Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35969 * 126.22560 * 2 1 4 4 H 0.97003 * 126.06737 * 0.02562 * 3 2 1 5 5 N 1.40077 * 107.85943 * 179.84737 * 3 2 1 6 6 C 1.30865 * 108.35713 * 0.42602 * 5 3 2 7 7 C 1.35700 * 126.22342 * 180.31384 * 2 1 3 8 8 N 1.40798 * 126.06962 * 359.97438 * 7 2 1 9 9 C 1.46847 * 111.00572 * 244.21032 * 8 7 2 10 10 C 1.53036 * 109.52706 * 174.15602 * 9 8 7 11 11 C 1.53120 * 109.27485 * 59.18520 * 10 9 8 12 12 C 1.50700 * 109.52095 * 182.43840 * 11 10 9 13 13 H 1.08009 * 119.99458 * 119.68169 * 12 11 10 14 14 C 1.37867 * 120.00057 * 299.68312 * 12 11 10 15 15 N 1.31517 * 120.00334 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00102 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46855 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47188 * 119.99447 * 16 14 12 19 19 H 1.48490 * 109.47387 * 239.99750 * 16 14 12 20 20 C 1.53124 * 109.15836 * 302.34224 * 11 10 9 21 21 C 1.46848 * 111.00031 * 120.00005 * 8 7 2 22 22 H 1.09002 * 109.47152 * 269.68713 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68814 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68795 * 1 2 3 25 25 H 1.08001 * 125.81617 * 179.78249 * 6 5 3 26 26 H 1.08992 * 109.46208 * 294.17999 * 9 8 7 27 27 H 1.09003 * 109.45635 * 54.14423 * 9 8 7 28 28 H 1.08994 * 109.50476 * 299.24458 * 10 9 8 29 29 H 1.08999 * 109.50293 * 179.12280 * 10 9 8 30 30 H 1.09001 * 109.52554 * 62.24558 * 11 10 9 31 31 H 0.96994 * 120.00326 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.50386 * 297.71716 * 20 11 10 33 33 H 1.09004 * 109.50064 * 177.59852 * 20 11 10 34 34 H 1.08997 * 109.46459 * 305.85566 * 21 8 7 35 35 H 1.08997 * 109.46396 * 65.82579 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3106 1.0969 0.0000 4 1 2.0155 2.0209 0.0004 5 7 3.6400 0.6555 0.0036 6 6 3.6398 -0.6531 -0.0036 7 6 2.3089 -1.0947 -0.0060 8 7 1.8807 -2.4360 -0.0128 9 6 2.2892 -3.1252 1.2178 10 6 1.6848 -4.5310 1.2414 11 6 2.1673 -5.3093 0.0142 12 6 1.5282 -6.6740 0.0002 13 1 0.9020 -6.9685 -0.8291 14 6 1.7429 -7.5465 1.0459 15 7 2.5059 -7.1881 2.0554 16 14 0.9514 -9.2385 1.0282 17 1 0.1468 -9.3956 -0.2101 18 1 2.0089 -10.2802 1.0673 19 1 0.0687 -9.3845 2.2133 20 6 1.7714 -4.5458 -1.2527 21 6 2.3732 -3.1396 -1.2040 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 4.5155 -1.2853 -0.0065 26 1 3.3763 -3.1966 1.2502 27 1 1.9363 -2.5636 2.0828 28 1 0.5974 -4.4599 1.2229 29 1 2.0010 -5.0478 2.1475 30 1 3.2516 -5.4141 0.0524 31 1 2.6572 -7.8020 2.7909 32 1 0.6852 -4.4750 -1.3104 33 1 2.1493 -5.0733 -2.1285 34 1 2.0813 -2.5885 -2.0979 35 1 3.4599 -3.2110 -1.1602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260833689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = 45.348351 kcal Electronic energy + Delta-G solvation = -16791.595895 eV Core-core repulsion = 14210.682708 eV Total energy + Delta-G solvation = -2580.913187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.23227 -39.40952 -35.65005 -33.43207 -33.26204 -31.43391 -30.58594 -28.06678 -26.67658 -23.81189 -23.60168 -22.79867 -20.74008 -20.12376 -18.44848 -18.22924 -16.64692 -16.20260 -16.09197 -15.31875 -15.22619 -14.94885 -14.61218 -14.26755 -13.98876 -13.76424 -13.51981 -13.10425 -12.97245 -12.81784 -12.60046 -12.26284 -12.08658 -11.91574 -11.83894 -11.32304 -10.78143 -10.62763 -10.44059 -10.33949 -9.31516 -9.21949 -8.03533 -6.16416 0.86088 1.43210 1.45448 1.56509 1.68029 1.95038 2.47776 3.05507 3.23827 3.86341 4.08672 4.29221 4.34309 4.35534 4.43022 4.61313 4.75495 4.78584 4.84173 4.91831 5.01766 5.07898 5.16205 5.28026 5.30284 5.38421 5.41347 5.63938 5.71022 6.04562 6.07638 6.32996 6.40644 6.45699 6.65320 6.68812 6.95923 7.51445 9.01338 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.051001 B = 0.005738 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.877274 B = 4878.482652 C = 4951.174799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.115 3.885 3 N -0.468 5.468 4 H 0.454 0.546 5 N -0.313 5.313 6 C 0.020 3.980 7 C -0.087 4.087 8 N -0.461 5.461 9 C 0.079 3.921 10 C -0.092 4.092 11 C 0.043 3.957 12 C -0.528 4.528 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.281 1.281 20 C -0.097 4.097 21 C 0.075 3.925 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.177 0.823 26 H 0.014 0.986 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.061 0.939 30 H -0.012 1.012 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 14.797 -3.866 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.015 4.015 3 N -0.181 5.181 4 H 0.302 0.698 5 N -0.135 5.135 6 C -0.168 4.168 7 C -0.192 4.192 8 N -0.183 5.183 9 C -0.048 4.048 10 C -0.131 4.131 11 C 0.025 3.975 12 C -0.567 4.567 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.207 1.207 20 C -0.135 4.135 21 C -0.052 4.052 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.194 0.806 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.006 0.994 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.431 15.751 -3.724 16.545 hybrid contribution 0.373 -1.548 0.357 1.631 sum -3.058 14.204 -3.367 14.914 Atomic orbital electron populations 1.20467 0.84371 1.04790 1.04245 1.21333 0.95629 0.86247 0.98245 1.46315 1.03158 1.08685 1.59927 0.69846 1.77180 0.98319 1.12533 1.25475 1.24431 0.99344 0.92786 1.00259 1.18846 0.90739 0.91178 1.18407 1.59414 1.58581 0.98014 1.02261 1.22018 0.96436 0.95120 0.91232 1.21419 0.98146 0.92208 1.01313 1.18674 0.93896 0.93007 0.91951 1.21614 1.29724 1.00207 1.05110 0.92959 1.25723 0.95742 1.01808 0.95342 1.70025 1.39261 1.36859 1.09780 0.85601 0.78315 0.80208 0.78088 1.19123 1.20913 1.20693 1.21548 1.00156 0.93587 0.98230 1.22034 0.96348 0.94550 0.92290 0.89390 0.89716 0.88580 0.80580 0.96722 0.91849 0.94587 0.92075 0.99383 0.93181 0.92537 0.92750 0.90346 0.96027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.38 71.24 0.74 -0.66 16 2 C 0.12 2.80 7.26 41.33 0.30 3.10 16 3 N -0.47 -10.30 7.41 -47.24 -0.35 -10.65 16 4 H 0.45 6.31 8.96 -213.33 -1.91 4.39 16 5 N -0.31 -8.97 12.69 -56.77 -0.72 -9.69 16 6 C 0.02 0.62 11.41 85.32 0.97 1.59 16 7 C -0.09 -2.67 4.81 37.59 0.18 -2.49 16 8 N -0.46 -16.14 4.70 -696.01 -3.27 -19.41 16 9 C 0.08 3.15 5.29 86.33 0.46 3.61 16 10 C -0.09 -4.42 5.12 30.65 0.16 -4.26 16 11 C 0.04 2.18 2.16 -11.46 -0.02 2.16 16 12 C -0.53 -29.26 8.56 25.60 0.22 -29.04 16 13 H 0.05 2.85 7.75 -2.91 -0.02 2.83 16 14 C 0.01 0.67 5.31 84.65 0.45 1.11 16 15 N -0.92 -53.47 11.37 21.44 0.24 -53.22 16 16 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 C -0.10 -4.03 5.32 30.65 0.16 -3.86 16 21 C 0.07 2.66 5.24 86.33 0.45 3.11 16 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.18 5.17 8.06 -2.91 -0.02 5.15 16 26 H 0.01 0.60 8.08 -2.39 -0.02 0.59 16 27 H 0.06 2.39 8.11 -2.39 -0.02 2.37 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 3.31 6.17 -2.39 -0.01 3.29 16 30 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 35 H 0.02 0.79 8.02 -2.39 -0.02 0.77 16 Total: -1.00 -64.21 286.44 1.16 -63.05 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -0.84 Total: 9.72 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.07 Total: -25.64 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -4.10 Total: -92.97 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.21 1.16 -63.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260833689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.398 kcal (2) G-P(sol) polarization free energy of solvation -64.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds