Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35254 * 126.06813 * 2 1 4 4 C 1.40433 * 107.86151 * 180.13815 * 3 2 1 5 5 N 1.39985 * 125.97423 * 179.82453 * 4 3 2 6 6 C 1.47897 * 111.00023 * 299.84053 * 5 4 3 7 7 C 1.54002 * 107.05615 * 145.84439 * 6 5 4 8 8 C 1.54601 * 105.13926 * 358.77756 * 7 6 5 9 9 H 1.08995 * 110.72362 * 96.57695 * 8 7 6 10 10 C 1.50698 * 110.72067 * 219.68472 * 8 7 6 11 11 H 1.08005 * 119.99819 * 116.14779 * 10 8 7 12 12 C 1.37875 * 120.00046 * 296.14120 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.48734 * 111.04083 * 57.42304 * 5 4 3 19 19 N 1.31227 * 108.04346 * 359.56634 * 4 3 2 20 20 N 1.34956 * 126.07133 * 179.65491 * 2 1 3 21 21 C 1.46509 * 125.96747 * 0.02562 * 20 2 1 22 22 H 1.09004 * 109.47218 * 270.34705 * 1 2 3 23 23 H 1.09004 * 109.47499 * 30.34592 * 1 2 3 24 24 H 1.08995 * 109.47554 * 150.34573 * 1 2 3 25 25 H 1.07995 * 126.07107 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.91953 * 26.49955 * 6 5 4 27 27 H 1.08999 * 110.08626 * 265.28603 * 6 5 4 28 28 H 1.08996 * 110.30938 * 239.85911 * 7 6 5 29 29 H 1.08999 * 110.31078 * 117.68884 * 7 6 5 30 30 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 31 31 H 1.08999 * 110.84131 * 81.95871 * 18 5 4 32 32 H 1.08999 * 110.58247 * 318.76375 * 18 5 4 33 33 H 1.09003 * 109.46856 * 270.02129 * 21 20 2 34 34 H 1.09001 * 109.47057 * 30.02490 * 21 20 2 35 35 H 1.08998 * 109.46910 * 150.02613 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 6 3.6373 0.6545 -0.0032 5 7 4.7724 1.4737 -0.0077 6 6 4.7966 2.3392 -1.2068 7 6 5.4361 3.6756 -0.7864 8 6 5.7395 3.5213 0.7217 9 1 6.7759 3.2222 0.8779 10 6 5.4385 4.8002 1.4597 11 1 4.6613 4.8210 2.2094 12 6 6.1555 5.9438 1.1781 13 7 7.1016 5.9186 0.2651 14 14 5.7828 7.5289 2.0935 15 1 6.6855 8.6041 1.6093 16 1 5.9949 7.3218 3.5487 17 1 4.3714 7.9212 1.8499 18 6 4.7713 2.3941 1.1607 19 7 3.6336 -0.6577 0.0044 20 7 2.3016 -1.0908 0.0066 21 6 1.8498 -2.4845 0.0144 22 1 -0.3634 0.0062 1.0277 23 1 -0.3634 0.8869 -0.5192 24 1 -0.3634 -0.8930 -0.5084 25 1 1.9720 2.1212 -0.0004 26 1 3.7804 2.5096 -1.5624 27 1 5.3917 1.8738 -1.9925 28 1 4.7383 4.4969 -0.9498 29 1 6.3582 3.8453 -1.3423 30 1 7.2954 5.0954 -0.2100 31 1 5.1462 1.8902 2.0515 32 1 3.7715 2.7917 1.3344 33 1 1.7370 -2.8240 1.0441 34 1 0.8915 -2.5587 -0.4997 35 1 2.5848 -3.1075 -0.4951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = 58.831854 kcal Electronic energy + Delta-G solvation = -16558.294654 eV Core-core repulsion = 13977.966156 eV Total energy + Delta-G solvation = -2580.328498 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.40620 -39.74816 -35.75589 -33.99305 -32.93148 -31.21581 -30.13750 -27.96020 -26.98633 -26.04128 -23.30223 -21.67087 -21.11281 -20.57933 -18.86328 -17.75089 -16.87498 -16.56064 -16.39390 -15.63185 -15.17560 -14.94499 -14.61017 -14.23111 -13.97695 -13.86289 -13.67904 -13.32113 -13.06529 -12.91034 -12.86071 -12.62677 -12.37698 -11.92880 -11.81007 -11.77224 -11.45793 -10.60315 -10.47884 -10.05751 -9.59544 -9.51806 -8.57177 -6.30719 0.78814 1.48801 1.55975 1.57567 1.64629 1.83949 2.59980 2.84165 3.23043 3.67479 3.79209 3.94215 4.11409 4.22789 4.25839 4.38763 4.39044 4.51864 4.59325 4.66212 4.68752 4.74521 4.75108 4.96568 4.98255 5.03624 5.09562 5.26739 5.34868 5.53621 5.64101 6.11972 6.12764 6.21055 6.24340 6.65681 6.77767 7.50159 8.81994 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.044638 B = 0.005608 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.118910 B = 4991.949804 C = 5285.850047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.102 3.898 3 C -0.326 4.326 4 C 0.231 3.769 5 N -0.475 5.475 6 C 0.062 3.938 7 C -0.107 4.107 8 C 0.029 3.971 9 H 0.001 0.999 10 C -0.608 4.608 11 H 0.048 0.952 12 C -0.026 4.026 13 N -0.935 5.935 14 Si 1.115 2.885 15 H -0.285 1.285 16 H -0.273 1.273 17 H -0.270 1.270 18 C 0.078 3.922 19 N -0.320 5.320 20 N -0.372 5.372 21 C 0.092 3.908 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.141 0.859 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.203 -13.315 -1.595 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C -0.358 4.358 4 C -0.026 4.026 5 N -0.199 5.199 6 C -0.066 4.066 7 C -0.146 4.146 8 C 0.010 3.990 9 H 0.019 0.981 10 C -0.646 4.646 11 H 0.066 0.934 12 C -0.225 4.225 13 N -0.572 5.572 14 Si 0.937 3.063 15 H -0.210 1.210 16 H -0.198 1.198 17 H -0.195 1.195 18 C -0.048 4.048 19 N -0.144 5.144 20 N -0.156 5.156 21 C -0.047 4.047 22 H 0.114 0.886 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.159 0.841 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.640 -13.341 -1.457 19.861 hybrid contribution -0.894 -0.376 -0.216 0.993 sum -15.534 -13.718 -1.673 20.791 Atomic orbital electron populations 1.20640 0.83314 1.05590 1.04847 1.21612 0.96631 0.85987 0.98440 1.21807 0.92773 1.00346 1.20859 1.21006 0.90334 0.91274 0.99949 1.61739 1.34284 1.19548 1.04337 1.22784 1.00060 0.92183 0.91550 1.22407 0.98994 0.94874 0.98354 1.19660 0.93492 0.93326 0.92544 0.98058 1.22209 1.22189 0.96186 1.24044 0.93354 1.27206 0.92835 1.05646 0.96797 1.70890 1.31097 1.30888 1.24298 0.82958 0.76567 0.71697 0.75108 1.21033 1.19825 1.19501 1.23057 0.98941 0.91421 0.91428 1.77285 0.98202 1.11783 1.27158 1.48771 1.02283 1.07834 1.56735 1.22268 1.02381 0.75228 1.04871 0.88578 0.88828 0.88217 0.84127 0.92918 0.90350 0.93126 0.93454 0.92734 0.92033 0.93674 0.89325 0.85838 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.11 71.23 0.72 -0.41 16 2 C 0.10 2.60 6.92 41.39 0.29 2.89 16 3 C -0.33 -11.03 9.06 22.12 0.20 -10.83 16 4 C 0.23 9.23 6.18 133.39 0.82 10.06 16 5 N -0.48 -20.99 5.38 -687.47 -3.70 -24.69 16 6 C 0.06 2.58 6.62 86.45 0.57 3.15 16 7 C -0.11 -5.21 5.47 31.48 0.17 -5.03 16 8 C 0.03 1.55 2.57 -10.33 -0.03 1.52 16 9 H 0.00 0.07 8.00 -2.39 -0.02 0.06 16 10 C -0.61 -34.65 8.40 25.60 0.22 -34.43 16 11 H 0.05 2.71 7.78 -2.91 -0.02 2.68 16 12 C -0.03 -1.49 5.34 84.65 0.45 -1.03 16 13 N -0.93 -57.07 13.45 21.45 0.29 -56.79 16 14 Si 1.11 50.13 29.90 68.60 2.05 52.19 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.08 3.69 5.92 86.61 0.51 4.20 16 19 N -0.32 -12.12 12.59 -54.54 -0.69 -12.81 16 20 N -0.37 -10.03 4.01 -356.05 -1.43 -11.46 16 21 C 0.09 1.31 11.27 127.77 1.44 2.75 16 22 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.10 0.72 7.07 -2.39 -0.02 0.70 16 25 H 0.14 4.71 7.99 -2.91 -0.02 4.69 16 26 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 27 H 0.08 3.08 8.14 -2.39 -0.02 3.07 16 28 H 0.05 2.55 7.84 -2.39 -0.02 2.53 16 29 H 0.05 2.34 7.07 -2.39 -0.02 2.32 16 30 H 0.26 16.13 5.66 -92.71 -0.52 15.60 16 31 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.04 2.10 7.21 -2.39 -0.02 2.08 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 0.80 7.04 -2.39 -0.02 0.78 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.55 286.18 3.20 -70.35 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.31 Total: 10.38 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 5.37 Total: -27.16 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.53 Total: -105.75 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.19 kcal Total: -73.55 3.20 -70.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.182 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds