Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35969 * 126.22560 * 2 1 4 4 H 0.97003 * 126.06737 * 0.02562 * 3 2 1 5 5 N 1.40077 * 107.85943 * 179.84737 * 3 2 1 6 6 C 1.30865 * 108.35713 * 0.42602 * 5 3 2 7 7 C 1.35700 * 126.22342 * 180.31384 * 2 1 3 8 8 N 1.40798 * 126.06962 * 359.97438 * 7 2 1 9 9 C 1.46847 * 111.00572 * 244.21032 * 8 7 2 10 10 C 1.53036 * 109.52706 * 174.15602 * 9 8 7 11 11 C 1.53120 * 109.27485 * 59.18520 * 10 9 8 12 12 C 1.50700 * 109.52095 * 182.43840 * 11 10 9 13 13 H 1.08009 * 119.99458 * 119.68169 * 12 11 10 14 14 C 1.37867 * 120.00057 * 299.68312 * 12 11 10 15 15 N 1.31517 * 120.00334 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00102 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46855 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47188 * 119.99447 * 16 14 12 19 19 H 1.48490 * 109.47387 * 239.99750 * 16 14 12 20 20 C 1.53124 * 109.15836 * 302.34224 * 11 10 9 21 21 C 1.46848 * 111.00031 * 120.00005 * 8 7 2 22 22 H 1.09002 * 109.47152 * 269.68713 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68814 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68795 * 1 2 3 25 25 H 1.08001 * 125.81617 * 179.78249 * 6 5 3 26 26 H 1.08992 * 109.46208 * 294.17999 * 9 8 7 27 27 H 1.09003 * 109.45635 * 54.14423 * 9 8 7 28 28 H 1.08994 * 109.50476 * 299.24458 * 10 9 8 29 29 H 1.08999 * 109.50293 * 179.12280 * 10 9 8 30 30 H 1.09001 * 109.52554 * 62.24558 * 11 10 9 31 31 H 0.96994 * 120.00326 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.50386 * 297.71716 * 20 11 10 33 33 H 1.09004 * 109.50064 * 177.59852 * 20 11 10 34 34 H 1.08997 * 109.46459 * 305.85566 * 21 8 7 35 35 H 1.08997 * 109.46396 * 65.82579 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3106 1.0969 0.0000 4 1 2.0155 2.0209 0.0004 5 7 3.6400 0.6555 0.0036 6 6 3.6398 -0.6531 -0.0036 7 6 2.3089 -1.0947 -0.0060 8 7 1.8807 -2.4360 -0.0128 9 6 2.2892 -3.1252 1.2178 10 6 1.6848 -4.5310 1.2414 11 6 2.1673 -5.3093 0.0142 12 6 1.5282 -6.6740 0.0002 13 1 0.9020 -6.9685 -0.8291 14 6 1.7429 -7.5465 1.0459 15 7 2.5059 -7.1881 2.0554 16 14 0.9514 -9.2385 1.0282 17 1 0.1468 -9.3956 -0.2101 18 1 2.0089 -10.2802 1.0673 19 1 0.0687 -9.3845 2.2133 20 6 1.7714 -4.5458 -1.2527 21 6 2.3732 -3.1396 -1.2040 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 4.5155 -1.2853 -0.0065 26 1 3.3763 -3.1966 1.2502 27 1 1.9363 -2.5636 2.0828 28 1 0.5974 -4.4599 1.2229 29 1 2.0010 -5.0478 2.1475 30 1 3.2516 -5.4141 0.0524 31 1 2.6572 -7.8020 2.7909 32 1 0.6852 -4.4750 -1.3104 33 1 2.1493 -5.0733 -2.1285 34 1 2.0813 -2.5885 -2.0979 35 1 3.4599 -3.2110 -1.1602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260833689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = 64.496137 kcal Electronic energy + Delta-G solvation = -16790.765584 eV Core-core repulsion = 14210.682708 eV Total energy + Delta-G solvation = -2580.082877 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07731 -37.82664 -33.84142 -32.36976 -31.48480 -29.77848 -29.26998 -26.69339 -25.03468 -22.18591 -21.91364 -21.55070 -19.42161 -18.48329 -17.14433 -16.28902 -15.02620 -14.90217 -14.45493 -14.15662 -13.78746 -13.49781 -12.93239 -12.69696 -12.48040 -12.43366 -12.25232 -11.96551 -11.37192 -10.97478 -10.77932 -10.77074 -10.42385 -10.17707 -10.02079 -9.43227 -9.33859 -8.93710 -8.66711 -8.27571 -8.09993 -7.77667 -5.93662 -3.98724 1.95794 2.89564 2.93439 3.32891 3.41118 3.45068 4.43298 4.48784 4.87983 5.15798 5.30709 5.36876 5.61483 5.71734 5.82675 5.92782 6.00695 6.14123 6.20528 6.34887 6.36658 6.57581 6.65497 6.69052 6.91289 7.13750 7.21932 7.36539 7.52677 7.65436 7.77205 7.84059 7.99495 8.11827 8.20540 8.52599 9.05390 9.65694 11.12595 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.051001 B = 0.005738 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.877274 B = 4878.482652 C = 4951.174799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.095 3.905 3 N -0.486 5.486 4 H 0.436 0.564 5 N -0.296 5.296 6 C 0.029 3.971 7 C -0.049 4.049 8 N -0.467 5.467 9 C 0.066 3.934 10 C -0.104 4.104 11 C 0.047 3.953 12 C -0.508 4.508 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.106 4.106 21 C 0.068 3.932 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.177 0.823 26 H 0.024 0.976 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.021 0.979 31 H 0.258 0.742 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 13.390 -3.207 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 N -0.197 5.197 4 H 0.280 0.720 5 N -0.118 5.118 6 C -0.160 4.160 7 C -0.154 4.154 8 N -0.190 5.190 9 C -0.061 4.061 10 C -0.142 4.142 11 C 0.028 3.972 12 C -0.546 4.546 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.144 4.144 21 C -0.059 4.059 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.080 0.920 25 H 0.194 0.806 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.167 14.305 -3.053 14.787 hybrid contribution -0.009 -1.181 0.156 1.191 sum -2.176 13.124 -2.897 13.615 Atomic orbital electron populations 1.20345 0.86810 1.03580 1.03247 1.20933 0.94322 0.86934 1.01088 1.46286 1.04129 1.07809 1.61484 0.72035 1.77218 0.96857 1.12881 1.24850 1.24383 0.99245 0.92435 0.99954 1.18773 0.89939 0.91741 1.14975 1.59542 1.58756 0.97128 1.03532 1.22287 0.97418 0.96866 0.89509 1.21680 0.98796 0.90366 1.03366 1.18699 0.96168 0.92928 0.89376 1.21250 1.29570 0.98709 1.05116 0.92708 1.24964 0.95209 0.98203 0.95651 1.69884 1.38279 1.35713 1.09299 0.86596 0.79186 0.84654 0.77904 1.19845 1.21188 1.21128 1.21697 1.00174 0.92327 1.00217 1.22128 0.96814 0.95853 0.91140 0.90450 0.88664 0.92003 0.80598 0.95725 0.92816 0.93785 0.88896 0.96077 0.93187 0.92460 0.93109 0.92571 0.95587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.38 36.01 0.37 -0.48 16 2 C 0.10 1.30 7.26 -81.67 -0.59 0.70 16 3 N -0.49 -6.08 7.41 33.72 0.25 -5.83 16 4 H 0.44 3.81 8.96 -182.61 -1.64 2.18 16 5 N -0.30 -4.52 12.69 30.70 0.39 -4.13 16 6 C 0.03 0.46 11.41 -17.22 -0.20 0.26 16 7 C -0.05 -0.80 4.81 -83.90 -0.40 -1.20 16 8 N -0.47 -8.41 4.70 -171.34 -0.81 -9.22 16 9 C 0.07 1.30 5.29 -3.83 -0.02 1.28 16 10 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 11 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 12 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 13 H 0.05 1.48 7.75 -52.48 -0.41 1.08 16 14 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 15 N -0.89 -25.33 11.37 55.43 0.63 -24.70 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.11 -2.20 5.32 -26.65 -0.14 -2.35 16 21 C 0.07 1.23 5.24 -3.83 -0.02 1.21 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.18 2.59 8.06 -52.49 -0.42 2.16 16 26 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.03 0.48 8.02 -51.93 -0.42 0.06 16 LS Contribution 286.44 15.07 4.32 4.32 Total: -1.00 -29.74 286.44 -8.52 -38.27 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.56 Total: -0.14 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.73 Total: -14.74 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.46 Total: -43.89 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.74 -8.52 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260833689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.763 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds