Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35254 * 126.06813 * 2 1 4 4 C 1.40433 * 107.86151 * 180.13815 * 3 2 1 5 5 N 1.39985 * 125.97423 * 179.82453 * 4 3 2 6 6 C 1.47897 * 111.00023 * 299.84053 * 5 4 3 7 7 C 1.54002 * 107.05615 * 145.84439 * 6 5 4 8 8 C 1.54601 * 105.13926 * 358.77756 * 7 6 5 9 9 H 1.08995 * 110.72362 * 96.57695 * 8 7 6 10 10 C 1.50698 * 110.72067 * 219.68472 * 8 7 6 11 11 H 1.08005 * 119.99819 * 116.14779 * 10 8 7 12 12 C 1.37875 * 120.00046 * 296.14120 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.48734 * 111.04083 * 57.42304 * 5 4 3 19 19 N 1.31227 * 108.04346 * 359.56634 * 4 3 2 20 20 N 1.34956 * 126.07133 * 179.65491 * 2 1 3 21 21 C 1.46509 * 125.96747 * 0.02562 * 20 2 1 22 22 H 1.09004 * 109.47218 * 270.34705 * 1 2 3 23 23 H 1.09004 * 109.47499 * 30.34592 * 1 2 3 24 24 H 1.08995 * 109.47554 * 150.34573 * 1 2 3 25 25 H 1.07995 * 126.07107 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.91953 * 26.49955 * 6 5 4 27 27 H 1.08999 * 110.08626 * 265.28603 * 6 5 4 28 28 H 1.08996 * 110.30938 * 239.85911 * 7 6 5 29 29 H 1.08999 * 110.31078 * 117.68884 * 7 6 5 30 30 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 31 31 H 1.08999 * 110.84131 * 81.95871 * 18 5 4 32 32 H 1.08999 * 110.58247 * 318.76375 * 18 5 4 33 33 H 1.09003 * 109.46856 * 270.02129 * 21 20 2 34 34 H 1.09001 * 109.47057 * 30.02490 * 21 20 2 35 35 H 1.08998 * 109.46910 * 150.02613 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6373 0.6545 -0.0032 5 7 4.7724 1.4737 -0.0077 6 6 4.7966 2.3392 -1.2068 7 6 5.4361 3.6756 -0.7864 8 6 5.7395 3.5213 0.7217 9 1 6.7759 3.2222 0.8779 10 6 5.4385 4.8002 1.4597 11 1 4.6613 4.8210 2.2094 12 6 6.1555 5.9438 1.1781 13 7 7.1016 5.9186 0.2651 14 14 5.7828 7.5289 2.0935 15 1 6.6855 8.6041 1.6093 16 1 5.9949 7.3218 3.5487 17 1 4.3714 7.9212 1.8499 18 6 4.7713 2.3941 1.1607 19 7 3.6336 -0.6577 0.0044 20 7 2.3016 -1.0908 0.0066 21 6 1.8498 -2.4845 0.0144 22 1 -0.3634 0.0062 1.0277 23 1 -0.3634 0.8869 -0.5192 24 1 -0.3634 -0.8930 -0.5084 25 1 1.9720 2.1212 -0.0004 26 1 3.7804 2.5096 -1.5624 27 1 5.3917 1.8738 -1.9925 28 1 4.7383 4.4969 -0.9498 29 1 6.3582 3.8453 -1.3423 30 1 7.2954 5.0954 -0.2100 31 1 5.1462 1.8902 2.0515 32 1 3.7715 2.7917 1.3344 33 1 1.7370 -2.8240 1.0441 34 1 0.8915 -2.5587 -0.4997 35 1 2.5848 -3.1075 -0.4951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = 80.565001 kcal Electronic energy + Delta-G solvation = -16557.352234 eV Core-core repulsion = 13977.966156 eV Total energy + Delta-G solvation = -2579.386078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.14498 -38.02024 -33.99561 -32.45932 -31.94432 -29.49126 -28.26273 -26.95564 -25.81359 -24.01912 -21.65702 -19.88255 -19.69210 -19.15429 -16.95098 -16.42785 -15.59828 -14.97869 -14.85613 -14.00696 -13.74719 -13.47705 -13.31867 -13.17573 -12.63080 -12.51209 -12.44003 -12.08430 -11.68155 -11.56648 -11.05598 -10.78647 -10.57127 -10.41677 -10.08240 -9.82012 -9.50455 -8.82991 -8.46781 -8.34080 -8.27060 -7.94228 -6.30854 -4.03207 1.97615 2.54403 2.93380 3.46143 3.47667 3.66460 4.25851 4.56572 4.62258 4.76732 4.93964 5.03688 5.25782 5.34469 5.41216 5.57598 5.65273 5.72947 5.87680 5.90920 6.07259 6.11592 6.25466 6.42758 6.64608 6.69053 6.91257 6.94122 7.13501 7.25337 7.38857 7.64489 7.75854 8.14961 8.27449 8.46118 8.91534 9.69140 11.07949 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.044638 B = 0.005608 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.118910 B = 4991.949804 C = 5285.850047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.079 3.921 3 C -0.293 4.293 4 C 0.260 3.740 5 N -0.465 5.465 6 C 0.050 3.950 7 C -0.120 4.120 8 C 0.038 3.962 9 H 0.032 0.968 10 C -0.595 4.595 11 H 0.050 0.950 12 C 0.022 3.978 13 N -0.911 5.911 14 Si 1.067 2.933 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.063 3.937 19 N -0.282 5.282 20 N -0.380 5.380 21 C 0.106 3.894 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.145 0.855 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.273 0.727 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -12.208 -1.753 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.325 4.325 4 C 0.002 3.998 5 N -0.189 5.189 6 C -0.077 4.077 7 C -0.159 4.159 8 C 0.018 3.982 9 H 0.050 0.950 10 C -0.634 4.634 11 H 0.068 0.932 12 C -0.183 4.183 13 N -0.547 5.547 14 Si 0.896 3.104 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.216 1.216 18 C -0.064 4.064 19 N -0.105 5.105 20 N -0.164 5.164 21 C -0.036 4.036 22 H 0.097 0.903 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.163 0.837 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.762 -12.186 -1.611 17.013 hybrid contribution -1.712 -0.543 -0.169 1.805 sum -13.475 -12.730 -1.780 18.622 Atomic orbital electron populations 1.20419 0.87589 1.03509 1.03158 1.20913 0.94409 0.87352 1.02050 1.21773 0.93364 0.99303 1.18072 1.21059 0.90068 0.90963 0.97680 1.61919 1.32161 1.19805 1.04985 1.22900 0.99495 0.93850 0.91447 1.22652 0.99678 0.93598 0.99946 1.19714 0.94517 0.92919 0.91013 0.95016 1.21893 1.22356 0.95131 1.23996 0.93214 1.25760 0.93577 1.02174 0.96804 1.70777 1.29645 1.31307 1.22962 0.83567 0.75832 0.75495 0.75527 1.20822 1.21480 1.21551 1.23356 1.00030 0.92082 0.90900 1.77426 0.94949 1.12083 1.26006 1.48324 1.03685 1.05679 1.58761 1.21742 1.00588 0.78205 1.03027 0.90329 0.89741 0.91404 0.83717 0.94208 0.91477 0.91731 0.92414 0.91538 0.91475 0.93611 0.91058 0.89853 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.11 36.00 0.36 -0.42 16 2 C 0.08 1.12 6.92 -82.28 -0.57 0.55 16 3 C -0.29 -5.09 9.06 -39.82 -0.36 -5.45 16 4 C 0.26 5.21 6.18 -154.55 -0.96 4.25 16 5 N -0.46 -10.05 5.38 -168.65 -0.91 -10.96 16 6 C 0.05 1.04 6.62 -2.75 -0.02 1.02 16 7 C -0.12 -2.80 5.47 -25.37 -0.14 -2.94 16 8 C 0.04 0.96 2.57 -89.91 -0.23 0.73 16 9 H 0.03 0.88 8.00 -51.93 -0.42 0.46 16 10 C -0.60 -16.59 8.40 -34.44 -0.29 -16.88 16 11 H 0.05 1.38 7.78 -52.48 -0.41 0.97 16 12 C 0.02 0.61 5.34 -17.82 -0.10 0.51 16 13 N -0.91 -27.14 13.45 55.43 0.75 -26.40 16 14 Si 1.07 24.96 29.90 -169.99 -5.08 19.88 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.06 1.43 5.92 -1.78 -0.01 1.42 16 19 N -0.28 -5.43 12.59 31.41 0.40 -5.03 16 20 N -0.38 -5.61 4.01 -63.89 -0.26 -5.87 16 21 C 0.11 0.96 11.27 59.85 0.67 1.63 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.45 7.07 -51.93 -0.37 0.08 16 25 H 0.15 2.44 7.99 -52.49 -0.42 2.02 16 26 H 0.04 0.77 7.14 -51.93 -0.37 0.40 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.58 7.84 -51.93 -0.41 1.17 16 29 H 0.06 1.37 7.07 -51.93 -0.37 1.00 16 30 H 0.27 8.06 5.66 -40.82 -0.23 7.83 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.05 1.04 7.21 -51.93 -0.37 0.66 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.50 7.04 -51.93 -0.37 0.14 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -32.87 286.18 -7.48 -40.36 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.06 Total: -0.73 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.63 Total: -15.56 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.02 Total: -48.26 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.87 -7.48 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.922 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds