Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48497 * 109.46781 * 271.10617 * 3 2 1 5 5 H 1.48497 * 109.47086 * 31.11069 * 3 2 1 6 6 H 1.48505 * 109.46883 * 151.10824 * 3 2 1 7 7 C 1.40167 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 344.40018 * 7 2 1 9 9 C 1.40236 * 119.99788 * 164.40615 * 7 2 1 10 10 C 1.39801 * 126.65895 * 340.88741 * 9 7 2 11 11 C 1.38702 * 107.53348 * 180.02562 * 10 9 7 12 12 N 1.31240 * 109.08167 * 0.02562 * 11 10 9 13 13 N 1.37458 * 126.65776 * 160.89453 * 9 7 2 14 14 C 1.46497 * 126.20627 * 0.25773 * 13 9 7 15 15 H 1.09000 * 110.01782 * 359.78194 * 14 13 9 16 16 C 1.53881 * 110.03468 * 121.16721 * 14 13 9 17 17 C 1.54265 * 106.59586 * 119.28504 * 16 14 13 18 18 C 1.54883 * 104.19828 * 23.61401 * 17 16 14 19 19 C 1.54266 * 110.03522 * 238.33510 * 14 13 9 20 20 H 1.08998 * 110.48756 * 335.78547 * 19 14 13 21 21 C 1.53001 * 110.48299 * 98.42588 * 19 14 13 22 22 N 1.46909 * 109.46884 * 185.00058 * 21 19 14 23 23 H 0.97002 * 119.99918 * 359.97438 * 1 2 3 24 24 H 1.08000 * 126.23668 * 359.97174 * 10 9 7 25 25 H 1.08004 * 125.46336 * 180.02562 * 11 10 9 26 26 H 1.09001 * 110.03444 * 238.57561 * 16 14 13 27 27 H 1.09003 * 110.03058 * 0.02562 * 16 14 13 28 28 H 1.09004 * 110.48329 * 142.29156 * 17 16 14 29 29 H 1.09004 * 110.48615 * 264.92987 * 17 16 14 30 30 H 1.09001 * 110.75602 * 80.37156 * 18 17 16 31 31 H 1.08997 * 110.75728 * 203.55688 * 18 17 16 32 32 H 1.08994 * 109.47529 * 305.00129 * 21 19 14 33 33 H 1.08996 * 109.47083 * 65.00337 * 21 19 14 34 34 H 1.00901 * 110.99534 * 180.02562 * 22 21 19 35 35 H 1.00900 * 110.99647 * 303.95287 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4657 2.0599 -1.3998 5 1 1.4510 2.6458 0.7234 6 1 3.5507 1.4335 0.6765 7 6 2.0084 -1.2139 0.0005 8 1 1.4982 -2.1318 0.2525 9 6 3.3720 -1.2364 -0.3259 10 6 4.0813 -0.2494 -1.0168 11 6 5.3969 -0.6761 -1.1212 12 7 5.5156 -1.8471 -0.5406 13 7 4.2707 -2.2332 -0.0289 14 6 3.9776 -3.4775 0.6867 15 1 2.9240 -3.5090 0.9642 16 6 4.3263 -4.6883 -0.1966 17 6 5.4091 -5.4870 0.5580 18 6 5.2101 -5.0888 2.0415 19 6 4.8606 -3.5828 1.9473 20 1 5.7662 -2.9876 1.8295 21 6 4.0814 -3.1353 3.1857 22 7 4.9756 -3.1301 4.3513 23 1 -0.4850 0.8401 0.0004 24 1 3.6781 0.6762 -1.4003 25 1 6.1958 -0.1318 -1.6030 26 1 3.4421 -5.3077 -0.3471 27 1 4.7140 -4.3501 -1.1576 28 1 5.2543 -6.5579 0.4264 29 1 6.4032 -5.1994 0.2158 30 1 4.3871 -5.6493 2.4849 31 1 6.1284 -5.2403 2.6087 32 1 3.6885 -2.1315 3.0247 33 1 3.2560 -3.8243 3.3641 34 1 4.4840 -2.8382 5.1827 35 1 5.4031 -4.0345 4.4831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = 30.685264 kcal Electronic energy + Delta-G solvation = -17099.272633 eV Core-core repulsion = 14517.723607 eV Total energy + Delta-G solvation = -2581.549026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33314 -39.20655 -35.59427 -35.15939 -32.79385 -31.59408 -29.76936 -28.23764 -26.88204 -24.58782 -22.38779 -22.11712 -21.16327 -19.97492 -18.97632 -17.84408 -16.98376 -16.51520 -15.93775 -15.60360 -15.46187 -15.22696 -14.83465 -14.27580 -14.20452 -13.85316 -13.66735 -13.54092 -12.98614 -12.47917 -12.42877 -12.15400 -12.05359 -11.76956 -11.65587 -11.57547 -11.48815 -11.24489 -10.83537 -9.86430 -9.65247 -9.02068 -8.93994 -6.62481 1.09976 1.32416 1.49386 1.61824 2.14911 2.17079 2.27486 3.09456 3.37042 3.62874 3.81475 3.86254 4.21084 4.28464 4.33274 4.40019 4.50005 4.62437 4.70337 4.76780 4.84343 4.94951 5.00670 5.05488 5.15080 5.24481 5.28160 5.30487 5.44372 5.47338 5.93558 6.15714 6.18772 6.41703 6.56933 6.62604 7.02265 7.47647 8.12837 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.009112 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.297319 B = 3072.014089 C = 3381.870816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.069 3.931 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.472 4.472 8 H 0.066 0.934 9 C 0.237 3.763 10 C -0.443 4.443 11 C 0.058 3.942 12 N -0.375 5.375 13 N -0.412 5.412 14 C 0.168 3.832 15 H 0.081 0.919 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.107 4.107 19 C -0.088 4.088 20 H 0.065 0.935 21 C 0.076 3.924 22 N -0.851 5.851 23 H 0.298 0.702 24 H 0.118 0.882 25 H 0.187 0.813 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.350 0.650 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -7.444 5.438 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.150 4.150 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.508 4.508 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.473 4.473 11 C -0.126 4.126 12 N -0.196 5.196 13 N -0.199 5.199 14 C 0.065 3.935 15 H 0.099 0.901 16 C -0.167 4.167 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.108 4.108 20 H 0.083 0.917 21 C -0.055 4.055 22 N -0.383 5.383 23 H 0.108 0.892 24 H 0.135 0.865 25 H 0.204 0.796 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.163 0.837 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.241 -7.894 5.395 11.994 hybrid contribution -1.499 0.985 -0.177 1.802 sum 5.743 -6.909 5.218 10.390 Atomic orbital electron populations 1.69592 1.08718 1.31745 1.36254 1.26469 0.95266 1.03530 0.89705 0.85382 0.78773 0.76365 0.79417 1.18824 1.20825 1.18488 1.18379 0.90944 0.96069 1.45437 0.91562 1.18923 0.90423 0.87699 0.91431 1.21306 0.96302 1.05606 1.24094 1.23422 0.96789 0.93873 0.98470 1.76795 1.03036 1.16596 1.23167 1.48895 1.05026 1.17255 1.48707 1.21795 0.99135 0.81098 0.91491 0.90071 1.22470 1.00296 0.95454 0.98498 1.22236 0.97687 1.00044 0.94607 1.22514 1.02617 0.92415 0.96891 1.22222 0.97921 0.98527 0.92098 0.91667 1.21631 0.93686 0.99452 0.90704 1.58589 1.37330 1.35781 1.06623 0.89160 0.86469 0.79569 0.90251 0.93271 0.88947 0.92237 0.89760 0.89491 0.94414 0.94056 0.83691 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.66 13.92 21.87 0.30 -44.35 16 2 C 0.07 3.67 5.51 85.32 0.47 4.14 16 3 Si 0.98 44.54 24.53 68.60 1.68 46.22 16 4 H -0.26 -11.56 6.69 99.48 0.67 -10.89 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -12.61 6.56 99.48 0.65 -11.96 16 7 C -0.47 -26.26 9.45 23.22 0.22 -26.04 16 8 H 0.07 3.83 7.23 -2.91 -0.02 3.81 16 9 C 0.24 12.65 6.31 39.13 0.25 12.90 16 10 C -0.44 -22.66 8.12 22.76 0.18 -22.48 16 11 C 0.06 2.68 11.93 84.89 1.01 3.69 16 12 N -0.38 -17.96 12.01 -57.57 -0.69 -18.65 16 13 N -0.41 -19.88 3.28 -315.49 -1.03 -20.92 16 14 C 0.17 6.62 3.29 45.72 0.15 6.77 16 15 H 0.08 3.37 6.59 -2.39 -0.02 3.36 16 16 C -0.13 -4.28 6.54 31.32 0.20 -4.07 16 17 C -0.11 -2.75 6.83 31.67 0.22 -2.53 16 18 C -0.11 -2.54 5.69 31.88 0.18 -2.35 16 19 C -0.09 -2.93 2.78 -9.72 -0.03 -2.96 16 20 H 0.06 2.61 7.75 -2.39 -0.02 2.59 16 21 C 0.08 2.41 6.12 86.30 0.53 2.94 16 22 N -0.85 -21.81 9.62 -186.71 -1.80 -23.61 16 23 H 0.30 14.28 8.29 -92.71 -0.77 13.51 16 24 H 0.12 5.84 4.24 -2.91 -0.01 5.83 16 25 H 0.19 6.96 8.06 -2.91 -0.02 6.94 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.05 1.89 7.81 -2.39 -0.02 1.87 16 28 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.69 7.97 -2.39 -0.02 1.67 16 31 H 0.09 1.76 8.05 -2.39 -0.02 1.75 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.16 8.02 -2.39 -0.02 1.14 16 34 H 0.35 7.59 9.08 -89.69 -0.81 6.78 16 35 H 0.35 7.13 8.28 -89.69 -0.74 6.38 16 Total: -1.00 -63.80 280.23 1.31 -62.50 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.55 Total: 28.80 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 3.39 Total: -29.98 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.22 Total: -107.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.68 Total: 46.22 kcal Total: -63.80 1.31 -62.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.182 kcal (2) G-P(sol) polarization free energy of solvation -63.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds