Wall clock time and date at job start Mon Mar 30 2020 03:12:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86801 * 119.99765 * 2 1
4 4 H 1.48502 * 109.46841 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47109 * 299.99821 * 3 2 1
6 6 H 1.48499 * 109.46904 * 60.00049 * 3 2 1
7 7 C 1.37881 * 120.00031 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99784 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99828 * 0.02562 * 7 2 1
10 10 C 1.50705 * 109.46953 * 180.02562 * 9 7 2
11 11 C 1.39871 * 126.03643 * 270.00223 * 10 9 7
12 12 N 1.30843 * 108.20167 * 179.74262 * 11 10 9
13 13 N 1.40086 * 108.20352 * 0.39765 * 12 11 10
14 14 C 1.46494 * 126.03704 * 179.85977 * 13 12 11
15 15 C 1.53123 * 109.52258 * 264.68927 * 14 13 12
16 16 C 1.53039 * 109.31189 * 182.46297 * 15 14 13
17 17 N 1.46842 * 109.52266 * 59.15550 * 16 15 14
18 18 C 1.46849 * 111.20050 * 298.25785 * 17 16 15
19 19 C 1.53036 * 109.52274 * 61.74759 * 18 17 16
20 20 C 1.34955 * 107.92684 * 359.59545 * 13 12 11
21 21 H 0.96994 * 120.00252 * 0.02562 * 1 2 3
22 22 H 1.08997 * 109.47834 * 59.99869 * 9 7 2
23 23 H 1.08996 * 109.47237 * 299.99611 * 9 7 2
24 24 H 1.07999 * 125.90058 * 359.97438 * 11 10 9
25 25 H 1.09000 * 109.57526 * 24.84529 * 14 13 12
26 26 H 1.09002 * 109.50371 * 62.49847 * 15 14 13
27 27 H 1.09003 * 109.50070 * 302.42006 * 15 14 13
28 28 H 1.08995 * 109.46501 * 179.17754 * 16 15 14
29 29 H 1.09009 * 109.45500 * 299.14277 * 16 15 14
30 30 H 1.00898 * 111.00242 * 62.36287 * 17 16 15
31 31 H 1.09001 * 109.46071 * 181.75754 * 18 17 16
32 32 H 1.09002 * 109.46350 * 301.73871 * 18 17 16
33 33 H 1.09000 * 109.50390 * 60.75234 * 19 18 17
34 34 H 1.08997 * 109.50400 * 180.83976 * 19 18 17
35 35 H 1.07990 * 126.12881 * 180.22288 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8903 2.3964 1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0017
10 6 2.2304 -3.6446 -0.0015
11 6 2.7661 -4.2695 -1.1324
12 7 3.5794 -5.2128 -0.7314
13 7 3.5800 -5.2239 0.6694
14 6 4.3531 -6.1285 1.5237
15 6 3.4828 -7.3232 1.9237
16 6 4.2746 -8.2334 2.8653
17 7 4.6756 -7.4761 4.0578
18 6 5.5516 -6.3520 3.7032
19 6 4.7979 -5.3856 2.7867
20 6 2.7470 -4.2502 1.0928
21 1 -0.4850 0.8400 -0.0004
22 1 0.6247 -2.5564 -0.8919
23 1 0.6242 -2.5575 0.8880
24 1 2.5490 -4.0147 -2.1592
25 1 5.2302 -6.4821 0.9818
26 1 3.1987 -7.8814 1.0315
27 1 2.5862 -6.9667 2.4308
28 1 3.6523 -9.0772 3.1633
29 1 5.1635 -8.6011 2.3526
30 1 3.8682 -7.1571 4.5720
31 1 5.8566 -5.8294 4.6098
32 1 6.4344 -6.7285 3.1865
33 1 3.9223 -4.9982 3.3076
34 1 5.4532 -4.5591 2.5117
35 1 2.5311 -3.9995 2.1208
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260686878.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:14
Heat of formation + Delta-G solvation = 43.538037 kcal
Electronic energy + Delta-G solvation = -16358.339440 eV
Core-core repulsion = 13777.347752 eV
Total energy + Delta-G solvation = -2580.991688 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.17024 -39.61785 -35.54076 -34.38963 -32.37761 -31.93960 -30.56072 -28.48998
-25.40772 -24.31269 -23.93514 -22.20633 -21.31867 -20.57687 -18.47734 -18.02338
-16.77706 -16.35243 -15.82484 -15.77508 -15.52853 -15.34975 -14.46893 -14.28417
-14.08160 -13.91823 -13.69237 -13.32156 -13.10169 -12.93434 -12.69811 -12.49996
-12.29988 -11.97968 -11.79381 -11.63479 -11.46169 -11.29580 -10.55260 -10.21173
-9.49668 -9.10276 -8.13682 -6.26867 1.00110 1.40256 1.41133 1.53872
1.63046 2.01673 2.45806 3.15301 3.32773 3.38495 3.65820 3.93071
3.94592 4.00313 4.07152 4.28907 4.42310 4.43159 4.61527 4.78493
4.82674 4.86434 4.92510 4.93634 5.04968 5.15074 5.18157 5.41052
5.74407 5.80681 5.84021 5.99176 6.22461 6.31650 6.42134 6.83970
6.85944 7.41450 8.94332
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.036360 B = 0.005437 C = 0.005109
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 769.890270 B = 5148.764025 C = 5478.733999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.005 3.995
3 Si 0.961 3.039
4 H -0.269 1.269
5 H -0.277 1.277
6 H -0.275 1.275
7 C -0.522 4.522
8 H 0.048 0.952
9 C 0.096 3.904
10 C -0.218 4.218
11 C 0.035 3.965
12 N -0.325 5.325
13 N -0.370 5.370
14 C 0.160 3.840
15 C -0.159 4.159
16 C 0.069 3.931
17 N -0.686 5.686
18 C 0.070 3.930
19 C -0.162 4.162
20 C 0.044 3.956
21 H 0.264 0.736
22 H 0.001 0.999
23 H 0.001 0.999
24 H 0.185 0.815
25 H 0.097 0.903
26 H 0.065 0.935
27 H 0.063 0.937
28 H 0.096 0.904
29 H 0.082 0.918
30 H 0.349 0.651
31 H 0.098 0.902
32 H 0.083 0.917
33 H 0.072 0.928
34 H 0.070 0.930
35 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.689 -14.282 8.105 19.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.192 4.192
3 Si 0.786 3.214
4 H -0.194 1.194
5 H -0.203 1.203
6 H -0.201 1.201
7 C -0.560 4.560
8 H 0.066 0.934
9 C 0.058 3.942
10 C -0.229 4.229
11 C -0.149 4.149
12 N -0.147 5.147
13 N -0.153 5.153
14 C 0.060 3.940
15 C -0.200 4.200
16 C -0.061 4.061
17 N -0.315 5.315
18 C -0.060 4.060
19 C -0.203 4.203
20 C -0.101 4.101
21 H 0.073 0.927
22 H 0.019 0.981
23 H 0.020 0.980
24 H 0.202 0.798
25 H 0.115 0.885
26 H 0.084 0.916
27 H 0.082 0.918
28 H 0.114 0.886
29 H 0.101 0.899
30 H 0.167 0.833
31 H 0.116 0.884
32 H 0.101 0.899
33 H 0.091 0.909
34 H 0.088 0.912
35 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 10.962 -15.636 7.993 20.701
hybrid contribution -1.322 2.495 -0.609 2.888
sum 9.640 -13.141 7.385 17.893
Atomic orbital electron populations
1.70081 1.07544 1.27688 1.51857 1.25868 0.95687 1.02812 0.94875
0.85453 0.78782 0.79187 0.77934 1.19354 1.20308 1.20096 1.21473
0.92833 0.91637 1.50095 0.93379 1.17340 0.91803 0.89596 0.95427
1.20662 1.06956 1.02783 0.92515 1.23897 0.96163 0.94407 1.00466
1.77081 1.23789 1.23550 0.90287 1.48886 1.35336 1.27256 1.03864
1.21495 0.93797 0.88909 0.89848 1.22702 0.99227 0.96423 1.01600
1.22027 0.99407 0.95599 0.89084 1.60671 1.23173 1.25527 1.22114
1.22026 0.95718 0.89710 0.98579 1.22700 1.02166 1.00144 0.95288
1.22225 0.95473 0.92336 1.00089 0.92686 0.98069 0.98020 0.79802
0.88463 0.91584 0.91800 0.88586 0.89929 0.83265 0.88366 0.89901
0.90898 0.91169 0.80394
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16
2 C 0.01 0.30 5.46 84.65 0.46 0.77 16
3 Si 0.96 44.60 29.54 68.60 2.03 46.62 16
4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
7 C -0.52 -30.15 9.09 25.60 0.23 -29.91 16
8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16
9 C 0.10 5.23 5.46 29.10 0.16 5.39 16
10 C -0.22 -9.98 5.29 -20.14 -0.11 -10.08 16
11 C 0.04 1.49 11.96 85.24 1.02 2.51 16
12 N -0.33 -12.83 12.58 -57.02 -0.72 -13.54 16
13 N -0.37 -12.71 3.53 -327.10 -1.16 -13.86 16
14 C 0.16 3.89 3.27 45.08 0.15 4.04 16
15 C -0.16 -3.19 5.68 30.65 0.17 -3.02 16
16 C 0.07 0.99 6.55 86.33 0.57 1.56 16
17 N -0.69 -9.72 6.87 -514.00 -3.53 -13.25 16
18 C 0.07 1.00 6.55 86.32 0.57 1.57 16
19 C -0.16 -3.23 5.05 30.65 0.15 -3.07 16
20 C 0.04 1.69 10.50 83.54 0.88 2.57 16
21 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16
22 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
23 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16
24 H 0.19 7.09 8.06 -2.91 -0.02 7.07 16
25 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16
26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
29 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16
30 H 0.35 4.50 8.86 -89.70 -0.79 3.71 16
31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.07 1.49 7.04 -2.39 -0.02 1.47 16
34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
35 H 0.18 6.07 7.20 -2.92 -0.02 6.04 16
Total: -1.00 -67.55 290.62 1.44 -66.11
By element:
Atomic # 1 Polarization: 11.28 SS G_CDS: 0.28 Total: 11.56 kcal
Atomic # 6 Polarization: -31.94 SS G_CDS: 4.25 Total: -27.69 kcal
Atomic # 7 Polarization: -91.48 SS G_CDS: -5.12 Total: -96.60 kcal
Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal
Total: -67.55 1.44 -66.11 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260686878.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.647 kcal
(2) G-P(sol) polarization free energy of solvation -67.549 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds