Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34003 * 125.99043 * 2 1 4 4 C 1.30899 * 109.30405 * 180.17904 * 3 2 1 5 5 N 1.34817 * 108.61019 * 359.89174 * 4 3 2 6 6 C 1.34560 * 125.98072 * 179.83034 * 2 1 3 7 7 C 1.50708 * 126.58316 * 0.02562 * 6 2 1 8 8 H 1.08999 * 109.47166 * 179.68132 * 7 6 2 9 9 C 1.50700 * 109.47347 * 59.67887 * 7 6 2 10 10 H 1.07997 * 120.00258 * 269.00341 * 9 7 6 11 11 C 1.37873 * 119.99733 * 89.00175 * 9 7 6 12 12 N 1.31517 * 120.00251 * 187.71590 * 11 9 7 13 13 Si 1.86799 * 120.00260 * 7.72168 * 11 9 7 14 14 H 1.48501 * 109.47140 * 275.18759 * 13 11 9 15 15 H 1.48502 * 109.47637 * 155.18658 * 13 11 9 16 16 H 1.48503 * 109.47338 * 35.18252 * 13 11 9 17 17 C 1.53007 * 109.46810 * 299.68310 * 7 6 2 18 18 N 1.46895 * 109.46967 * 185.14101 * 17 7 6 19 19 C 1.47016 * 111.17851 * 179.78794 * 5 4 3 20 20 C 1.54381 * 105.53128 * 17.11094 * 19 5 4 21 21 C 1.51567 * 141.44602 * 179.97438 * 4 3 2 22 22 H 1.09004 * 109.47311 * 270.17050 * 1 2 3 23 23 H 1.09007 * 109.46669 * 30.16424 * 1 2 3 24 24 H 1.08995 * 109.47509 * 150.16189 * 1 2 3 25 25 H 0.96992 * 120.00553 * 179.97438 * 12 11 9 26 26 H 1.09003 * 109.47042 * 305.13702 * 17 7 6 27 27 H 1.08992 * 109.47208 * 65.13814 * 17 7 6 28 28 H 1.00901 * 111.00200 * 62.08072 * 18 17 7 29 29 H 1.00897 * 110.99721 * 186.03715 * 18 17 7 30 30 H 1.08999 * 110.22812 * 136.12335 * 19 5 4 31 31 H 1.09001 * 110.23553 * 258.00649 * 19 5 4 32 32 H 1.08997 * 110.97077 * 92.40190 * 20 19 5 33 33 H 1.08997 * 110.96774 * 216.16151 * 20 19 5 34 34 H 1.09000 * 110.47964 * 44.66230 * 21 4 3 35 35 H 1.09005 * 110.58627 * 282.09452 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2945 1.0842 0.0000 4 6 3.5483 0.7084 -0.0039 5 7 3.5936 -0.6390 -0.0040 6 6 2.2975 -1.0889 0.0032 7 6 1.8460 -2.5267 0.0069 8 1 2.7175 -3.1813 0.0033 9 6 1.0116 -2.7944 -1.2191 10 1 -0.0597 -2.6626 -1.1825 11 6 1.6158 -3.2075 -2.3874 12 7 0.9134 -3.2950 -3.4959 13 14 3.4323 -3.6431 -2.3962 14 1 4.2366 -2.4083 -2.5795 15 1 3.7103 -4.5849 -3.5102 16 1 3.7943 -4.2825 -1.1056 17 6 1.0112 -2.7958 1.2607 18 7 0.6745 -4.2241 1.3275 19 6 4.9815 -1.1238 -0.0134 20 6 5.8435 0.0820 0.4183 21 6 4.9549 1.2729 -0.0068 22 1 -0.3634 0.0031 1.0277 23 1 -0.3633 0.8886 -0.5164 24 1 -0.3634 -0.8914 -0.5113 25 1 1.3386 -3.5853 -4.3179 26 1 1.5833 -2.5156 2.1452 27 1 0.0943 -2.2079 1.2197 28 1 1.5074 -4.7889 1.4005 29 1 0.0426 -4.4112 2.0915 30 1 5.0990 -1.9441 0.6948 31 1 5.2605 -1.4489 -1.0157 32 1 6.0044 0.0804 1.4963 33 1 6.7933 0.0938 -0.1163 34 1 5.0403 2.0880 0.7119 35 1 5.2284 1.6155 -1.0048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261016683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = 39.603340 kcal Electronic energy + Delta-G solvation = -17377.144451 eV Core-core repulsion = 14795.982142 eV Total energy + Delta-G solvation = -2581.162309 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.28129 -37.87380 -36.70764 -34.33331 -32.93859 -32.11901 -30.27120 -27.96386 -26.95628 -25.84238 -22.82481 -21.88824 -20.86807 -20.38017 -19.04760 -17.69712 -17.03794 -16.62275 -15.91221 -15.40454 -15.16919 -14.84119 -14.65539 -14.51868 -14.28306 -14.12135 -13.57683 -13.32782 -13.03369 -12.88165 -12.77626 -12.67245 -12.44459 -12.16616 -11.81040 -11.67927 -11.30312 -10.78428 -10.57038 -10.24412 -9.33514 -8.73697 -8.24304 -6.21080 1.16424 1.21999 1.29750 1.33236 1.97651 2.24475 2.31275 3.01605 3.11119 3.57930 3.80678 3.84346 3.95761 4.22249 4.33659 4.43277 4.51149 4.57989 4.62163 4.65239 4.80846 4.87656 4.90630 4.96580 5.06808 5.11512 5.27938 5.42911 5.58855 5.71586 6.11170 6.30507 6.40773 6.47632 6.80934 6.84351 7.33313 7.38373 8.92071 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.012303 C = 0.010250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.250862 B = 2275.247229 C = 2731.118932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.026 4.026 3 N -0.519 5.519 4 C 0.149 3.851 5 N -0.491 5.491 6 C 0.020 3.980 7 C 0.083 3.917 8 H 0.034 0.966 9 C -0.452 4.452 10 H 0.046 0.954 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.924 3.076 14 H -0.272 1.272 15 H -0.293 1.293 16 H -0.244 1.244 17 C 0.095 3.905 18 N -0.843 5.843 19 C 0.078 3.922 20 C -0.105 4.105 21 C -0.033 4.033 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.065 0.935 28 H 0.339 0.661 29 H 0.347 0.653 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 4.052 11.063 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.153 4.153 3 N -0.241 5.241 4 C -0.113 4.113 5 N -0.176 5.176 6 C -0.094 4.094 7 C 0.062 3.938 8 H 0.052 0.948 9 C -0.491 4.491 10 H 0.064 0.936 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.750 3.250 14 H -0.198 1.198 15 H -0.219 1.219 16 H -0.168 1.168 17 C -0.036 4.036 18 N -0.374 5.374 19 C -0.042 4.042 20 C -0.143 4.143 21 C -0.072 4.072 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.681 4.673 10.168 16.176 hybrid contribution 0.869 -1.162 0.074 1.453 sum 12.549 3.511 10.243 16.575 Atomic orbital electron populations 1.20008 0.87559 1.02124 1.01522 1.20482 0.96748 0.87490 1.10574 1.69571 1.00197 1.31680 1.22617 1.25120 0.96274 0.83247 1.06660 1.46558 1.06160 1.09856 1.54994 1.21860 0.81180 0.98811 1.07597 1.17682 0.95233 0.85399 0.95437 0.94848 1.20741 0.93765 1.41169 0.93394 0.93575 1.25792 1.01596 0.96030 0.95224 1.70049 1.38325 1.50168 1.00258 0.86097 0.82137 0.78424 0.78304 1.19787 1.21912 1.16753 1.21504 0.98577 0.89495 0.94016 1.58320 1.20700 1.05576 1.52761 1.22795 0.77323 1.00957 1.03161 1.22779 0.98171 0.88960 1.04405 1.20825 0.82386 0.99168 1.04793 0.91050 0.92535 0.91479 0.93109 0.96717 0.91703 0.84904 0.83971 0.88567 0.90862 0.87584 0.84861 0.86764 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.33 8.83 71.24 0.63 -1.70 16 2 C -0.03 -1.22 6.91 41.38 0.29 -0.94 16 3 N -0.52 -23.44 11.26 -175.49 -1.98 -25.41 16 4 C 0.15 5.66 8.58 138.36 1.19 6.84 16 5 N -0.49 -19.20 3.61 -494.77 -1.79 -20.99 16 6 C 0.02 0.92 5.82 40.88 0.24 1.16 16 7 C 0.08 3.84 1.84 -12.28 -0.02 3.82 16 8 H 0.03 1.54 5.24 -2.39 -0.01 1.53 16 9 C -0.45 -25.34 7.36 25.60 0.19 -25.15 16 10 H 0.05 2.88 6.86 -2.91 -0.02 2.86 16 11 C 0.01 0.58 5.47 84.65 0.46 1.04 16 12 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 13 Si 0.92 44.28 26.94 68.60 1.85 46.13 16 14 H -0.27 -12.59 6.08 99.48 0.60 -11.98 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 16 H -0.24 -10.52 6.36 99.48 0.63 -9.89 16 17 C 0.10 3.74 5.94 86.31 0.51 4.25 16 18 N -0.84 -29.91 9.31 -186.72 -1.74 -31.65 16 19 C 0.08 2.19 7.77 86.75 0.67 2.86 16 20 C -0.11 -1.78 7.17 31.59 0.23 -1.56 16 21 C -0.03 -0.75 6.86 30.65 0.21 -0.54 16 22 H 0.07 2.64 7.98 -2.38 -0.02 2.62 16 23 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 24 H 0.07 3.19 5.31 -2.39 -0.01 3.17 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 2.62 6.31 -2.39 -0.02 2.61 16 28 H 0.34 10.97 9.05 -89.69 -0.81 10.16 16 29 H 0.35 9.85 9.08 -89.70 -0.81 9.04 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.18 6.77 -2.39 -0.02 2.17 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -76.49 279.06 0.56 -75.93 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.68 Total: 25.78 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 4.59 Total: -9.91 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -5.20 Total: -137.93 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.13 kcal Total: -76.49 0.56 -75.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.537 kcal (2) G-P(sol) polarization free energy of solvation -76.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds