 18 17
35 35 H 1.07990 * 126.12881 * 180.22288 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8903 2.3964 1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0017
10 6 2.2304 -3.6446 -0.0015
11 6 2.7661 -4.2695 -1.1324
12 7 3.5794 -5.2128 -0.7314
13 7 3.5800 -5.2239 0.6694
14 6 4.3531 -6.1285 1.5237
15 6 3.4828 -7.3232 1.9237
16 6 4.2746 -8.2334 2.8653
17 7 4.6756 -7.4761 4.0578
18 6 5.5516 -6.3520 3.7032
19 6 4.7979 -5.3856 2.7867
20 6 2.7470 -4.2502 1.0928
21 1 -0.4850 0.8400 -0.0004
22 1 0.6247 -2.5564 -0.8919
23 1 0.6242 -2.5575 0.8880
24 1 2.5490 -4.0147 -2.1592
25 1 5.2302 -6.4821 0.9818
26 1 3.1987 -7.8814 1.0315
27 1 2.5862 -6.9667 2.4308
28 1 3.6523 -9.0772 3.1633
29 1 5.1635 -8.6011 2.3526
30 1 3.8682 -7.1571 4.5720
31 1 5.8566 -5.8294 4.6098
32 1 6.4344 -6.7285 3.1865
33 1 3.9223 -4.9982 3.3076
34 1 5.4532 -4.5591 2.5117
35 1 2.5311 -3.9995 2.1208
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260686878.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:14
Heat of formation + Delta-G solvation = 64.722196 kcal
Electronic energy + Delta-G solvation = -16357.420826 eV
Core-core repulsion = 13777.347752 eV
Total energy + Delta-G solvation = -2580.073074 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.69316 -38.67494 -33.77321 -32.87893 -31.18472 -30.47246 -29.25510 -26.66429
-23.93817 -23.23248 -22.60821 -21.05821 -19.91381 -19.13347 -16.85354 -16.24146
-15.63869 -14.98004 -14.62054 -14.50878 -14.30070 -14.25148 -13.05772 -12.93171
-12.55136 -12.44199 -12.25012 -12.18015 -11.76168 -11.49932 -11.18411 -10.92224
-10.86736 -10.69064 -10.56400 -10.02890 -9.49779 -9.33850 -8.75954 -8.71002
-8.35717 -7.41002 -5.97021 -3.99990 2.55472 2.96163 3.31783 3.39278
3.43965 3.72736 4.03449 4.37679 4.50054 4.59320 4.79184 4.88101
5.06506 5.07962 5.20276 5.36454 5.45484 5.56269 5.62257 5.65649
5.69052 5.74002 5.90306 6.02853 6.42978 6.59634 6.69310 6.92888
7.05785 7.43078 7.60859 7.75096 7.85118 7.99838 8.43256 8.45540
9.05960 9.63552 11.12288
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.036360 B = 0.005437 C = 0.005109
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 769.890270 B = 5148.764025 C = 5478.733999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.056 3.944
3 Si 0.891 3.109
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.285 1.285
7 C -0.506 4.506
8 H 0.054 0.946
9 C 0.084 3.916
10 C -0.179 4.179
11 C 0.045 3.955
12 N -0.317 5.317
13 N -0.383 5.383
14 C 0.173 3.827
15 C -0.168 4.168
16 C 0.061 3.939
17 N -0.687 5.687
18 C 0.062 3.938
19 C -0.169 4.169
20 C 0.027 3.973
21 H 0.260 0.740
22 H 0.026 0.974
23 H 0.022 0.978
24 H 0.176 0.824
25 H 0.093 0.907
26 H 0.076 0.924
27 H 0.069 0.931
28 H 0.081 0.919
29 H 0.076 0.924
30 H 0.344 0.656
31 H 0.083 0.917
32 H 0.076 0.924
33 H 0.075 0.925
34 H 0.080 0.920
35 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.082 -13.721 6.811 17.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.144 4.144
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.211 1.211
7 C -0.544 4.544
8 H 0.072 0.928
9 C 0.046 3.954
10 C -0.189 4.189
11 C -0.140 4.140
12 N -0.138 5.138
13 N -0.167 5.167
14 C 0.070 3.930
15 C -0.209 4.209
16 C -0.069 4.069
17 N -0.315 5.315
18 C -0.068 4.068
19 C -0.210 4.210
20 C -0.116 4.116
21 H 0.069 0.931
22 H 0.044 0.956
23 H 0.040 0.960
24 H 0.193 0.807
25 H 0.111 0.889
26 H 0.094 0.906
27 H 0.088 0.912
28 H 0.099 0.901
29 H 0.094 0.906
30 H 0.161 0.839
31 H 0.102 0.898
32 H 0.095 0.905
33 H 0.093 0.907
34 H 0.098 0.902
35 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 9.335 -15.041 6.693 18.926
hybrid contribution -0.839 2.415 -0.257 2.569
sum 8.497 -12.626 6.437 16.524
Atomic orbital electron populations
1.69967 1.05973 1.26481 1.51233 1.25011 0.94824 0.99093 0.95513
0.86548 0.80129 0.83863 0.77561 1.19845 1.20989 1.21076 1.21210
0.93013 0.90292 1.49919 0.92759 1.17663 0.91645 0.88404 0.97711
1.20922 1.05400 1.02060 0.90541 1.23776 0.95906 0.94194 1.00152
1.77128 1.23964 1.23847 0.88900 1.48472 1.36321 1.27739 1.04212
1.20981 0.93749 0.88638 0.89653 1.22754 0.99497 0.97137 1.01501
1.22024 0.99298 0.95893 0.89716 1.60647 1.22872 1.25656 1.22370
1.22016 0.95987 0.90231 0.98561 1.22698 1.02197 1.00018 0.96054
1.22074 0.96508 0.93010 0.99961 0.93053 0.95563 0.95974 0.80734
0.88878 0.90561 0.91217 0.90106 0.90577 0.83872 0.89842 0.90533
0.90684 0.90174 0.82276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16
2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16
4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
7 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
9 C 0.08 2.19 5.46 -29.03 -0.16 2.03 16
10 C -0.18 -4.01 5.29 -105.05 -0.56 -4.56 16
11 C 0.05 0.94 11.96 -17.36 -0.21 0.74 16
12 N -0.32 -6.32 12.58 30.63 0.39 -5.94 16
13 N -0.38 -6.76 3.53 -54.74 -0.19 -6.95 16
14 C 0.17 2.25 3.27 -67.80 -0.22 2.02 16
15 C -0.17 -1.85 5.68 -26.65 -0.15 -2.00 16
16 C 0.06 0.52 6.55 -3.84 -0.03 0.50 16
17 N -0.69 -5.93 6.87 -113.81 -0.78 -6.71 16
18 C 0.06 0.54 6.55 -3.83 -0.03 0.51 16
19 C -0.17 -1.86 5.05 -26.65 -0.13 -1.99 16
20 C 0.03 0.53 10.50 -17.22 -0.18 0.35 16
21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
22 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16
23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16
24 H 0.18 3.28 8.06 -52.49 -0.42 2.86 16
25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16
26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16
30 H 0.34 2.73 8.86 -39.29 -0.35 2.38 16
31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.07 0.85 7.04 -51.93 -0.37 0.48 16
34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
35 H 0.16 2.78 7.20 -52.49 -0.38 2.41 16
LS Contribution 290.62 15.07 4.38 4.38
Total: -1.00 -31.53 290.62 -7.85 -39.38
By element:
Atomic # 1 Polarization: 5.92 SS G_CDS: -5.28 Total: 0.64 kcal
Atomic # 6 Polarization: -13.48 SS G_CDS: -2.07 Total: -15.55 kcal
Atomic # 7 Polarization: -45.70 SS G_CDS: 0.15 Total: -45.55 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -31.53 -7.85 -39.38 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260686878.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.105 kcal
(2) G-P(sol) polarization free energy of solvation -31.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.571 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds