Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34003 * 125.99043 * 2 1 4 4 C 1.30899 * 109.30405 * 180.17904 * 3 2 1 5 5 N 1.34817 * 108.61019 * 359.89174 * 4 3 2 6 6 C 1.34560 * 125.98072 * 179.83034 * 2 1 3 7 7 C 1.50708 * 126.58316 * 0.02562 * 6 2 1 8 8 H 1.08999 * 109.47166 * 179.68132 * 7 6 2 9 9 C 1.50700 * 109.47347 * 59.67887 * 7 6 2 10 10 H 1.07997 * 120.00258 * 269.00341 * 9 7 6 11 11 C 1.37873 * 119.99733 * 89.00175 * 9 7 6 12 12 N 1.31517 * 120.00251 * 187.71590 * 11 9 7 13 13 Si 1.86799 * 120.00260 * 7.72168 * 11 9 7 14 14 H 1.48501 * 109.47140 * 275.18759 * 13 11 9 15 15 H 1.48502 * 109.47637 * 155.18658 * 13 11 9 16 16 H 1.48503 * 109.47338 * 35.18252 * 13 11 9 17 17 C 1.53007 * 109.46810 * 299.68310 * 7 6 2 18 18 N 1.46895 * 109.46967 * 185.14101 * 17 7 6 19 19 C 1.47016 * 111.17851 * 179.78794 * 5 4 3 20 20 C 1.54381 * 105.53128 * 17.11094 * 19 5 4 21 21 C 1.51567 * 141.44602 * 179.97438 * 4 3 2 22 22 H 1.09004 * 109.47311 * 270.17050 * 1 2 3 23 23 H 1.09007 * 109.46669 * 30.16424 * 1 2 3 24 24 H 1.08995 * 109.47509 * 150.16189 * 1 2 3 25 25 H 0.96992 * 120.00553 * 179.97438 * 12 11 9 26 26 H 1.09003 * 109.47042 * 305.13702 * 17 7 6 27 27 H 1.08992 * 109.47208 * 65.13814 * 17 7 6 28 28 H 1.00901 * 111.00200 * 62.08072 * 18 17 7 29 29 H 1.00897 * 110.99721 * 186.03715 * 18 17 7 30 30 H 1.08999 * 110.22812 * 136.12335 * 19 5 4 31 31 H 1.09001 * 110.23553 * 258.00649 * 19 5 4 32 32 H 1.08997 * 110.97077 * 92.40190 * 20 19 5 33 33 H 1.08997 * 110.96774 * 216.16151 * 20 19 5 34 34 H 1.09000 * 110.47964 * 44.66230 * 21 4 3 35 35 H 1.09005 * 110.58627 * 282.09452 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2945 1.0842 0.0000 4 6 3.5483 0.7084 -0.0039 5 7 3.5936 -0.6390 -0.0040 6 6 2.2975 -1.0889 0.0032 7 6 1.8460 -2.5267 0.0069 8 1 2.7175 -3.1813 0.0033 9 6 1.0116 -2.7944 -1.2191 10 1 -0.0597 -2.6626 -1.1825 11 6 1.6158 -3.2075 -2.3874 12 7 0.9134 -3.2950 -3.4959 13 14 3.4323 -3.6431 -2.3962 14 1 4.2366 -2.4083 -2.5795 15 1 3.7103 -4.5849 -3.5102 16 1 3.7943 -4.2825 -1.1056 17 6 1.0112 -2.7958 1.2607 18 7 0.6745 -4.2241 1.3275 19 6 4.9815 -1.1238 -0.0134 20 6 5.8435 0.0820 0.4183 21 6 4.9549 1.2729 -0.0068 22 1 -0.3634 0.0031 1.0277 23 1 -0.3633 0.8886 -0.5164 24 1 -0.3634 -0.8914 -0.5113 25 1 1.3386 -3.5853 -4.3179 26 1 1.5833 -2.5156 2.1452 27 1 0.0943 -2.2079 1.2197 28 1 1.5074 -4.7889 1.4005 29 1 0.0426 -4.4112 2.0915 30 1 5.0990 -1.9441 0.6948 31 1 5.2605 -1.4489 -1.0157 32 1 6.0044 0.0804 1.4963 33 1 6.7933 0.0938 -0.1163 34 1 5.0403 2.0880 0.7119 35 1 5.2284 1.6155 -1.0048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261016683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = 64.428427 kcal Electronic energy + Delta-G solvation = -17376.067954 eV Core-core repulsion = 14795.982142 eV Total energy + Delta-G solvation = -2580.085813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.74562 -36.43395 -35.12340 -32.33933 -31.40715 -30.56534 -28.61912 -26.60663 -25.27634 -24.07341 -21.47473 -20.34905 -19.35191 -18.72524 -17.00393 -16.37121 -15.54835 -14.86786 -14.29705 -13.86790 -13.48222 -13.39230 -13.17019 -13.08209 -12.84079 -12.42582 -12.04725 -11.72578 -11.49126 -11.45830 -11.24669 -11.03083 -10.93596 -10.65639 -10.16166 -9.82261 -9.34768 -8.92727 -8.68330 -8.52218 -7.85992 -7.06765 -6.06588 -4.00223 2.86890 3.17446 3.21918 3.27584 3.39410 3.89559 4.24607 4.37658 4.68305 4.80847 4.97657 5.13659 5.41980 5.47969 5.59858 5.61665 5.80993 5.88737 6.00236 6.00358 6.16741 6.28337 6.33803 6.52960 6.61132 6.71504 6.97528 7.10442 7.39426 7.59197 7.78848 7.90819 7.91881 8.12397 8.52267 8.95504 9.02167 9.55523 11.06437 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.012303 C = 0.010250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.250862 B = 2275.247229 C = 2731.118932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.004 4.004 3 N -0.480 5.480 4 C 0.143 3.857 5 N -0.481 5.481 6 C 0.049 3.951 7 C 0.075 3.925 8 H 0.035 0.965 9 C -0.466 4.466 10 H 0.085 0.915 11 C 0.075 3.925 12 N -0.893 5.893 13 Si 0.865 3.135 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.269 1.269 17 C 0.088 3.912 18 N -0.830 5.830 19 C 0.097 3.903 20 C -0.127 4.127 21 C -0.031 4.031 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.262 0.738 26 H -0.004 1.004 27 H 0.073 0.927 28 H 0.330 0.670 29 H 0.327 0.673 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 3.526 9.214 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 N -0.200 5.200 4 C -0.118 4.118 5 N -0.167 5.167 6 C -0.065 4.065 7 C 0.055 3.945 8 H 0.053 0.947 9 C -0.504 4.504 10 H 0.103 0.897 11 C -0.127 4.127 12 N -0.531 5.531 13 Si 0.694 3.306 14 H -0.205 1.205 15 H -0.215 1.215 16 H -0.194 1.194 17 C -0.043 4.043 18 N -0.357 5.357 19 C -0.025 4.025 20 C -0.165 4.165 21 C -0.070 4.070 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.423 4.166 8.274 12.521 hybrid contribution 1.923 -1.073 0.597 2.282 sum 10.347 3.093 8.871 13.975 Atomic orbital electron populations 1.20099 0.87908 1.03418 1.00439 1.20133 0.95902 0.86769 1.10344 1.69583 0.98599 1.31489 1.20369 1.23816 0.94934 0.82733 1.10269 1.46240 1.05397 1.09350 1.55734 1.22162 0.79453 0.99433 1.05413 1.17836 0.95729 0.84979 0.96002 0.94683 1.20603 0.94946 1.42971 0.91852 0.89730 1.24974 0.96837 0.95371 0.95541 1.69880 1.36193 1.47504 0.99499 0.87051 0.87604 0.78481 0.77441 1.20530 1.21471 1.19437 1.21686 0.99227 0.88558 0.94838 1.58412 1.19704 1.06354 1.51263 1.22302 0.79130 0.98110 1.02949 1.22679 0.98236 0.93147 1.02475 1.20449 0.86074 0.97495 1.03004 0.93321 0.92662 0.88979 0.92766 0.98580 0.90907 0.85880 0.86197 0.90016 0.89955 0.89847 0.88757 0.89349 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 8.83 36.01 0.32 -0.95 16 2 C 0.00 -0.10 6.91 -82.95 -0.57 -0.67 16 3 N -0.48 -10.98 11.26 -6.82 -0.08 -11.06 16 4 C 0.14 2.88 8.58 -154.86 -1.33 1.55 16 5 N -0.48 -9.95 3.61 -107.74 -0.39 -10.34 16 6 C 0.05 1.14 5.82 -81.49 -0.47 0.67 16 7 C 0.08 1.75 1.84 -92.92 -0.17 1.58 16 8 H 0.04 0.84 5.24 -51.93 -0.27 0.57 16 9 C -0.47 -12.69 7.36 -34.44 -0.25 -12.94 16 10 H 0.08 2.50 6.86 -52.49 -0.36 2.14 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 13 Si 0.87 21.45 26.94 -169.99 -4.58 16.87 16 14 H -0.28 -6.80 6.08 56.52 0.34 -6.45 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.27 -6.28 6.36 56.52 0.36 -5.92 16 17 C 0.09 1.76 5.94 -3.82 -0.02 1.73 16 18 N -0.83 -15.16 9.31 -10.37 -0.10 -15.26 16 19 C 0.10 1.55 7.77 -3.04 -0.02 1.53 16 20 C -0.13 -1.44 7.17 -25.19 -0.18 -1.62 16 21 C -0.03 -0.43 6.86 -26.64 -0.18 -0.61 16 22 H 0.05 0.89 7.98 -51.93 -0.41 0.47 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.09 2.07 5.31 -51.93 -0.28 1.79 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.00 -0.07 8.14 -51.93 -0.42 -0.50 16 27 H 0.07 1.46 6.31 -51.93 -0.33 1.14 16 28 H 0.33 5.63 9.05 -39.29 -0.36 5.28 16 29 H 0.33 4.88 9.08 -39.29 -0.36 4.52 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.38 6.77 -51.93 -0.35 1.03 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 279.06 15.07 4.21 4.21 Total: -1.00 -33.72 279.06 -8.06 -41.78 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.91 Total: 8.01 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.99 Total: -7.70 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.21 Total: -63.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.58 Total: 16.87 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.72 -8.06 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.206 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds