Wall clock time and date at job start Mon Mar 30 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46841 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47109 * 299.99821 * 3 2 1 6 6 H 1.48499 * 109.46904 * 60.00049 * 3 2 1 7 7 C 1.37881 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.39871 * 126.03643 * 270.00223 * 10 9 7 12 12 N 1.30843 * 108.20167 * 179.74262 * 11 10 9 13 13 N 1.40086 * 108.20352 * 0.39765 * 12 11 10 14 14 C 1.46494 * 126.03704 * 179.85977 * 13 12 11 15 15 C 1.53123 * 109.52258 * 264.68927 * 14 13 12 16 16 C 1.53039 * 109.31189 * 182.46297 * 15 14 13 17 17 N 1.46842 * 109.52266 * 59.15550 * 16 15 14 18 18 C 1.46849 * 111.20050 * 298.25785 * 17 16 15 19 19 C 1.53036 * 109.52274 * 61.74759 * 18 17 16 20 20 C 1.34955 * 107.92684 * 359.59545 * 13 12 11 21 21 H 0.96994 * 120.00252 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47834 * 59.99869 * 9 7 2 23 23 H 1.08996 * 109.47237 * 299.99611 * 9 7 2 24 24 H 1.07999 * 125.90058 * 359.97438 * 11 10 9 25 25 H 1.09000 * 109.57526 * 24.84529 * 14 13 12 26 26 H 1.09002 * 109.50371 * 62.49847 * 15 14 13 27 27 H 1.09003 * 109.50070 * 302.42006 * 15 14 13 28 28 H 1.08995 * 109.46501 * 179.17754 * 16 15 14 29 29 H 1.09009 * 109.45500 * 299.14277 * 16 15 14 30 30 H 1.00898 * 111.00242 * 62.36287 * 17 16 15 31 31 H 1.09001 * 109.46071 * 181.75754 * 18 17 16 32 32 H 1.09002 * 109.46350 * 301.73871 * 18 17 16 33 33 H 1.09000 * 109.50390 * 60.75234 * 19 18 17 34 34 H 1.08997 * 109.50400 * 180.83976 * 19 18 17 35 35 H 1.07990 * 126.12881 * 180.22288 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2304 -3.6446 -0.0015 11 6 2.7661 -4.2695 -1.1324 12 7 3.5794 -5.2128 -0.7314 13 7 3.5800 -5.2239 0.6694 14 6 4.3531 -6.1285 1.5237 15 6 3.4828 -7.3232 1.9237 16 6 4.2746 -8.2334 2.8653 17 7 4.6756 -7.4761 4.0578 18 6 5.5516 -6.3520 3.7032 19 6 4.7979 -5.3856 2.7867 20 6 2.7470 -4.2502 1.0928 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5564 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 2.5490 -4.0147 -2.1592 25 1 5.2302 -6.4821 0.9818 26 1 3.1987 -7.8814 1.0315 27 1 2.5862 -6.9667 2.4308 28 1 3.6523 -9.0772 3.1633 29 1 5.1635 -8.6011 2.3526 30 1 3.8682 -7.1571 4.5720 31 1 5.8566 -5.8294 4.6098 32 1 6.4344 -6.7285 3.1865 33 1 3.9223 -4.9982 3.3076 34 1 5.4532 -4.5591 2.5117 35 1 2.5311 -3.9995 2.1208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:14 Heat of formation + Delta-G solvation = 43.538037 kcal Electronic energy + Delta-G solvation = -16358.339440 eV Core-core repulsion = 13777.347752 eV Total energy + Delta-G solvation = -2580.991688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17024 -39.61785 -35.54076 -34.38963 -32.37761 -31.93960 -30.56072 -28.48998 -25.40772 -24.31269 -23.93514 -22.20633 -21.31867 -20.57687 -18.47734 -18.02338 -16.77706 -16.35243 -15.82484 -15.77508 -15.52853 -15.34975 -14.46893 -14.28417 -14.08160 -13.91823 -13.69237 -13.32156 -13.10169 -12.93434 -12.69811 -12.49996 -12.29988 -11.97968 -11.79381 -11.63479 -11.46169 -11.29580 -10.55260 -10.21173 -9.49668 -9.10276 -8.13682 -6.26867 1.00110 1.40256 1.41133 1.53872 1.63046 2.01673 2.45806 3.15301 3.32773 3.38495 3.65820 3.93071 3.94592 4.00313 4.07152 4.28907 4.42310 4.43159 4.61527 4.78493 4.82674 4.86434 4.92510 4.93634 5.04968 5.15074 5.18157 5.41052 5.74407 5.80681 5.84021 5.99176 6.22461 6.31650 6.42134 6.83970 6.85944 7.41450 8.94332 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036360 B = 0.005437 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.890270 B = 5148.764025 C = 5478.733999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.048 0.952 9 C 0.096 3.904 10 C -0.218 4.218 11 C 0.035 3.965 12 N -0.325 5.325 13 N -0.370 5.370 14 C 0.160 3.840 15 C -0.159 4.159 16 C 0.069 3.931 17 N -0.686 5.686 18 C 0.070 3.930 19 C -0.162 4.162 20 C 0.044 3.956 21 H 0.264 0.736 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.185 0.815 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.349 0.651 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 -14.282 8.105 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.058 3.942 10 C -0.229 4.229 11 C -0.149 4.149 12 N -0.147 5.147 13 N -0.153 5.153 14 C 0.060 3.940 15 C -0.200 4.200 16 C -0.061 4.061 17 N -0.315 5.315 18 C -0.060 4.060 19 C -0.203 4.203 20 C -0.101 4.101 21 H 0.073 0.927 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.202 0.798 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.962 -15.636 7.993 20.701 hybrid contribution -1.322 2.495 -0.609 2.888 sum 9.640 -13.141 7.385 17.893 Atomic orbital electron populations 1.70081 1.07544 1.27688 1.51857 1.25868 0.95687 1.02812 0.94875 0.85453 0.78782 0.79187 0.77934 1.19354 1.20308 1.20096 1.21473 0.92833 0.91637 1.50095 0.93379 1.17340 0.91803 0.89596 0.95427 1.20662 1.06956 1.02783 0.92515 1.23897 0.96163 0.94407 1.00466 1.77081 1.23789 1.23550 0.90287 1.48886 1.35336 1.27256 1.03864 1.21495 0.93797 0.88909 0.89848 1.22702 0.99227 0.96423 1.01600 1.22027 0.99407 0.95599 0.89084 1.60671 1.23173 1.25527 1.22114 1.22026 0.95718 0.89710 0.98579 1.22700 1.02166 1.00144 0.95288 1.22225 0.95473 0.92336 1.00089 0.92686 0.98069 0.98020 0.79802 0.88463 0.91584 0.91800 0.88586 0.89929 0.83265 0.88366 0.89901 0.90898 0.91169 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.52 -30.15 9.09 25.60 0.23 -29.91 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 9 C 0.10 5.23 5.46 29.10 0.16 5.39 16 10 C -0.22 -9.98 5.29 -20.14 -0.11 -10.08 16 11 C 0.04 1.49 11.96 85.24 1.02 2.51 16 12 N -0.33 -12.83 12.58 -57.02 -0.72 -13.54 16 13 N -0.37 -12.71 3.53 -327.10 -1.16 -13.86 16 14 C 0.16 3.89 3.27 45.08 0.15 4.04 16 15 C -0.16 -3.19 5.68 30.65 0.17 -3.02 16 16 C 0.07 0.99 6.55 86.33 0.57 1.56 16 17 N -0.69 -9.72 6.87 -514.00 -3.53 -13.25 16 18 C 0.07 1.00 6.55 86.32 0.57 1.57 16 19 C -0.16 -3.23 5.05 30.65 0.15 -3.07 16 20 C 0.04 1.69 10.50 83.54 0.88 2.57 16 21 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 22 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 23 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.19 7.09 8.06 -2.91 -0.02 7.07 16 25 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.35 4.50 8.86 -89.70 -0.79 3.71 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.49 7.04 -2.39 -0.02 1.47 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.18 6.07 7.20 -2.92 -0.02 6.04 16 Total: -1.00 -67.55 290.62 1.44 -66.11 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.28 Total: 11.56 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.25 Total: -27.69 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -5.12 Total: -96.60 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.55 1.44 -66.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.647 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds