Wall clock time and date at job start Mon Mar 30 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32340 * 120.44452 * 2 1 4 4 C 1.31797 * 120.81663 * 180.28621 * 3 2 1 5 5 N 1.31793 * 121.75229 * 359.71754 * 4 3 2 6 6 C 1.32333 * 120.82192 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.44805 * 180.02562 * 6 5 4 8 8 C 1.38591 * 120.45138 * 179.72645 * 2 1 3 9 9 C 1.50703 * 120.79914 * 359.97438 * 8 2 1 10 10 N 1.46901 * 109.47092 * 278.14500 * 9 8 2 11 11 C 1.46905 * 110.99801 * 291.77616 * 10 9 8 12 12 C 1.46893 * 110.99896 * 167.82259 * 10 9 8 13 13 C 1.50707 * 109.46837 * 189.99715 * 12 10 9 14 14 H 1.07993 * 119.99998 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99809 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99873 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47365 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47091 * 120.00649 * 17 15 13 20 20 H 1.48497 * 109.47608 * 240.00317 * 17 15 13 21 21 H 1.09003 * 109.46900 * 270.27424 * 1 2 3 22 22 H 1.08997 * 109.47373 * 30.27665 * 1 2 3 23 23 H 1.09005 * 109.46793 * 150.27583 * 1 2 3 24 24 H 1.07995 * 119.12186 * 179.68956 * 4 3 2 25 25 H 1.09003 * 109.46989 * 265.18999 * 7 6 5 26 26 H 1.08998 * 109.47871 * 25.19066 * 7 6 5 27 27 H 1.09003 * 109.47253 * 145.19485 * 7 6 5 28 28 H 1.09000 * 109.47249 * 158.14677 * 9 8 2 29 29 H 1.09002 * 109.47024 * 38.14718 * 9 8 2 30 30 H 1.08999 * 109.47284 * 54.67263 * 11 10 9 31 31 H 1.08999 * 109.46921 * 174.67574 * 11 10 9 32 32 H 1.08999 * 109.46872 * 294.67561 * 11 10 9 33 33 H 1.09001 * 109.47404 * 309.99415 * 12 10 9 34 34 H 1.09002 * 109.47530 * 70.00172 * 12 10 9 35 35 H 0.97006 * 120.00423 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1409 0.0000 4 6 3.4955 1.1495 -0.0057 5 7 4.1964 0.0334 -0.0060 6 6 3.5945 -1.1452 -0.0001 7 6 4.4042 -2.4162 0.0001 8 6 2.2094 -1.1947 0.0057 9 6 1.4846 -2.5160 0.0126 10 7 1.0775 -2.8440 1.3854 11 6 2.2469 -3.1341 2.2261 12 6 0.1281 -3.9648 1.3994 13 6 -0.4525 -4.1140 2.7821 14 1 -0.1471 -3.4431 3.5713 15 6 -1.3745 -5.1064 3.0392 16 7 -1.7469 -5.9231 2.0780 17 14 -2.0937 -5.2919 4.7532 18 1 -1.5148 -4.2573 5.6475 19 1 -3.5679 -5.1243 4.6922 20 1 -1.7704 -6.6412 5.2824 21 1 -0.3633 0.0049 1.0277 22 1 -0.3634 0.8875 -0.5181 23 1 -0.3633 -0.8925 -0.5096 24 1 4.0150 2.0963 -0.0106 25 1 4.5224 -2.7718 -1.0235 26 1 5.3856 -2.2219 0.4328 27 1 3.8902 -3.1743 0.5910 28 1 2.1459 -3.2952 -0.3663 29 1 0.6010 -2.4490 -0.6222 30 1 2.9449 -2.2984 2.1785 31 1 1.9255 -3.2809 3.2572 32 1 2.7376 -4.0384 1.8662 33 1 -0.6742 -3.7703 0.6875 34 1 0.6456 -4.8830 1.1217 35 1 -2.3953 -6.6215 2.2589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261133151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:49 Heat of formation + Delta-G solvation = 44.316315 kcal Electronic energy + Delta-G solvation = -16704.498969 eV Core-core repulsion = 14123.541030 eV Total energy + Delta-G solvation = -2580.957939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03928 -36.97245 -34.63518 -33.48048 -32.18091 -29.32000 -28.35179 -27.17374 -26.32093 -24.39242 -22.11723 -21.45596 -20.27068 -17.65752 -16.49134 -16.12270 -15.51274 -14.79770 -14.35682 -14.25973 -13.86729 -13.27973 -13.18753 -12.93992 -12.72867 -12.39874 -12.37423 -12.01490 -11.98714 -11.32728 -11.14459 -10.92572 -10.81716 -10.63214 -10.42919 -10.03862 -9.92085 -9.30345 -9.02051 -8.95433 -8.49105 -7.35673 -6.08696 -4.10128 1.11390 1.26030 3.27521 3.35488 3.40162 3.89313 4.19900 4.27758 4.38695 4.62639 4.88681 5.06160 5.19802 5.28466 5.48178 5.51994 5.55493 5.74535 5.82451 5.84041 5.95289 6.00333 6.12597 6.15453 6.27494 6.34324 6.64211 6.71203 7.16388 7.20647 7.26195 7.72150 7.96976 8.08861 8.29373 8.44509 8.97667 9.54655 11.02091 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036258 B = 0.006196 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.066452 B = 4518.250850 C = 4798.381505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.195 3.805 3 N -0.531 5.531 4 C 0.286 3.714 5 N -0.532 5.532 6 C 0.176 3.824 7 C -0.117 4.117 8 C -0.167 4.167 9 C 0.095 3.905 10 N -0.532 5.532 11 C 0.036 3.964 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.190 0.810 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.017 0.983 33 H 0.032 0.968 34 H -0.007 1.007 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 8.259 -5.152 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.049 3.951 3 N -0.246 5.246 4 C -0.003 4.003 5 N -0.247 5.247 6 C 0.030 3.970 7 C -0.174 4.174 8 C -0.172 4.172 9 C -0.034 4.034 10 N -0.257 5.257 11 C -0.113 4.113 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.112 0.888 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.207 0.793 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.011 0.989 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.467 9.361 -4.986 13.571 hybrid contribution -0.382 -1.579 0.586 1.727 sum 8.085 7.782 -4.400 12.053 Atomic orbital electron populations 1.20771 0.87513 1.03136 1.04501 1.21614 0.97750 0.87287 0.88422 1.68242 1.10205 1.30553 1.15588 1.24748 0.87006 0.96548 0.91978 1.68198 1.41973 0.98723 1.15836 1.21557 0.91093 0.94022 0.90344 1.21006 1.00052 0.92816 1.03537 1.21406 0.94735 0.98150 1.02906 1.20938 0.98256 0.90758 0.93495 1.62143 1.13751 1.43514 1.06243 1.22323 0.92158 0.97146 0.99635 1.19781 0.89770 0.85391 0.98222 1.21167 1.23533 1.14428 0.95438 0.91824 1.24973 0.96581 0.95710 0.97256 1.69958 1.32885 1.18828 1.32101 0.86454 0.78917 0.77853 0.84281 1.19688 1.20968 1.21102 0.88781 0.90967 0.89805 0.79327 0.90038 0.90209 0.89204 0.94245 0.89754 0.93919 0.90696 0.96484 0.95025 0.98935 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 9.84 36.01 0.35 -1.11 16 2 C 0.19 3.11 6.82 -82.24 -0.56 2.55 16 3 N -0.53 -8.33 10.38 -10.80 -0.11 -8.44 16 4 C 0.29 4.06 12.29 -92.15 -1.13 2.93 16 5 N -0.53 -8.09 10.38 -10.80 -0.11 -8.20 16 6 C 0.18 2.66 5.99 -82.24 -0.49 2.17 16 7 C -0.12 -1.47 8.90 36.00 0.32 -1.15 16 8 C -0.17 -2.68 4.73 -104.36 -0.49 -3.18 16 9 C 0.09 1.60 4.34 -4.97 -0.02 1.58 16 10 N -0.53 -10.79 4.73 -245.82 -1.16 -11.95 16 11 C 0.04 0.67 7.86 60.07 0.47 1.15 16 12 C 0.19 4.74 4.72 -4.98 -0.02 4.72 16 13 C -0.51 -13.71 8.53 -34.44 -0.29 -14.01 16 14 H 0.06 1.73 7.10 -52.49 -0.37 1.35 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.08 1.18 6.23 -51.93 -0.32 0.85 16 24 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.18 4.09 -51.93 -0.21 0.97 16 28 H 0.04 0.63 6.44 -51.93 -0.33 0.30 16 29 H 0.08 1.39 6.19 -51.93 -0.32 1.07 16 30 H 0.04 0.73 5.84 -51.93 -0.30 0.43 16 31 H 0.07 1.52 6.90 -51.93 -0.36 1.17 16 32 H 0.02 0.31 7.22 -51.93 -0.37 -0.07 16 33 H 0.03 0.82 7.90 -51.93 -0.41 0.41 16 34 H -0.01 -0.19 8.11 -51.93 -0.42 -0.61 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -29.96 284.04 -8.04 -38.00 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.68 Total: -1.81 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.97 Total: -2.89 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.65 Total: -53.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.96 -8.04 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.314 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds