Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46986 * 269.99975 * 3 2 1 5 5 H 1.48495 * 109.47345 * 29.99962 * 3 2 1 6 6 H 1.48504 * 109.47173 * 150.00366 * 3 2 1 7 7 C 1.37881 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46697 * 180.02562 * 9 7 2 11 11 C 1.35349 * 126.90864 * 85.02604 * 10 9 7 12 12 N 1.33776 * 106.49589 * 179.73311 * 11 10 9 13 13 N 1.28634 * 108.88224 * 0.26432 * 12 11 10 14 14 N 1.28722 * 110.18245 * 359.97438 * 13 12 11 15 15 C 1.46498 * 125.87079 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.47293 * 89.97287 * 15 14 13 17 17 C 1.54272 * 110.03340 * 292.16580 * 16 15 14 18 18 C 1.54886 * 104.19554 * 217.10891 * 17 16 15 19 19 C 1.54886 * 102.75120 * 37.93961 * 18 17 16 20 20 C 1.53874 * 110.03178 * 175.00130 * 16 15 14 21 21 H 0.97000 * 120.00552 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47346 * 60.00288 * 9 7 2 23 23 H 1.09000 * 109.47113 * 299.99632 * 9 7 2 24 24 H 1.08002 * 126.75754 * 0.02562 * 11 10 9 25 25 H 1.09004 * 109.47089 * 209.97499 * 15 14 13 26 26 H 1.09001 * 109.46981 * 329.96731 * 15 14 13 27 27 H 1.08992 * 110.01940 * 53.60846 * 16 15 14 28 28 H 1.09000 * 110.48384 * 335.78303 * 17 16 15 29 29 H 1.08992 * 110.48715 * 98.42497 * 17 16 15 30 30 H 1.09004 * 110.75757 * 279.62906 * 18 17 16 31 31 H 1.08997 * 110.91586 * 156.33010 * 18 17 16 32 32 H 1.09000 * 110.49133 * 203.38062 * 19 18 17 33 33 H 1.09003 * 110.48555 * 80.73726 * 19 18 17 34 34 H 1.09004 * 110.03280 * 238.57049 * 20 16 15 35 35 H 1.09004 * 110.03058 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.8300 -4.2014 1.0776 12 7 3.6095 -5.1844 0.6133 13 7 3.5041 -5.2294 -0.6679 14 7 2.6894 -4.3214 -1.0786 15 6 2.3182 -4.0682 -2.4730 16 6 1.0924 -4.9090 -2.8352 17 6 1.4640 -6.4063 -2.8493 18 6 0.6458 -6.9895 -4.0280 19 6 0.7142 -5.8588 -5.0843 20 6 0.6157 -4.5610 -4.2562 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.7006 -3.9124 2.1102 25 1 2.0844 -3.0112 -2.6006 26 1 3.1492 -4.3377 -3.1248 27 1 0.2915 -4.7292 -2.1181 28 1 2.5320 -6.5326 -3.0270 29 1 1.1736 -6.8803 -1.9118 30 1 -0.3855 -7.1756 -3.7277 31 1 1.1064 -7.9014 -4.4079 32 1 -0.1234 -5.9333 -5.7778 33 1 1.6611 -5.8967 -5.6229 34 1 -0.4169 -4.2130 -4.2289 35 1 1.2574 -3.7927 -4.6876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260709067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = 49.138892 kcal Electronic energy + Delta-G solvation = -16701.813450 eV Core-core repulsion = 14121.064633 eV Total energy + Delta-G solvation = -2580.748817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.07992 -39.39529 -35.85865 -35.16826 -33.08130 -31.05051 -29.59571 -29.22320 -26.52471 -25.32288 -23.24687 -21.82220 -21.34314 -20.65946 -18.66869 -18.19334 -17.12071 -16.67620 -16.45262 -15.89024 -15.34337 -14.82215 -14.55034 -14.29333 -14.25146 -13.65688 -13.41561 -13.07768 -12.73965 -12.54156 -12.33740 -12.15192 -12.00796 -11.95447 -11.89734 -11.71281 -11.66059 -11.56335 -11.35717 -10.78508 -10.63035 -9.84869 -8.25055 -6.37826 0.79970 1.40382 1.43003 1.52732 1.60278 1.70873 2.39789 3.07943 3.50768 3.55720 3.62263 3.75301 3.94764 4.26535 4.28320 4.31939 4.42435 4.51741 4.58211 4.66200 4.72081 4.81339 4.90141 4.98523 5.07686 5.20834 5.23525 5.29614 5.35345 5.38285 5.45531 5.48102 5.66894 5.84162 6.07815 6.70708 7.31670 7.63964 8.84205 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.007485 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.558292 B = 3739.675280 C = 4526.090429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.097 3.903 10 C 0.025 3.975 11 C -0.082 4.082 12 N -0.300 5.300 13 N -0.117 5.117 14 N -0.284 5.284 15 C 0.117 3.883 16 C -0.102 4.102 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.114 4.114 21 H 0.269 0.731 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.196 0.804 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -8.111 -9.914 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.058 3.942 10 C -0.108 4.108 11 C -0.239 4.239 12 N -0.167 5.167 13 N -0.096 5.096 14 N -0.077 5.077 15 C -0.004 4.004 16 C -0.122 4.122 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.152 4.152 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.213 0.787 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.707 -9.175 -10.353 13.852 hybrid contribution -0.470 1.911 0.757 2.109 sum 0.237 -7.264 -9.596 12.038 Atomic orbital electron populations 1.70023 1.07288 1.28240 1.50226 1.25698 0.95620 1.02413 0.94190 0.85539 0.78565 0.78951 0.78595 1.19586 1.20406 1.19687 1.21170 0.92794 0.90811 1.52395 0.93292 1.17617 0.91061 0.87472 0.98034 1.22975 1.02310 0.98678 0.86860 1.23484 1.01062 0.98056 1.01262 1.74861 1.20679 1.19435 1.01682 1.77977 1.12533 1.12120 1.06960 1.47403 1.28920 1.21930 1.09487 1.22539 0.99854 1.02458 0.75510 1.22118 0.95190 0.95614 0.99269 1.22368 1.00726 0.93493 0.98597 1.22486 0.99837 0.98610 0.94769 1.22354 1.02945 0.92897 0.97205 1.22128 1.01938 0.99164 0.91956 0.92241 0.95776 0.95094 0.78732 0.88033 0.86294 0.92376 0.91195 0.94096 0.91570 0.90252 0.90089 0.90507 0.91068 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.77 13.29 21.45 0.28 -50.48 16 2 C 0.02 1.10 5.46 84.66 0.46 1.57 16 3 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.53 -28.17 9.09 25.60 0.23 -27.94 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.10 4.74 5.13 29.10 0.15 4.89 16 10 C 0.02 1.08 6.19 41.36 0.26 1.34 16 11 C -0.08 -3.49 11.99 83.73 1.00 -2.49 16 12 N -0.30 -13.01 12.41 -58.25 -0.72 -13.73 16 13 N -0.12 -4.83 13.02 37.02 0.48 -4.35 16 14 N -0.28 -11.12 3.17 -334.41 -1.06 -12.18 16 15 C 0.12 3.62 5.05 86.38 0.44 4.06 16 16 C -0.10 -2.78 3.15 -10.07 -0.03 -2.81 16 17 C -0.11 -2.90 6.05 31.67 0.19 -2.71 16 18 C -0.12 -2.28 6.91 31.88 0.22 -2.06 16 19 C -0.12 -1.96 6.83 31.67 0.22 -1.75 16 20 C -0.11 -2.39 6.46 31.32 0.20 -2.18 16 21 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 22 H 0.02 1.19 7.59 -2.39 -0.02 1.18 16 23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.20 7.39 8.06 -2.91 -0.02 7.36 16 25 H 0.10 3.36 7.63 -2.38 -0.02 3.34 16 26 H 0.12 3.12 8.00 -2.39 -0.02 3.10 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 1.81 7.76 -2.39 -0.02 1.79 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.08 1.52 7.67 -2.38 -0.02 1.50 16 Total: -1.00 -60.39 292.94 5.40 -54.99 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.06 Total: 12.16 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.34 Total: -30.10 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.02 Total: -80.74 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -60.39 5.40 -54.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260709067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.124 kcal (2) G-P(sol) polarization free energy of solvation -60.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds