Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46986 * 269.99975 * 3 2 1 5 5 H 1.48495 * 109.47345 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.47173 * 150.00366 * 3 2 1 7 7 C 1.37881 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46697 * 180.02562 * 9 7 2 11 11 C 1.35349 * 126.90864 * 85.02604 * 10 9 7 12 12 N 1.33776 * 106.49589 * 179.73311 * 11 10 9 13 13 N 1.28634 * 108.88224 * 0.26432 * 12 11 10 14 14 N 1.28722 * 110.18245 * 359.97438 * 13 12 11 15 15 C 1.46498 * 125.87079 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.47293 * 89.97287 * 15 14 13 17 17 C 1.54272 * 110.03340 * 292.16580 * 16 15 14 18 18 C 1.54886 * 104.19554 * 217.10891 * 17 16 15 19 19 C 1.54886 * 102.75120 * 37.93961 * 18 17 16 20 20 C 1.53874 * 110.03178 * 175.00130 * 16 15 14 21 21 H 0.97000 * 120.00552 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47346 * 60.00288 * 9 7 2 23 23 H 1.09000 * 109.47113 * 299.99632 * 9 7 2 24 24 H 1.08002 * 126.75754 * 0.02562 * 11 10 9 25 25 H 1.09004 * 109.47089 * 209.97499 * 15 14 13 26 26 H 1.09001 * 109.46981 * 329.96731 * 15 14 13 27 27 H 1.08992 * 110.01940 * 53.60846 * 16 15 14 28 28 H 1.09000 * 110.48384 * 335.78303 * 17 16 15 29 29 H 1.08992 * 110.48715 * 98.42497 * 17 16 15 30 30 H 1.09004 * 110.75757 * 279.62906 * 18 17 16 31 31 H 1.08997 * 110.91586 * 156.33010 * 18 17 16 32 32 H 1.09000 * 110.49133 * 203.38062 * 19 18 17 33 33 H 1.09003 * 110.48555 * 80.73726 * 19 18 17 34 34 H 1.09004 * 110.03280 * 238.57049 * 20 16 15 35 35 H 1.09004 * 110.03058 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.8300 -4.2014 1.0776 12 7 3.6095 -5.1844 0.6133 13 7 3.5041 -5.2294 -0.6679 14 7 2.6894 -4.3214 -1.0786 15 6 2.3182 -4.0682 -2.4730 16 6 1.0924 -4.9090 -2.8352 17 6 1.4640 -6.4063 -2.8493 18 6 0.6458 -6.9895 -4.0280 19 6 0.7142 -5.8588 -5.0843 20 6 0.6157 -4.5610 -4.2562 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.7006 -3.9124 2.1102 25 1 2.0844 -3.0112 -2.6006 26 1 3.1492 -4.3377 -3.1248 27 1 0.2915 -4.7292 -2.1181 28 1 2.5320 -6.5326 -3.0270 29 1 1.1736 -6.8803 -1.9118 30 1 -0.3855 -7.1756 -3.7277 31 1 1.1064 -7.9014 -4.4079 32 1 -0.1234 -5.9333 -5.7778 33 1 1.6611 -5.8967 -5.6229 34 1 -0.4169 -4.2130 -4.2289 35 1 1.2574 -3.7927 -4.6876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260709067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = 64.862139 kcal Electronic energy + Delta-G solvation = -16701.131639 eV Core-core repulsion = 14121.064633 eV Total energy + Delta-G solvation = -2580.067006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.41749 -38.34907 -34.15336 -33.45507 -31.21293 -29.81309 -28.64272 -27.34144 -25.23491 -23.39512 -21.60241 -20.71902 -20.07958 -19.39888 -16.84090 -16.51318 -15.63227 -15.40524 -14.72989 -14.69614 -13.91463 -13.32228 -13.27386 -12.98627 -12.35650 -12.25182 -11.77282 -11.32865 -11.19525 -11.11987 -11.05089 -10.99794 -10.82769 -10.68145 -10.63212 -10.45496 -10.17220 -9.84076 -9.69668 -9.22780 -8.59276 -8.08743 -6.21554 -4.27126 2.48287 3.10667 3.20891 3.28435 3.32619 3.43105 4.31528 4.56748 4.60724 4.70157 5.05097 5.14494 5.24489 5.40899 5.43652 5.47803 5.62884 5.64999 5.75293 5.82611 5.89222 5.95172 6.07130 6.07625 6.15641 6.26209 6.29937 6.42303 6.51995 7.02928 7.23854 7.36303 7.49157 7.73397 8.07646 8.76987 9.33156 9.38647 10.87852 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.007485 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.558292 B = 3739.675280 C = 4526.090429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.082 3.918 10 C 0.044 3.956 11 C -0.082 4.082 12 N -0.283 5.283 13 N -0.121 5.121 14 N -0.295 5.295 15 C 0.125 3.875 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.116 4.116 21 H 0.265 0.735 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.179 0.821 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -8.173 -8.518 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.088 4.088 11 C -0.238 4.238 12 N -0.150 5.150 13 N -0.100 5.100 14 N -0.088 5.088 15 C 0.003 3.997 16 C -0.126 4.126 17 C -0.153 4.153 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.154 4.154 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.196 0.804 25 H 0.128 0.872 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.232 -9.225 -8.943 12.851 hybrid contribution -0.314 1.969 0.330 2.021 sum -0.083 -7.256 -8.613 11.263 Atomic orbital electron populations 1.69934 1.06017 1.27235 1.49630 1.24966 0.94882 0.99303 0.94713 0.86501 0.79945 0.82860 0.78267 1.20534 1.20944 1.19676 1.20981 0.93105 0.89543 1.52256 0.92399 1.17946 0.91146 0.87245 0.99337 1.23250 1.01554 0.98246 0.85781 1.23145 1.01710 0.98532 1.00429 1.74868 1.19953 1.18898 1.01261 1.78045 1.12684 1.12155 1.07086 1.47132 1.30053 1.23044 1.08532 1.22175 0.98031 1.02421 0.77071 1.22151 0.96966 0.95345 0.98160 1.22410 1.00498 0.94095 0.98338 1.22496 1.00186 0.97777 0.95752 1.22360 1.01567 0.94654 0.97517 1.22112 1.01900 0.97835 0.93545 0.92547 0.94958 0.93365 0.80362 0.87152 0.88651 0.89935 0.90908 0.91954 0.91682 0.91735 0.91762 0.91644 0.91065 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -13.67 9.09 -34.44 -0.31 -13.98 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.08 1.96 5.13 -29.03 -0.15 1.81 16 10 C 0.04 0.95 6.19 -82.09 -0.51 0.45 16 11 C -0.08 -1.74 11.99 -17.73 -0.21 -1.96 16 12 N -0.28 -6.18 12.41 30.24 0.38 -5.81 16 13 N -0.12 -2.53 13.02 60.35 0.79 -1.74 16 14 N -0.29 -5.80 3.17 -57.05 -0.18 -5.98 16 15 C 0.12 1.97 5.05 -4.05 -0.02 1.95 16 16 C -0.11 -1.47 3.15 -89.50 -0.28 -1.75 16 17 C -0.12 -1.52 6.05 -25.07 -0.15 -1.67 16 18 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 19 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 20 C -0.12 -1.31 6.46 -25.61 -0.17 -1.48 16 21 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 22 H 0.03 0.78 7.59 -51.93 -0.39 0.38 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.18 3.40 8.06 -52.49 -0.42 2.98 16 25 H 0.11 1.83 7.63 -51.93 -0.40 1.43 16 26 H 0.10 1.33 8.00 -51.93 -0.42 0.91 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.07 0.99 7.76 -51.93 -0.40 0.59 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 292.94 15.07 4.41 4.41 Total: -1.00 -28.93 292.94 -6.49 -35.42 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.35 Total: -0.11 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.24 Total: -17.91 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 1.72 Total: -37.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.93 -6.49 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260709067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.282 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds