Wall clock time and date at job start Mon Mar 30 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48494 * 109.47294 * 240.00200 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47263 * 119.99742 * 3 2 1 7 7 C 1.37881 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00000 * 185.41240 * 7 2 1 9 9 C 1.50699 * 119.99771 * 5.41339 * 7 2 1 10 10 H 1.09007 * 109.47168 * 335.07324 * 9 7 2 11 11 C 1.52995 * 109.47115 * 215.07400 * 9 7 2 12 12 N 1.46901 * 109.47238 * 65.30189 * 11 9 7 13 13 C 1.50700 * 109.47063 * 95.07318 * 9 7 2 14 14 N 1.35199 * 126.19185 * 59.97221 * 13 9 7 15 15 H 0.97000 * 125.99878 * 0.02562 * 14 13 9 16 16 N 1.40315 * 107.99490 * 179.97438 * 14 13 9 17 17 C 1.30126 * 108.11940 * 359.96685 * 16 14 13 18 18 C 1.34573 * 126.19037 * 239.99818 * 13 9 7 19 19 C 1.50886 * 128.32896 * 0.09229 * 18 13 9 20 20 C 1.53387 * 108.19183 * 163.36310 * 19 18 13 21 21 C 1.53055 * 109.71520 * 50.55907 * 20 19 18 22 22 C 1.50949 * 128.28405 * 180.18364 * 17 16 14 23 23 H 0.97004 * 119.99715 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47107 * 185.30017 * 11 9 7 25 25 H 1.08996 * 109.47275 * 305.30233 * 11 9 7 26 26 H 1.00900 * 110.99816 * 56.04551 * 12 11 9 27 27 H 1.00900 * 111.00215 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.71962 * 283.03661 * 19 18 13 29 29 H 1.09003 * 109.71268 * 43.69409 * 19 18 13 30 30 H 1.09003 * 109.42436 * 170.62009 * 20 19 18 31 31 H 1.08997 * 109.43202 * 290.46079 * 20 19 18 32 32 H 1.09001 * 109.42127 * 168.19453 * 21 20 19 33 33 H 1.09005 * 109.39930 * 48.32136 * 21 20 19 34 34 H 1.09002 * 109.72197 * 282.86329 * 22 17 16 35 35 H 1.09006 * 109.71546 * 43.46491 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0877 9 6 1.2562 -2.4962 -0.1242 10 1 0.2350 -2.3637 0.2334 11 6 1.9552 -3.5679 0.7145 12 7 1.8684 -3.2106 2.1367 13 6 1.2309 -2.9258 -1.5685 14 7 2.3081 -3.1835 -2.3437 15 1 3.2362 -3.1248 -2.0679 16 7 1.8477 -3.5520 -3.6169 17 6 0.5470 -3.5165 -3.6029 18 6 0.1319 -3.1218 -2.3201 19 6 -1.3148 -2.9644 -1.9213 20 6 -2.1585 -2.8893 -3.2001 21 6 -1.8012 -4.0563 -4.1237 22 6 -0.4094 -3.8326 -4.7271 23 1 -0.4850 0.8401 -0.0004 24 1 1.4703 -4.5305 0.5514 25 1 3.0025 -3.6341 0.4198 26 1 0.9085 -3.0800 2.4187 27 1 2.3229 -3.9037 2.7121 28 1 -1.6271 -3.8212 -1.3245 29 1 -1.4394 -2.0481 -1.3442 30 1 -3.2158 -2.9430 -2.9405 31 1 -1.9590 -1.9476 -3.7114 32 1 -2.5374 -4.1230 -4.9248 33 1 -1.8027 -4.9842 -3.5517 34 1 -0.4428 -2.9978 -5.4273 35 1 -0.0826 -4.7342 -5.2453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260780751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:25 Heat of formation + Delta-G solvation = 44.907307 kcal Electronic energy + Delta-G solvation = -17097.722448 eV Core-core repulsion = 14516.790136 eV Total energy + Delta-G solvation = -2580.932312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54677 -36.02256 -35.12862 -32.37167 -31.40841 -29.60579 -28.99281 -26.63524 -24.26843 -23.58849 -21.19845 -21.03317 -18.88251 -17.93102 -16.74732 -15.95202 -14.80692 -14.69767 -14.49084 -13.88493 -13.54466 -13.40271 -13.24234 -12.85473 -12.28848 -12.09680 -11.87427 -11.41867 -11.28832 -10.91194 -10.79928 -10.66358 -10.46754 -10.33430 -10.08619 -9.62433 -9.47958 -9.15835 -8.50750 -8.29813 -7.78322 -7.20947 -6.07516 -4.08141 2.96102 3.32336 3.36063 3.39412 3.72288 3.84408 4.42294 5.16426 5.18050 5.33126 5.37744 5.48118 5.74845 5.99956 6.03814 6.06001 6.12708 6.16063 6.20097 6.28600 6.48185 6.50990 6.62542 6.70935 6.82944 6.94979 7.07046 7.25262 7.59968 7.68583 7.85059 7.92900 8.21533 8.25880 8.37983 8.71540 8.94906 9.54283 11.01419 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.009374 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.126970 B = 2986.220225 C = 3305.629010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.493 4.493 8 H 0.054 0.946 9 C 0.085 3.915 10 H 0.087 0.913 11 C 0.079 3.921 12 N -0.829 5.829 13 C 0.160 3.840 14 N -0.482 5.482 15 H 0.430 0.570 16 N -0.327 5.327 17 C 0.070 3.930 18 C -0.262 4.262 19 C -0.034 4.034 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.032 4.032 23 H 0.262 0.738 24 H -0.002 1.002 25 H 0.050 0.950 26 H 0.338 0.662 27 H 0.321 0.679 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -7.033 -3.155 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.064 3.936 10 H 0.104 0.896 11 C -0.053 4.053 12 N -0.357 5.357 13 C 0.031 3.969 14 N -0.189 5.189 15 H 0.272 0.728 16 N -0.150 5.150 17 C -0.097 4.097 18 C -0.273 4.273 19 C -0.072 4.072 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.071 4.071 23 H 0.072 0.928 24 H 0.016 0.984 25 H 0.068 0.932 26 H 0.150 0.850 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.763 -6.488 -4.078 7.863 hybrid contribution -0.099 0.392 0.633 0.751 sum -1.862 -6.096 -3.445 7.245 Atomic orbital electron populations 1.69850 1.05813 1.26873 1.49379 1.24904 0.94857 0.99136 0.94183 0.86665 0.79696 0.83152 0.78519 1.20542 1.21337 1.20127 1.20658 0.92941 0.89228 1.50307 0.92770 1.17832 1.00431 0.92795 0.82517 0.89551 1.21813 0.99287 0.95068 0.89105 1.58454 1.22046 1.51820 1.03362 1.21787 0.85947 0.92097 0.97092 1.46084 1.08307 1.56641 1.07886 0.72754 1.76721 1.11697 1.25825 1.00729 1.22060 0.91643 1.00026 0.96007 1.19546 0.95784 1.18016 0.93964 1.19879 0.89504 1.01907 0.95958 1.21533 0.98725 0.98116 0.96772 1.21526 0.95331 0.99339 0.98771 1.19969 0.92129 1.01217 0.93819 0.92783 0.98430 0.93168 0.84976 0.86894 0.93333 0.89441 0.92540 0.92182 0.92137 0.92004 0.90838 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.06 12.77 55.43 0.71 -23.35 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.49 -12.78 8.03 -34.44 -0.28 -13.06 16 8 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 9 C 0.08 1.97 2.47 -92.93 -0.23 1.74 16 10 H 0.09 2.19 6.51 -51.93 -0.34 1.85 16 11 C 0.08 1.57 6.14 -3.83 -0.02 1.54 16 12 N -0.83 -15.38 9.35 -10.37 -0.10 -15.48 16 13 C 0.16 3.62 5.69 -82.41 -0.47 3.15 16 14 N -0.48 -10.35 7.37 33.39 0.25 -10.10 16 15 H 0.43 8.30 8.96 -182.43 -1.64 6.67 16 16 N -0.33 -7.07 12.68 33.75 0.43 -6.64 16 17 C 0.07 1.44 7.10 -82.35 -0.58 0.85 16 18 C -0.26 -5.69 5.88 -104.98 -0.62 -6.30 16 19 C -0.03 -0.66 5.72 -27.59 -0.16 -0.82 16 20 C -0.11 -1.82 5.87 -26.50 -0.16 -1.97 16 21 C -0.11 -1.57 5.86 -26.52 -0.16 -1.72 16 22 C -0.03 -0.51 6.31 -27.58 -0.17 -0.68 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.34 6.13 8.99 -39.29 -0.35 5.78 16 27 H 0.32 4.88 9.08 -39.29 -0.36 4.53 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.94 7.95 -51.93 -0.41 1.52 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 288.36 15.07 4.35 4.35 Total: -1.00 -29.10 288.36 -8.77 -37.87 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.44 Total: 12.50 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.94 Total: -15.43 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 1.28 Total: -55.57 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.10 -8.77 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.779 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds