Wall clock time and date at job start Mon Mar 30 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32340 * 120.44452 * 2 1 4 4 C 1.31797 * 120.81663 * 180.28621 * 3 2 1 5 5 N 1.31793 * 121.75229 * 359.71754 * 4 3 2 6 6 C 1.32333 * 120.82192 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.44805 * 180.02562 * 6 5 4 8 8 C 1.38591 * 120.45138 * 179.72645 * 2 1 3 9 9 C 1.50703 * 120.79914 * 359.97438 * 8 2 1 10 10 N 1.46901 * 109.47092 * 278.14500 * 9 8 2 11 11 C 1.46905 * 110.99801 * 291.77616 * 10 9 8 12 12 C 1.46893 * 110.99896 * 167.82259 * 10 9 8 13 13 C 1.50707 * 109.46837 * 189.99715 * 12 10 9 14 14 H 1.07993 * 119.99998 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99809 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99873 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47365 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47091 * 120.00649 * 17 15 13 20 20 H 1.48497 * 109.47608 * 240.00317 * 17 15 13 21 21 H 1.09003 * 109.46900 * 270.27424 * 1 2 3 22 22 H 1.08997 * 109.47373 * 30.27665 * 1 2 3 23 23 H 1.09005 * 109.46793 * 150.27583 * 1 2 3 24 24 H 1.07995 * 119.12186 * 179.68956 * 4 3 2 25 25 H 1.09003 * 109.46989 * 265.18999 * 7 6 5 26 26 H 1.08998 * 109.47871 * 25.19066 * 7 6 5 27 27 H 1.09003 * 109.47253 * 145.19485 * 7 6 5 28 28 H 1.09000 * 109.47249 * 158.14677 * 9 8 2 29 29 H 1.09002 * 109.47024 * 38.14718 * 9 8 2 30 30 H 1.08999 * 109.47284 * 54.67263 * 11 10 9 31 31 H 1.08999 * 109.46921 * 174.67574 * 11 10 9 32 32 H 1.08999 * 109.46872 * 294.67561 * 11 10 9 33 33 H 1.09001 * 109.47404 * 309.99415 * 12 10 9 34 34 H 1.09002 * 109.47530 * 70.00172 * 12 10 9 35 35 H 0.97006 * 120.00423 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1409 0.0000 4 6 3.4955 1.1495 -0.0057 5 7 4.1964 0.0334 -0.0060 6 6 3.5945 -1.1452 -0.0001 7 6 4.4042 -2.4162 0.0001 8 6 2.2094 -1.1947 0.0057 9 6 1.4846 -2.5160 0.0126 10 7 1.0775 -2.8440 1.3854 11 6 2.2469 -3.1341 2.2261 12 6 0.1281 -3.9648 1.3994 13 6 -0.4525 -4.1140 2.7821 14 1 -0.1471 -3.4431 3.5713 15 6 -1.3745 -5.1064 3.0392 16 7 -1.7469 -5.9231 2.0780 17 14 -2.0937 -5.2919 4.7532 18 1 -1.5148 -4.2573 5.6475 19 1 -3.5679 -5.1243 4.6922 20 1 -1.7704 -6.6412 5.2824 21 1 -0.3633 0.0049 1.0277 22 1 -0.3634 0.8875 -0.5181 23 1 -0.3633 -0.8925 -0.5096 24 1 4.0150 2.0963 -0.0106 25 1 4.5224 -2.7718 -1.0235 26 1 5.3856 -2.2219 0.4328 27 1 3.8902 -3.1743 0.5910 28 1 2.1459 -3.2952 -0.3663 29 1 0.6010 -2.4490 -0.6222 30 1 2.9449 -2.2984 2.1785 31 1 1.9255 -3.2809 3.2572 32 1 2.7376 -4.0384 1.8662 33 1 -0.6742 -3.7703 0.6875 34 1 0.6456 -4.8830 1.1217 35 1 -2.3953 -6.6215 2.2589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:49 Heat of formation + Delta-G solvation = 25.228516 kcal Electronic energy + Delta-G solvation = -16705.326679 eV Core-core repulsion = 14123.541030 eV Total energy + Delta-G solvation = -2581.785648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21559 -38.52279 -35.78748 -35.14248 -33.89937 -30.45426 -29.77872 -28.91004 -27.61759 -26.02637 -23.67677 -22.59878 -21.86086 -18.84936 -18.51940 -17.23429 -16.99493 -16.47366 -15.85052 -15.82493 -15.42984 -14.39490 -14.34684 -14.25977 -14.20216 -13.84495 -13.54395 -13.48794 -13.24370 -13.02385 -12.72985 -12.59834 -12.52816 -12.27378 -12.02548 -11.65247 -11.23964 -11.19115 -10.60797 -10.22204 -10.17043 -9.01299 -8.18971 -6.27752 -0.06138 0.07126 1.41424 1.43287 1.55442 2.41254 2.71900 3.11458 3.14450 3.18808 3.40797 3.48862 3.80076 3.90625 4.36356 4.37757 4.45690 4.53723 4.60810 4.63118 4.68956 4.73769 4.82440 4.95749 5.03949 5.08657 5.18597 5.21767 5.31883 5.55401 5.66320 6.04811 6.06316 6.29183 6.58805 6.87980 7.13918 7.41825 8.91804 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036258 B = 0.006196 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.066452 B = 4518.250850 C = 4798.381505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.185 3.815 3 N -0.544 5.544 4 C 0.287 3.713 5 N -0.541 5.541 6 C 0.175 3.825 7 C -0.115 4.115 8 C -0.183 4.183 9 C 0.101 3.899 10 N -0.538 5.538 11 C 0.043 3.957 12 C 0.209 3.791 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.225 0.775 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.012 0.988 34 H -0.031 1.031 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 9.090 -4.847 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.040 3.960 3 N -0.259 5.259 4 C -0.001 4.001 5 N -0.256 5.256 6 C 0.029 3.971 7 C -0.172 4.172 8 C -0.188 4.188 9 C -0.028 4.028 10 N -0.262 5.262 11 C -0.105 4.105 12 C 0.083 3.917 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.241 0.759 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.030 0.970 34 H -0.013 1.013 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.387 10.209 -4.684 14.639 hybrid contribution -0.592 -1.765 0.436 1.912 sum 8.795 8.444 -4.248 12.911 Atomic orbital electron populations 1.20742 0.86974 1.03919 1.03893 1.21853 0.98402 0.87594 0.88171 1.68318 1.10959 1.30280 1.16376 1.25513 0.86761 0.97702 0.90090 1.68316 1.41982 0.98914 1.16419 1.21941 0.90978 0.95043 0.89140 1.21050 1.00075 0.91376 1.04673 1.21288 0.95240 0.97404 1.04867 1.20877 0.98673 0.91781 0.91469 1.62006 1.14214 1.41380 1.08646 1.22247 0.91792 0.98223 0.98239 1.19415 0.89919 0.85772 0.96561 1.21458 1.23689 1.14320 0.96384 0.92266 1.25793 0.96977 0.95397 1.01050 1.70065 1.33574 1.19469 1.34122 0.85426 0.78120 0.77943 0.79672 1.19131 1.20482 1.20528 0.89969 0.89268 0.89980 0.75857 0.88195 0.88975 0.89977 0.93177 0.89806 0.92140 0.92606 0.95752 0.96952 1.01304 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 9.84 71.24 0.70 -2.06 16 2 C 0.18 5.71 6.82 42.57 0.29 6.00 16 3 N -0.54 -16.11 10.38 -188.08 -1.95 -18.06 16 4 C 0.29 7.47 12.29 180.88 2.22 9.69 16 5 N -0.54 -15.16 10.38 -188.08 -1.95 -17.11 16 6 C 0.17 4.96 5.99 42.57 0.25 5.22 16 7 C -0.11 -2.62 8.90 71.24 0.63 -1.99 16 8 C -0.18 -5.67 4.73 -19.69 -0.09 -5.76 16 9 C 0.10 3.36 4.34 85.56 0.37 3.73 16 10 N -0.54 -21.86 4.73 -931.63 -4.40 -26.26 16 11 C 0.04 1.60 7.86 127.69 1.00 2.61 16 12 C 0.21 10.48 4.72 85.56 0.40 10.89 16 13 C -0.52 -28.41 8.53 25.60 0.22 -28.20 16 14 H 0.06 3.23 7.10 -2.91 -0.02 3.21 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 17 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.08 2.30 6.23 -2.38 -0.01 2.29 16 24 H 0.23 3.94 8.06 -2.91 -0.02 3.91 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 2.01 4.09 -2.39 -0.01 2.00 16 28 H 0.05 1.57 6.44 -2.39 -0.02 1.55 16 29 H 0.08 2.78 6.19 -2.39 -0.01 2.76 16 30 H 0.06 2.01 5.84 -2.39 -0.01 2.00 16 31 H 0.06 2.27 6.90 -2.39 -0.02 2.25 16 32 H 0.02 0.86 7.22 -2.39 -0.02 0.84 16 33 H 0.01 0.66 7.90 -2.39 -0.02 0.64 16 34 H -0.03 -1.66 8.11 -2.39 -0.02 -1.68 16 35 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -62.90 284.04 1.56 -61.34 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.09 Total: 7.68 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.47 Total: 0.93 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -8.02 Total: -115.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.90 1.56 -61.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.573 kcal (2) G-P(sol) polarization free energy of solvation -62.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds