Wall clock time and date at job start Mon Mar 30 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48494 * 109.47294 * 240.00200 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47263 * 119.99742 * 3 2 1 7 7 C 1.37881 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00000 * 185.41240 * 7 2 1 9 9 C 1.50699 * 119.99771 * 5.41339 * 7 2 1 10 10 H 1.09007 * 109.47168 * 335.07324 * 9 7 2 11 11 C 1.52995 * 109.47115 * 215.07400 * 9 7 2 12 12 N 1.46901 * 109.47238 * 65.30189 * 11 9 7 13 13 C 1.50700 * 109.47063 * 95.07318 * 9 7 2 14 14 N 1.35199 * 126.19185 * 59.97221 * 13 9 7 15 15 H 0.97000 * 125.99878 * 0.02562 * 14 13 9 16 16 N 1.40315 * 107.99490 * 179.97438 * 14 13 9 17 17 C 1.30126 * 108.11940 * 359.96685 * 16 14 13 18 18 C 1.34573 * 126.19037 * 239.99818 * 13 9 7 19 19 C 1.50886 * 128.32896 * 0.09229 * 18 13 9 20 20 C 1.53387 * 108.19183 * 163.36310 * 19 18 13 21 21 C 1.53055 * 109.71520 * 50.55907 * 20 19 18 22 22 C 1.50949 * 128.28405 * 180.18364 * 17 16 14 23 23 H 0.97004 * 119.99715 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47107 * 185.30017 * 11 9 7 25 25 H 1.08996 * 109.47275 * 305.30233 * 11 9 7 26 26 H 1.00900 * 110.99816 * 56.04551 * 12 11 9 27 27 H 1.00900 * 111.00215 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.71962 * 283.03661 * 19 18 13 29 29 H 1.09003 * 109.71268 * 43.69409 * 19 18 13 30 30 H 1.09003 * 109.42436 * 170.62009 * 20 19 18 31 31 H 1.08997 * 109.43202 * 290.46079 * 20 19 18 32 32 H 1.09001 * 109.42127 * 168.19453 * 21 20 19 33 33 H 1.09005 * 109.39930 * 48.32136 * 21 20 19 34 34 H 1.09002 * 109.72197 * 282.86329 * 22 17 16 35 35 H 1.09006 * 109.71546 * 43.46491 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0877 9 6 1.2562 -2.4962 -0.1242 10 1 0.2350 -2.3637 0.2334 11 6 1.9552 -3.5679 0.7145 12 7 1.8684 -3.2106 2.1367 13 6 1.2309 -2.9258 -1.5685 14 7 2.3081 -3.1835 -2.3437 15 1 3.2362 -3.1248 -2.0679 16 7 1.8477 -3.5520 -3.6169 17 6 0.5470 -3.5165 -3.6029 18 6 0.1319 -3.1218 -2.3201 19 6 -1.3148 -2.9644 -1.9213 20 6 -2.1585 -2.8893 -3.2001 21 6 -1.8012 -4.0563 -4.1237 22 6 -0.4094 -3.8326 -4.7271 23 1 -0.4850 0.8401 -0.0004 24 1 1.4703 -4.5305 0.5514 25 1 3.0025 -3.6341 0.4198 26 1 0.9085 -3.0800 2.4187 27 1 2.3229 -3.9037 2.7121 28 1 -1.6271 -3.8212 -1.3245 29 1 -1.4394 -2.0481 -1.3442 30 1 -3.2158 -2.9430 -2.9405 31 1 -1.9590 -1.9476 -3.7114 32 1 -2.5374 -4.1230 -4.9248 33 1 -1.8027 -4.9842 -3.5517 34 1 -0.4428 -2.9978 -5.4273 35 1 -0.0826 -4.7342 -5.2453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260780751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:25 Heat of formation + Delta-G solvation = 25.114731 kcal Electronic energy + Delta-G solvation = -17098.580718 eV Core-core repulsion = 14516.790136 eV Total energy + Delta-G solvation = -2581.790583 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17145 -37.45073 -36.77683 -34.23803 -33.01815 -31.11056 -30.60248 -28.30715 -26.14445 -25.01190 -22.87977 -22.40488 -20.52926 -19.44028 -18.65854 -17.63044 -16.64490 -16.28016 -15.98830 -15.48723 -15.02841 -14.93578 -14.59299 -14.47753 -14.05824 -13.70154 -13.30296 -13.06983 -12.76589 -12.67274 -12.61618 -12.49677 -12.00317 -11.65676 -11.48830 -11.36754 -11.17939 -10.87757 -10.54477 -9.92774 -9.30409 -8.89828 -8.09740 -6.14485 1.27354 1.41133 1.41772 1.47386 2.07585 2.24055 2.44829 3.21952 3.80200 3.89387 4.09904 4.17974 4.35036 4.41866 4.56208 4.70241 4.76865 4.80391 4.82611 4.94821 5.02671 5.12846 5.16392 5.19983 5.39501 5.47884 5.59798 5.63598 5.70153 5.86633 6.11074 6.23391 6.48256 6.70656 6.85568 6.94904 7.06093 7.48935 8.97459 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.009374 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.126970 B = 2986.220225 C = 3305.629010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.941 3.059 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.497 4.497 8 H 0.046 0.954 9 C 0.091 3.909 10 H 0.061 0.939 11 C 0.087 3.913 12 N -0.838 5.838 13 C 0.137 3.863 14 N -0.485 5.485 15 H 0.435 0.565 16 N -0.341 5.341 17 C 0.067 3.933 18 C -0.278 4.278 19 C -0.033 4.033 20 C -0.110 4.110 21 C -0.103 4.103 22 C -0.034 4.034 23 H 0.260 0.740 24 H 0.008 0.992 25 H 0.052 0.948 26 H 0.340 0.660 27 H 0.341 0.659 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 -7.912 -4.125 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.071 3.929 10 H 0.079 0.921 11 C -0.044 4.044 12 N -0.368 5.368 13 C 0.008 3.992 14 N -0.193 5.193 15 H 0.278 0.722 16 N -0.163 5.163 17 C -0.101 4.101 18 C -0.289 4.289 19 C -0.071 4.071 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.154 0.846 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.226 -7.378 -5.030 9.203 hybrid contribution 0.070 0.623 0.949 1.137 sum -2.156 -6.755 -4.082 8.182 Atomic orbital electron populations 1.69962 1.06585 1.27038 1.50583 1.25505 0.95567 1.01603 0.94623 0.85892 0.78625 0.80479 0.78216 1.20973 1.21145 1.19720 1.20867 0.92644 0.90552 1.49483 0.93582 1.17644 0.98864 0.92856 0.83574 0.92126 1.21628 0.98974 0.94387 0.89414 1.58387 1.22481 1.52924 1.03012 1.21763 0.86952 0.93451 0.97011 1.46108 1.08428 1.56830 1.07898 0.72164 1.76693 1.12566 1.26421 1.00659 1.22825 0.91741 0.98686 0.96852 1.20000 0.96627 1.17643 0.94630 1.19865 0.89222 1.00428 0.97609 1.21519 0.99420 0.98580 0.95260 1.21514 0.95040 0.98216 0.99345 1.20219 0.91959 1.02483 0.92621 0.93100 0.97369 0.92962 0.84794 0.84601 0.92446 0.92977 0.90104 0.93459 0.88387 0.91681 0.89882 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.28 12.77 21.45 0.27 -50.01 16 2 C 0.03 1.49 5.45 84.66 0.46 1.95 16 3 Si 0.94 44.05 29.54 68.60 2.03 46.07 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.50 -26.04 8.03 25.60 0.21 -25.83 16 8 H 0.05 2.44 7.82 -2.91 -0.02 2.41 16 9 C 0.09 4.30 2.47 -12.29 -0.03 4.27 16 10 H 0.06 3.16 6.51 -2.38 -0.02 3.15 16 11 C 0.09 3.46 6.14 86.30 0.53 3.99 16 12 N -0.84 -30.55 9.35 -186.72 -1.75 -32.30 16 13 C 0.14 6.26 5.69 41.20 0.23 6.49 16 14 N -0.49 -20.78 7.37 -48.28 -0.36 -21.13 16 15 H 0.43 16.86 8.96 -213.18 -1.91 14.95 16 16 N -0.34 -14.44 12.68 -47.14 -0.60 -15.04 16 17 C 0.07 2.64 7.10 43.44 0.31 2.95 16 18 C -0.28 -12.00 5.88 -20.10 -0.12 -12.12 16 19 C -0.03 -1.27 5.72 30.04 0.17 -1.10 16 20 C -0.11 -3.29 5.87 30.74 0.18 -3.11 16 21 C -0.10 -2.53 5.86 30.73 0.18 -2.35 16 22 C -0.03 -0.97 6.31 30.04 0.19 -0.78 16 23 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 24 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.34 12.25 8.99 -89.69 -0.81 11.44 16 27 H 0.34 9.94 9.08 -89.69 -0.81 9.12 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.37 7.95 -2.39 -0.02 2.35 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.58 8.10 -2.38 -0.02 1.56 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -62.15 288.36 -0.50 -62.65 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -2.41 Total: 35.39 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 2.31 Total: -25.64 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -2.43 Total: -118.47 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -62.15 -0.50 -62.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.762 kcal (2) G-P(sol) polarization free energy of solvation -62.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds