Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48497 * 109.46781 * 271.10617 * 3 2 1 5 5 H 1.48497 * 109.47086 * 31.11069 * 3 2 1 6 6 H 1.48505 * 109.46883 * 151.10824 * 3 2 1 7 7 C 1.40167 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 344.40018 * 7 2 1 9 9 C 1.40236 * 119.99788 * 164.40615 * 7 2 1 10 10 C 1.39801 * 126.65895 * 340.88741 * 9 7 2 11 11 C 1.38702 * 107.53348 * 180.02562 * 10 9 7 12 12 N 1.31240 * 109.08167 * 0.02562 * 11 10 9 13 13 N 1.37458 * 126.65776 * 160.89453 * 9 7 2 14 14 C 1.46497 * 126.20627 * 0.25773 * 13 9 7 15 15 H 1.09000 * 110.01782 * 359.78194 * 14 13 9 16 16 C 1.53881 * 110.03468 * 121.16721 * 14 13 9 17 17 C 1.54265 * 106.59586 * 119.28504 * 16 14 13 18 18 C 1.54883 * 104.19828 * 23.61401 * 17 16 14 19 19 C 1.54266 * 110.03522 * 238.33510 * 14 13 9 20 20 H 1.08998 * 110.48756 * 335.78547 * 19 14 13 21 21 C 1.53001 * 110.48299 * 98.42588 * 19 14 13 22 22 N 1.46909 * 109.46884 * 185.00058 * 21 19 14 23 23 H 0.97002 * 119.99918 * 359.97438 * 1 2 3 24 24 H 1.08000 * 126.23668 * 359.97174 * 10 9 7 25 25 H 1.08004 * 125.46336 * 180.02562 * 11 10 9 26 26 H 1.09001 * 110.03444 * 238.57561 * 16 14 13 27 27 H 1.09003 * 110.03058 * 0.02562 * 16 14 13 28 28 H 1.09004 * 110.48329 * 142.29156 * 17 16 14 29 29 H 1.09004 * 110.48615 * 264.92987 * 17 16 14 30 30 H 1.09001 * 110.75602 * 80.37156 * 18 17 16 31 31 H 1.08997 * 110.75728 * 203.55688 * 18 17 16 32 32 H 1.08994 * 109.47529 * 305.00129 * 21 19 14 33 33 H 1.08996 * 109.47083 * 65.00337 * 21 19 14 34 34 H 1.00901 * 110.99534 * 180.02562 * 22 21 19 35 35 H 1.00900 * 110.99647 * 303.95287 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4657 2.0599 -1.3998 5 1 1.4510 2.6458 0.7234 6 1 3.5507 1.4335 0.6765 7 6 2.0084 -1.2139 0.0005 8 1 1.4982 -2.1318 0.2525 9 6 3.3720 -1.2364 -0.3259 10 6 4.0813 -0.2494 -1.0168 11 6 5.3969 -0.6761 -1.1212 12 7 5.5156 -1.8471 -0.5406 13 7 4.2707 -2.2332 -0.0289 14 6 3.9776 -3.4775 0.6867 15 1 2.9240 -3.5090 0.9642 16 6 4.3263 -4.6883 -0.1966 17 6 5.4091 -5.4870 0.5580 18 6 5.2101 -5.0888 2.0415 19 6 4.8606 -3.5828 1.9473 20 1 5.7662 -2.9876 1.8295 21 6 4.0814 -3.1353 3.1857 22 7 4.9756 -3.1301 4.3513 23 1 -0.4850 0.8401 0.0004 24 1 3.6781 0.6762 -1.4003 25 1 6.1958 -0.1318 -1.6030 26 1 3.4421 -5.3077 -0.3471 27 1 4.7140 -4.3501 -1.1576 28 1 5.2543 -6.5579 0.4264 29 1 6.4032 -5.1994 0.2158 30 1 4.3871 -5.6493 2.4849 31 1 6.1284 -5.2403 2.6087 32 1 3.6885 -2.1315 3.0247 33 1 3.2560 -3.8243 3.3641 34 1 4.4840 -2.8382 5.1827 35 1 5.4031 -4.0345 4.4831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = 51.227553 kcal Electronic energy + Delta-G solvation = -17098.381853 eV Core-core repulsion = 14517.723607 eV Total energy + Delta-G solvation = -2580.658246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55117 -37.73925 -33.92838 -33.58074 -31.11355 -29.67004 -28.49804 -26.71092 -24.88527 -23.24990 -20.75044 -20.40409 -19.70858 -18.30517 -17.09370 -15.95592 -15.75036 -14.96243 -14.58216 -14.13958 -13.79570 -13.54161 -13.06809 -12.76036 -12.68269 -12.30880 -12.14489 -11.61128 -11.17843 -10.96997 -10.85731 -10.74665 -10.42737 -10.33228 -10.26337 -10.15185 -9.72658 -9.30267 -8.91776 -8.52587 -7.95177 -7.09736 -6.93898 -4.57942 3.01029 3.22853 3.37531 3.52146 3.89357 4.07820 4.19997 4.63472 4.88489 5.03187 5.11289 5.19045 5.57104 5.64580 5.69216 5.79910 5.85977 5.87873 6.01027 6.12013 6.22372 6.28186 6.36654 6.54569 6.61153 6.70687 6.93057 7.00022 7.22009 7.29845 7.41811 7.57511 7.87483 8.22655 8.29395 8.58400 8.97072 9.40305 10.07998 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.009112 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.297319 B = 3072.014089 C = 3381.870816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.100 3.900 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.299 1.299 6 H -0.242 1.242 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.259 3.741 10 C -0.427 4.427 11 C 0.063 3.937 12 N -0.373 5.373 13 N -0.413 5.413 14 C 0.185 3.815 15 H 0.095 0.905 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.095 4.095 20 H 0.097 0.903 21 C 0.069 3.931 22 N -0.848 5.848 23 H 0.287 0.713 24 H 0.116 0.884 25 H 0.149 0.851 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.337 0.663 35 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -6.570 4.768 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.121 4.121 3 Si 0.752 3.248 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.165 1.165 7 C -0.487 4.487 8 H 0.106 0.894 9 C 0.139 3.861 10 C -0.457 4.457 11 C -0.120 4.120 12 N -0.194 5.194 13 N -0.200 5.200 14 C 0.080 3.920 15 H 0.113 0.887 16 C -0.170 4.170 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.115 4.115 20 H 0.115 0.885 21 C -0.062 4.062 22 N -0.377 5.377 23 H 0.097 0.903 24 H 0.133 0.867 25 H 0.167 0.833 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.149 0.851 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.068 -6.991 4.708 10.385 hybrid contribution -1.161 0.772 0.026 1.395 sum 4.906 -6.219 4.734 9.228 Atomic orbital electron populations 1.69593 1.08011 1.30412 1.35561 1.25890 0.94654 1.01480 0.90058 0.86160 0.80583 0.78867 0.79203 1.19675 1.22781 1.16503 1.18385 0.90301 0.96266 1.43784 0.89442 1.18771 0.90262 0.86336 0.90771 1.21055 0.95300 1.05420 1.23920 1.22856 0.96411 0.94030 0.98672 1.76848 1.02712 1.16302 1.23557 1.48544 1.05634 1.16564 1.49246 1.21370 0.99121 0.81585 0.89908 0.88735 1.22497 0.98546 0.96013 0.99975 1.22256 0.99486 0.98735 0.94939 1.22534 1.00809 0.95594 0.96843 1.22348 1.00011 0.96005 0.93089 0.88515 1.21848 0.92943 1.01453 0.89930 1.58703 1.37631 1.34520 1.06880 0.90280 0.86691 0.83324 0.91799 0.90615 0.92176 0.91410 0.91985 0.91621 0.90352 0.95681 0.85066 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.35 13.92 55.56 0.77 -20.58 16 2 C 0.10 2.63 5.51 -17.28 -0.10 2.54 16 3 Si 0.92 21.55 24.53 -169.99 -4.17 17.38 16 4 H -0.27 -6.21 6.69 56.52 0.38 -5.83 16 5 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.89 6.56 56.52 0.37 -5.52 16 7 C -0.45 -12.12 9.45 -38.11 -0.36 -12.48 16 8 H 0.09 2.40 7.23 -52.49 -0.38 2.02 16 9 C 0.26 6.75 6.31 -84.01 -0.53 6.22 16 10 C -0.43 -10.91 8.12 -38.83 -0.32 -11.22 16 11 C 0.06 1.50 11.93 -17.63 -0.21 1.29 16 12 N -0.37 -8.97 12.01 30.45 0.37 -8.60 16 13 N -0.41 -9.79 3.28 -51.07 -0.17 -9.96 16 14 C 0.18 3.61 3.29 -66.81 -0.22 3.39 16 15 H 0.09 1.90 6.59 -51.93 -0.34 1.55 16 16 C -0.13 -2.25 6.54 -25.61 -0.17 -2.41 16 17 C -0.12 -1.64 6.83 -25.08 -0.17 -1.81 16 18 C -0.12 -1.61 5.69 -24.74 -0.14 -1.75 16 19 C -0.09 -1.62 2.78 -88.96 -0.25 -1.86 16 20 H 0.10 1.95 7.75 -51.93 -0.40 1.55 16 21 C 0.07 1.10 6.12 -3.82 -0.02 1.08 16 22 N -0.85 -11.57 9.62 -10.37 -0.10 -11.67 16 23 H 0.29 6.88 8.29 -40.82 -0.34 6.54 16 24 H 0.12 2.89 4.24 -52.49 -0.22 2.67 16 25 H 0.15 2.94 8.06 -52.48 -0.42 2.52 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.46 7.81 -51.93 -0.41 1.06 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.75 7.97 -51.93 -0.41 0.34 16 31 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.02 0.37 8.02 -51.93 -0.42 -0.05 16 34 H 0.34 3.94 9.08 -39.29 -0.36 3.59 16 35 H 0.33 3.88 8.28 -39.29 -0.33 3.55 16 LS Contribution 280.23 15.07 4.22 4.22 Total: -1.00 -29.12 280.23 -6.54 -35.66 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -4.98 Total: 10.59 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.48 Total: -17.04 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.87 Total: -50.81 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.17 Total: 17.38 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.12 -6.54 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.885 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds