Wall clock time and date at job start Mon Mar 30 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99749 * 2 1 4 4 H 1.48497 * 109.46931 * 264.85212 * 3 2 1 5 5 H 1.48495 * 109.47245 * 24.85006 * 3 2 1 6 6 H 1.48503 * 109.47223 * 144.85245 * 3 2 1 7 7 C 1.37879 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00209 * 4.80201 * 7 2 1 9 9 C 1.50696 * 119.99817 * 184.79583 * 7 2 1 10 10 H 1.09001 * 109.47454 * 335.02984 * 9 7 2 11 11 C 1.53002 * 109.47289 * 95.03055 * 9 7 2 12 12 N 1.46900 * 109.47302 * 185.47193 * 11 9 7 13 13 C 1.50703 * 109.47151 * 215.02886 * 9 7 2 14 14 N 1.30782 * 125.72370 * 300.02177 * 13 9 7 15 15 C 1.34421 * 109.32093 * 179.97438 * 14 13 9 16 16 C 1.33860 * 107.79824 * 0.02562 * 15 14 13 17 17 N 1.34412 * 125.71872 * 119.71953 * 13 9 7 18 18 C 1.46475 * 128.44568 * 0.90231 * 17 13 9 19 19 C 1.53280 * 108.76361 * 162.19110 * 18 17 13 20 20 C 1.53123 * 109.70377 * 50.52913 * 19 18 17 21 21 C 1.50714 * 128.68180 * 180.02562 * 16 15 14 22 22 H 0.96991 * 120.00628 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46515 * 305.47107 * 11 9 7 24 24 H 1.09001 * 109.47265 * 65.46444 * 11 9 7 25 25 H 1.00905 * 110.99942 * 180.02562 * 12 11 9 26 26 H 1.00896 * 110.99809 * 303.94839 * 12 11 9 27 27 H 1.08001 * 126.10630 * 180.02562 * 15 14 13 28 28 H 1.08996 * 109.75797 * 42.28920 * 18 17 13 29 29 H 1.09004 * 109.37257 * 281.86172 * 18 17 13 30 30 H 1.08997 * 109.43474 * 290.46086 * 19 18 17 31 31 H 1.09003 * 109.43146 * 170.59816 * 19 18 17 32 32 H 1.09000 * 109.49458 * 170.13871 * 20 19 18 33 33 H 1.08997 * 109.50218 * 50.03934 * 20 19 18 34 34 H 1.08991 * 109.74830 * 283.93218 * 21 16 15 35 35 H 1.09005 * 109.74224 * 44.64869 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6053 1.9836 -1.3944 5 1 1.3964 2.6816 0.5883 6 1 3.4880 1.4741 0.8060 7 6 2.0046 -1.1941 0.0005 8 1 1.4674 -2.1278 -0.0773 9 6 3.5076 -1.1963 0.1096 10 1 3.9000 -0.2481 -0.2578 11 6 3.9124 -1.3828 1.5733 12 7 5.3704 -1.2542 1.6983 13 6 4.0694 -2.3257 -0.7148 14 7 3.8085 -3.5963 -0.5478 15 6 4.4839 -4.3131 -1.4626 16 6 5.1839 -3.4574 -2.2174 17 7 4.9184 -2.1957 -1.7488 18 6 5.5018 -0.9703 -2.2996 19 6 6.7196 -1.3439 -3.1520 20 6 6.3372 -2.4462 -4.1437 21 6 6.0995 -3.7556 -3.3769 22 1 -0.4850 0.8399 -0.0004 23 1 3.4268 -0.6219 2.1843 24 1 3.6044 -2.3719 1.9123 25 1 5.6632 -1.3740 2.6565 26 1 5.8442 -1.9065 1.0917 27 1 4.4652 -5.3876 -1.5697 28 1 5.8116 -0.3124 -1.4877 29 1 4.7619 -0.4650 -2.9205 30 1 7.5201 -1.7009 -2.5041 31 1 7.0619 -0.4659 -3.7000 32 1 7.1459 -2.5870 -4.8607 33 1 5.4275 -2.1608 -4.6719 34 1 7.0473 -4.1460 -3.0067 35 1 5.6319 -4.4865 -4.0367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:16 Heat of formation + Delta-G solvation = 44.478228 kcal Electronic energy + Delta-G solvation = -17219.970325 eV Core-core repulsion = 14639.019407 eV Total energy + Delta-G solvation = -2580.950918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68058 -36.44626 -35.19544 -32.50743 -32.40048 -30.19718 -29.35279 -26.67447 -23.99089 -23.60485 -21.94400 -21.47401 -19.23433 -18.33679 -16.94379 -16.21842 -15.61645 -15.05894 -14.24495 -14.09387 -13.86367 -13.77050 -13.71419 -13.27579 -13.07367 -12.71194 -12.45531 -11.75224 -11.49677 -11.05782 -10.93606 -10.92571 -10.84925 -10.62631 -10.21215 -9.90266 -9.34113 -9.04998 -8.80556 -8.61410 -8.03330 -7.41060 -6.12073 -4.13097 2.74989 3.22865 3.33494 3.38707 3.41669 3.96609 4.36331 4.64290 4.75160 4.80054 5.08525 5.12264 5.39109 5.42894 5.49911 5.57992 5.61241 5.69392 5.81184 5.85227 5.87978 6.03131 6.18956 6.26492 6.38346 6.52101 6.87239 6.97659 7.21006 7.48400 7.54600 7.81509 7.93177 8.04044 8.50197 9.00615 9.02771 9.47289 11.00347 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.009286 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.970544 B = 3014.544530 C = 3196.347000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.864 3.136 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.502 4.502 8 H 0.085 0.915 9 C 0.099 3.901 10 H 0.048 0.952 11 C 0.072 3.928 12 N -0.858 5.858 13 C 0.269 3.731 14 N -0.499 5.499 15 C -0.028 4.028 16 C -0.062 4.062 17 N -0.456 5.456 18 C 0.102 3.898 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.036 4.036 22 H 0.266 0.734 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.327 0.673 26 H 0.328 0.672 27 H 0.156 0.844 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.655 -2.355 -5.879 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.690 3.310 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.541 4.541 8 H 0.103 0.897 9 C 0.077 3.923 10 H 0.066 0.934 11 C -0.059 4.059 12 N -0.385 5.385 13 C 0.006 3.994 14 N -0.216 5.216 15 C -0.176 4.176 16 C -0.175 4.175 17 N -0.139 5.139 18 C -0.021 4.021 19 C -0.167 4.167 20 C -0.162 4.162 21 C -0.075 4.075 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.174 0.826 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.878 -1.679 -5.601 15.060 hybrid contribution 0.719 0.234 -0.413 0.861 sum 14.597 -1.445 -6.014 15.853 Atomic orbital electron populations 1.69884 1.06216 1.27078 1.49636 1.25049 0.94776 0.98688 0.94279 0.87034 0.81014 0.83922 0.79007 1.20231 1.21205 1.17781 1.20822 0.87374 0.95300 1.50642 0.89739 1.17813 0.96568 0.88686 0.89212 0.93425 1.22194 0.85231 0.99896 0.98621 1.59049 1.08424 1.59733 1.11327 1.24023 0.90954 0.94974 0.89418 1.70505 1.24118 1.01664 1.25341 1.21727 1.00184 0.98859 0.96810 1.20823 1.08067 0.85207 1.03400 1.45316 1.35903 1.06187 1.26506 1.21866 0.95709 0.86013 0.98484 1.21837 0.97113 0.99688 0.98064 1.21658 1.01922 0.94920 0.97651 1.20072 0.97191 0.97302 0.92910 0.92440 0.91094 0.94866 0.86208 0.86081 0.82614 0.89054 0.90265 0.91023 0.90105 0.91183 0.91468 0.90962 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 20.86 26.99 -169.99 -4.59 16.28 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.25 -5.91 6.82 56.52 0.39 -5.52 16 7 C -0.50 -14.31 8.84 -34.44 -0.30 -14.62 16 8 H 0.08 2.73 8.06 -52.49 -0.42 2.30 16 9 C 0.10 2.37 2.01 -92.92 -0.19 2.18 16 10 H 0.05 1.13 4.44 -51.93 -0.23 0.90 16 11 C 0.07 1.57 6.21 -3.82 -0.02 1.55 16 12 N -0.86 -15.70 9.62 -10.37 -0.10 -15.80 16 13 C 0.27 6.08 5.48 -155.75 -0.85 5.23 16 14 N -0.50 -11.61 11.27 -11.02 -0.12 -11.73 16 15 C -0.03 -0.54 11.84 -17.96 -0.21 -0.75 16 16 C -0.06 -1.07 6.57 -81.73 -0.54 -1.61 16 17 N -0.46 -8.65 3.13 -109.43 -0.34 -8.99 16 18 C 0.10 1.58 6.42 -3.91 -0.03 1.56 16 19 C -0.13 -1.47 5.91 -26.52 -0.16 -1.62 16 20 C -0.12 -1.35 5.96 -26.36 -0.16 -1.51 16 21 C -0.04 -0.45 6.31 -27.57 -0.17 -0.62 16 22 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.33 5.11 9.08 -39.29 -0.36 4.75 16 26 H 0.33 5.95 8.09 -39.29 -0.32 5.63 16 27 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 28 H 0.09 1.40 7.83 -51.93 -0.41 0.99 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 284.12 15.07 4.28 4.28 Total: -1.00 -32.34 284.12 -7.94 -40.28 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.11 Total: 10.18 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.73 Total: -8.18 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.21 Total: -62.84 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.59 Total: 16.28 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.34 -7.94 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.761 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds